diff --git a/core/src/test/resources/integrationTestScript.xml b/core/src/test/resources/integrationTestScript.xml index 80f4000136a..395272de8cc 100644 --- a/core/src/test/resources/integrationTestScript.xml +++ b/core/src/test/resources/integrationTestScript.xml @@ -35,7 +35,7 @@ --data src/test/resources/genesets/study_es_0_genesets.gmt --new-version - msigdb_6.1 + msigdb_7.5.1 diff --git a/core/src/test/scripts/test_data/api_json_system_tests/genesets_version.json b/core/src/test/scripts/test_data/api_json_system_tests/genesets_version.json index f60dab80398..204c3d72556 100644 --- a/core/src/test/scripts/test_data/api_json_system_tests/genesets_version.json +++ b/core/src/test/scripts/test_data/api_json_system_tests/genesets_version.json @@ -1 +1 @@ -["msigdb_6.1"] \ No newline at end of file +["msigdb_7.5.1"] \ No newline at end of file diff --git a/core/src/test/scripts/test_data/api_json_unit_tests/genesets_version.json b/core/src/test/scripts/test_data/api_json_unit_tests/genesets_version.json index f60dab80398..204c3d72556 100644 --- a/core/src/test/scripts/test_data/api_json_unit_tests/genesets_version.json +++ b/core/src/test/scripts/test_data/api_json_unit_tests/genesets_version.json @@ -1 +1 @@ -["msigdb_6.1"] \ No newline at end of file +["msigdb_7.5.1"] \ No newline at end of file diff --git a/core/src/test/scripts/test_data/study_es_0/meta_gsva_pvalues.txt b/core/src/test/scripts/test_data/study_es_0/meta_gsva_pvalues.txt index ee985fbf4d4..59b8254cd8d 100644 --- a/core/src/test/scripts/test_data/study_es_0/meta_gsva_pvalues.txt +++ b/core/src/test/scripts/test_data/study_es_0/meta_gsva_pvalues.txt @@ -6,4 +6,4 @@ source_stable_id: gsva_scores profile_name: Pvalues of GSVA scores on oncogenic signatures gene sets profile_description: Pvalues GSVA scores using mRNA expression data data_filename: data_gsva_pvalues.txt -geneset_def_version: msigdb_6.1 +geneset_def_version: msigdb_7.5.1 diff --git a/core/src/test/scripts/test_data/study_es_0/meta_gsva_scores.txt b/core/src/test/scripts/test_data/study_es_0/meta_gsva_scores.txt index ff6a143f386..16874d408a9 100644 --- a/core/src/test/scripts/test_data/study_es_0/meta_gsva_scores.txt +++ b/core/src/test/scripts/test_data/study_es_0/meta_gsva_scores.txt @@ -7,4 +7,4 @@ profile_name: GSVA scores on oncogenic signatures gene sets profile_description: GSVA scores using mRNA expression data data_filename: data_gsva_scores.txt show_profile_in_analysis_tab: true -geneset_def_version: msigdb_6.1 +geneset_def_version: msigdb_7.5.1 diff --git a/docs/File-Formats.md b/docs/File-Formats.md index 37592f25ebc..5ad02b425da 100644 --- a/docs/File-Formats.md +++ b/docs/File-Formats.md @@ -1416,7 +1416,7 @@ profile_name: GSVA scores on oncogenic signatures gene sets profile_description: GSVA scores on oncogenic signatures gene sets using mRNA expression data calculated with GSVA version x with parameters x and y. data_filename: data_gsva_scores.txt show_profile_in_analysis_tab: true -geneset_def_version: msigdb_6.1 +geneset_def_version: msigdb_7.5.1 ``` ### GSVA score data file @@ -1460,7 +1460,7 @@ source_stable_id: gsva_scores profile_name: GSVA p-values for GSVA scores on oncogenic signatures gene sets profile_description: GSVA p-values for GSVA scores on oncogenic signatures gene sets using mRNA expression data calculated with the bootstrapping method in GSVA version x with parameters x and y. data_filename: data_gsva_pvalues.txt -geneset_def_version: msigdb_6.1 +geneset_def_version: msigdb_7.5.1 ``` ### GSVA p-value data file diff --git a/pom.xml b/pom.xml index b3b09e5530d..bdd4d529e4d 100644 --- a/pom.xml +++ b/pom.xml @@ -276,7 +276,7 @@ - v5.3.6 + v5.3.7 com.github.cbioportal 5.2.20.RELEASE 5.3.0.RELEASE