From d9f3e678be80c73ba15219df1fbd29594128e78d Mon Sep 17 00:00:00 2001 From: Bryan Lai Date: Wed, 18 Sep 2024 15:34:31 -0400 Subject: [PATCH] delete specs --- apiTests/specs/clinical-data-filters.json | 3581 ----------------- .../specs/custom-data-bin-counts-filter.json | 369 -- apiTests/specs/custom-data-counts-filter.json | 377 -- .../specs/generic-assay-data-bin-counts.json | 126 - apiTests/specs/genie-public.json | 10 - apiTests/specs/genomic-data-bin-counts.json | 150 - apiTests/specs/mutation-data-counts.json | 144 - .../specs/sample-lists-counts-filter.json | 169 - 8 files changed, 4926 deletions(-) delete mode 100644 apiTests/specs/clinical-data-filters.json delete mode 100644 apiTests/specs/custom-data-bin-counts-filter.json delete mode 100644 apiTests/specs/custom-data-counts-filter.json delete mode 100644 apiTests/specs/generic-assay-data-bin-counts.json delete mode 100644 apiTests/specs/genie-public.json delete mode 100644 apiTests/specs/genomic-data-bin-counts.json delete mode 100644 apiTests/specs/mutation-data-counts.json delete mode 100644 apiTests/specs/sample-lists-counts-filter.json diff --git a/apiTests/specs/clinical-data-filters.json b/apiTests/specs/clinical-data-filters.json deleted file mode 100644 index b201a5106ed..00000000000 --- a/apiTests/specs/clinical-data-filters.json +++ /dev/null @@ -1,3581 +0,0 @@ -[ - { - "name": "Age at Which Sequencing was Reported <= 25", - "note": "Filter result should include patients/samples with special age value of '<18'", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Age at Which Sequencing was Reported:≤ 25", - "tests": [ - { - "hash": 22663238, - "filterString": "Age at Which Sequencing was Reported:≤ 25", - "data": { - "attributes": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "disableLogScale": false, - "showNA": false - } - ], - "studyViewFilter": { - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&", - "label": "ClinicalDataBin", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 1521321988, - "filterString": "Age at Which Sequencing was Reported:≤ 25", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/filtered-samples/fetch?", - "label": "FilteredSamples", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 1565039040, - "filterString": "Age at Which Sequencing was Reported:≤ 25", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/cna-genes/fetch?", - "label": "CNAGenes", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 1753439688, - "filterString": "Age at Which Sequencing was Reported:≤ 25", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/sample-lists-counts/fetch?", - "label": "CaseList", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 2068869541, - "filterString": "Age at Which Sequencing was Reported:≤ 25", - "data": { - "attributes": [ - { - "attributeId": "CENTER" - }, - { - "attributeId": "SEQ_ASSAY_ID" - }, - { - "attributeId": "SAMPLE_TYPE_DETAILED" - }, - { - "attributeId": "SAMPLE_COUNT" - }, - { - "attributeId": "SAMPLE_TYPE" - }, - { - "attributeId": "SEX" - }, - { - "attributeId": "CANCER_TYPE_DETAILED" - }, - { - "attributeId": "PRIMARY_RACE" - }, - { - "attributeId": "DEAD" - }, - { - "attributeId": "ETHNICITY" - }, - { - "attributeId": "ONCOTREE_CODE" - }, - { - "attributeId": "CANCER_TYPE" - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-counts/fetch?", - "label": "ClinicalDataCounts", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 2119685176, - "filterString": "Age at Which Sequencing was Reported:≤ 25", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/mutated-genes/fetch?", - "label": "MutatedGenes", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -150802423, - "filterString": "Age at Which Sequencing was Reported:≤ 25", - "data": { - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/filtered-samples/fetch?", - "label": "FilteredSamples", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -258471519, - "filterString": "Age at Which Sequencing was Reported:≤ 25", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/molecular-profile-sample-counts/fetch?", - "label": "MolecularProfileSample", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -1147867666, - "filterString": "Age at Which Sequencing was Reported:≤ 25", - "data": { - "attributes": [ - { - "attributeId": "MUTATION_COUNT", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "FRACTION_GENOME_ALTERED", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "INT_CONTACT", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "INT_DOD", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "YEAR_DEATH", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "YEAR_CONTACT", - "disableLogScale": false, - "showNA": false - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&", - "label": "ClinicalDataBin", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -527271474, - "filterString": "Age at Which Sequencing was Reported:≤ 25", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/structuralvariant-genes/fetch?", - "label": "StructuralVariantGenes", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -1398413375, - "filterString": "Age at Which Sequencing was Reported:≤ 25", - "data": { - "attributes": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "disableLogScale": false, - "showNA": false - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&", - "label": "ClinicalDataBin", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -23841008, - "filterString": "Age at Which Sequencing was Reported:≤ 25", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&", - "label": "ClinicalDataDensity", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - } - ] - }, - { - "name": "(Age at Which Sequencing was Reported <= 25) AND (Interval in days from DOB to DOD <= 6570)", - "note": "Filter result should include patients/samples with special age value of '<18' and special day value of '<6570'", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]},{\"attributeId\":\"INT_DOD\",\"values\":[{\"end\":6570}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Age at Which Sequencing was Reported:≤ 25Interval in days from DOB to DOD:≤ 6570", - "tests": [ - { - "hash": 98873588, - "filterString": "Age at Which Sequencing was Reported:≤ 25Interval in days from DOB to DOD:≤ 6570", - "data": { - "attributes": [ - { - "attributeId": "MUTATION_COUNT", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "FRACTION_GENOME_ALTERED", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "INT_CONTACT", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "YEAR_DEATH", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "YEAR_CONTACT", - "disableLogScale": false, - "showNA": false - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&", - "label": "ClinicalDataBin", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]},{\"attributeId\":\"INT_DOD\",\"values\":[{\"end\":6570}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 392718630, - "filterString": "Age at Which Sequencing was Reported:≤ 25Interval in days from DOB to DOD:≤ 6570", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - }, - { - "attributeId": "INT_DOD", - "values": [ - { - "end": 6570 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/molecular-profile-sample-counts/fetch?", - "label": "MolecularProfileSample", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]},{\"attributeId\":\"INT_DOD\",\"values\":[{\"end\":6570}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 430471933, - "filterString": "Age at Which Sequencing was Reported:≤ 25Interval in days from DOB to DOD:≤ 6570", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - }, - { - "attributeId": "INT_DOD", - "values": [ - { - "end": 6570 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/mutated-genes/fetch?", - "label": "MutatedGenes", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]},{\"attributeId\":\"INT_DOD\",\"values\":[{\"end\":6570}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 573897579, - "filterString": "Age at Which Sequencing was Reported:≤ 25Interval in days from DOB to DOD:≤ 6570", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - }, - { - "attributeId": "INT_DOD", - "values": [ - { - "end": 6570 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&", - "label": "ClinicalDataDensity", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]},{\"attributeId\":\"INT_DOD\",\"values\":[{\"end\":6570}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 868889688, - "filterString": "Age at Which Sequencing was Reported:≤ 25Interval in days from DOB to DOD:≤ 6570", - "data": { - "attributes": [ - { - "attributeId": "INT_DOD", - "disableLogScale": false, - "showNA": false - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&", - "label": "ClinicalDataBin", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]},{\"attributeId\":\"INT_DOD\",\"values\":[{\"end\":6570}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 1198202061, - "filterString": "Age at Which Sequencing was Reported:≤ 25Interval in days from DOB to DOD:≤ 6570", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - }, - { - "attributeId": "INT_DOD", - "values": [ - { - "end": 6570 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/sample-lists-counts/fetch?", - "label": "CaseList", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]},{\"attributeId\":\"INT_DOD\",\"values\":[{\"end\":6570}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 1892761706, - "filterString": "Age at Which Sequencing was Reported:≤ 25Interval in days from DOB to DOD:≤ 6570", - "data": { - "attributes": [ - { - "attributeId": "CENTER" - }, - { - "attributeId": "SEQ_ASSAY_ID" - }, - { - "attributeId": "SAMPLE_TYPE_DETAILED" - }, - { - "attributeId": "SAMPLE_COUNT" - }, - { - "attributeId": "SAMPLE_TYPE" - }, - { - "attributeId": "SEX" - }, - { - "attributeId": "CANCER_TYPE_DETAILED" - }, - { - "attributeId": "PRIMARY_RACE" - }, - { - "attributeId": "DEAD" - }, - { - "attributeId": "ETHNICITY" - }, - { - "attributeId": "ONCOTREE_CODE" - }, - { - "attributeId": "CANCER_TYPE" - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - }, - { - "attributeId": "INT_DOD", - "values": [ - { - "end": 6570 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-counts/fetch?", - "label": "ClinicalDataCounts", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]},{\"attributeId\":\"INT_DOD\",\"values\":[{\"end\":6570}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 2009673299, - "filterString": "Age at Which Sequencing was Reported:≤ 25Interval in days from DOB to DOD:≤ 6570", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - }, - { - "attributeId": "INT_DOD", - "values": [ - { - "end": 6570 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/structuralvariant-genes/fetch?", - "label": "StructuralVariantGenes", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]},{\"attributeId\":\"INT_DOD\",\"values\":[{\"end\":6570}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 2128015567, - "filterString": "Age at Which Sequencing was Reported:≤ 25Interval in days from DOB to DOD:≤ 6570", - "data": { - "attributes": [ - { - "attributeId": "MUTATION_COUNT", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "FRACTION_GENOME_ALTERED", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "INT_CONTACT", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "YEAR_DEATH", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "YEAR_CONTACT", - "disableLogScale": false, - "showNA": false - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - }, - { - "attributeId": "INT_DOD", - "values": [ - { - "end": 6570 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&", - "label": "ClinicalDataBin", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]},{\"attributeId\":\"INT_DOD\",\"values\":[{\"end\":6570}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -1993560289, - "filterString": "Age at Which Sequencing was Reported:≤ 25Interval in days from DOB to DOD:≤ 6570", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - }, - { - "attributeId": "INT_DOD", - "values": [ - { - "end": 6570 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/filtered-samples/fetch?", - "label": "FilteredSamples", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]},{\"attributeId\":\"INT_DOD\",\"values\":[{\"end\":6570}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -2113570212, - "filterString": "Age at Which Sequencing was Reported:≤ 25Interval in days from DOB to DOD:≤ 6570", - "data": { - "attributes": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "disableLogScale": false, - "showNA": false - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - }, - { - "attributeId": "INT_DOD", - "values": [ - { - "end": 6570 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&", - "label": "ClinicalDataBin", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]},{\"attributeId\":\"INT_DOD\",\"values\":[{\"end\":6570}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -1113756923, - "filterString": "Age at Which Sequencing was Reported:≤ 25Interval in days from DOB to DOD:≤ 6570", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - }, - { - "attributeId": "INT_DOD", - "values": [ - { - "end": 6570 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/cna-genes/fetch?", - "label": "CNAGenes", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]},{\"attributeId\":\"INT_DOD\",\"values\":[{\"end\":6570}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -1676848333, - "filterString": "Age at Which Sequencing was Reported:≤ 25Interval in days from DOB to DOD:≤ 6570", - "data": { - "attributes": [ - { - "attributeId": "INT_DOD", - "disableLogScale": false, - "showNA": false - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "end": 25 - } - ] - }, - { - "attributeId": "INT_DOD", - "values": [ - { - "end": 6570 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&", - "label": "ClinicalDataBin", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"end\":25}]},{\"attributeId\":\"INT_DOD\",\"values\":[{\"end\":6570}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - } - ] - }, - { - "name": "(Age at Which Sequencing was Reported > 85) AND (Interval in days from DOB to date of last contact > 32485)", - "note": "Filter result should include patients/samples with special age value of '>89' and special date value of '>32485'", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"start\":85}]},{\"attributeId\":\"INT_CONTACT\",\"values\":[{\"start\":32485}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Age at Which Sequencing was Reported:> 85Interval in days from DOB to date of last contact:> 32485", - "tests": [ - { - "hash": 108607037, - "filterString": "Age at Which Sequencing was Reported:> 85Interval in days from DOB to date of last contact:> 32485", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "start": 85 - } - ] - }, - { - "attributeId": "INT_CONTACT", - "values": [ - { - "start": 32485 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/molecular-profile-sample-counts/fetch?", - "label": "MolecularProfileSample", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"start\":85}]},{\"attributeId\":\"INT_CONTACT\",\"values\":[{\"start\":32485}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 119943124, - "filterString": "Age at Which Sequencing was Reported:> 85Interval in days from DOB to date of last contact:> 32485", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "start": 85 - } - ] - }, - { - "attributeId": "INT_CONTACT", - "values": [ - { - "start": 32485 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/mutated-genes/fetch?", - "label": "MutatedGenes", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"start\":85}]},{\"attributeId\":\"INT_CONTACT\",\"values\":[{\"start\":32485}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 1054938683, - "filterString": "Age at Which Sequencing was Reported:> 85Interval in days from DOB to date of last contact:> 32485", - "data": { - "attributes": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "disableLogScale": false, - "showNA": false - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "start": 85 - } - ] - }, - { - "attributeId": "INT_CONTACT", - "values": [ - { - "start": 32485 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&", - "label": "ClinicalDataBin", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"start\":85}]},{\"attributeId\":\"INT_CONTACT\",\"values\":[{\"start\":32485}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 1187512938, - "filterString": "Age at Which Sequencing was Reported:> 85Interval in days from DOB to date of last contact:> 32485", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "start": 85 - } - ] - }, - { - "attributeId": "INT_CONTACT", - "values": [ - { - "start": 32485 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/structuralvariant-genes/fetch?", - "label": "StructuralVariantGenes", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"start\":85}]},{\"attributeId\":\"INT_CONTACT\",\"values\":[{\"start\":32485}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 1344961217, - "filterString": "Age at Which Sequencing was Reported:> 85Interval in days from DOB to date of last contact:> 32485", - "data": { - "attributes": [ - { - "attributeId": "MUTATION_COUNT", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "FRACTION_GENOME_ALTERED", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "INT_DOD", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "YEAR_DEATH", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "YEAR_CONTACT", - "disableLogScale": false, - "showNA": false - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "start": 85 - } - ] - }, - { - "attributeId": "INT_CONTACT", - "values": [ - { - "start": 32485 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&", - "label": "ClinicalDataBin", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"start\":85}]},{\"attributeId\":\"INT_CONTACT\",\"values\":[{\"start\":32485}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 1644005436, - "filterString": "Age at Which Sequencing was Reported:> 85Interval in days from DOB to date of last contact:> 32485", - "data": { - "attributes": [ - { - "attributeId": "MUTATION_COUNT", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "FRACTION_GENOME_ALTERED", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "INT_DOD", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "YEAR_DEATH", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "YEAR_CONTACT", - "disableLogScale": false, - "showNA": false - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "start": 85 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&", - "label": "ClinicalDataBin", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"start\":85}]},{\"attributeId\":\"INT_CONTACT\",\"values\":[{\"start\":32485}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 1749565419, - "filterString": "Age at Which Sequencing was Reported:> 85Interval in days from DOB to date of last contact:> 32485", - "data": { - "attributes": [ - { - "attributeId": "INT_CONTACT", - "disableLogScale": false, - "showNA": false - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "start": 85 - } - ] - }, - { - "attributeId": "INT_CONTACT", - "values": [ - { - "start": 32485 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&", - "label": "ClinicalDataBin", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"start\":85}]},{\"attributeId\":\"INT_CONTACT\",\"values\":[{\"start\":32485}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 2086100212, - "filterString": "Age at Which Sequencing was Reported:> 85Interval in days from DOB to date of last contact:> 32485", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "start": 85 - } - ] - }, - { - "attributeId": "INT_CONTACT", - "values": [ - { - "start": 32485 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&", - "label": "ClinicalDataDensity", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"start\":85}]},{\"attributeId\":\"INT_CONTACT\",\"values\":[{\"start\":32485}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -733925422, - "filterString": "Age at Which Sequencing was Reported:> 85Interval in days from DOB to date of last contact:> 32485", - "data": { - "attributes": [ - { - "attributeId": "INT_CONTACT", - "disableLogScale": false, - "showNA": false - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "start": 85 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&", - "label": "ClinicalDataBin", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"start\":85}]},{\"attributeId\":\"INT_CONTACT\",\"values\":[{\"start\":32485}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -1597753624, - "filterString": "Age at Which Sequencing was Reported:> 85Interval in days from DOB to date of last contact:> 32485", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "start": 85 - } - ] - }, - { - "attributeId": "INT_CONTACT", - "values": [ - { - "start": 32485 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/filtered-samples/fetch?", - "label": "FilteredSamples", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"start\":85}]},{\"attributeId\":\"INT_CONTACT\",\"values\":[{\"start\":32485}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -1582241175, - "filterString": "Age at Which Sequencing was Reported:> 85Interval in days from DOB to date of last contact:> 32485", - "data": { - "attributes": [ - { - "attributeId": "CENTER" - }, - { - "attributeId": "SEQ_ASSAY_ID" - }, - { - "attributeId": "SAMPLE_TYPE_DETAILED" - }, - { - "attributeId": "SAMPLE_COUNT" - }, - { - "attributeId": "SAMPLE_TYPE" - }, - { - "attributeId": "SEX" - }, - { - "attributeId": "CANCER_TYPE_DETAILED" - }, - { - "attributeId": "PRIMARY_RACE" - }, - { - "attributeId": "ETHNICITY" - }, - { - "attributeId": "ONCOTREE_CODE" - }, - { - "attributeId": "CANCER_TYPE" - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "start": 85 - } - ] - }, - { - "attributeId": "INT_CONTACT", - "values": [ - { - "start": 32485 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-counts/fetch?", - "label": "ClinicalDataCounts", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"start\":85}]},{\"attributeId\":\"INT_CONTACT\",\"values\":[{\"start\":32485}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -991091876, - "filterString": "Age at Which Sequencing was Reported:> 85Interval in days from DOB to date of last contact:> 32485", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "start": 85 - } - ] - }, - { - "attributeId": "INT_CONTACT", - "values": [ - { - "start": 32485 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/cna-genes/fetch?", - "label": "CNAGenes", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"start\":85}]},{\"attributeId\":\"INT_CONTACT\",\"values\":[{\"start\":32485}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -1305635740, - "filterString": "Age at Which Sequencing was Reported:> 85Interval in days from DOB to date of last contact:> 32485", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE_AT_SEQ_REPORT", - "values": [ - { - "start": 85 - } - ] - }, - { - "attributeId": "INT_CONTACT", - "values": [ - { - "start": 32485 - } - ] - } - ], - "studyIds": [ - "genie_public" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/sample-lists-counts/fetch?", - "label": "CaseList", - "studies": [ - "genie_public" - ], - "filterUrl": "/study/summary?id=genie_public#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE_AT_SEQ_REPORT\",\"values\":[{\"start\":85}]},{\"attributeId\":\"INT_CONTACT\",\"values\":[{\"start\":32485}]}],\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - } - ] - }, - { - "name": "(Diagnosis Age: 45 < x ≤ 70) AND (Mutation Count: 20 < x ≤ 80) AND (Ethnicity Category: Hispanic Or Latino)", - "note": "Multiple studies with both numerical and categorical clinical data filters", - "studies": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "filterUrl": "/study/summary?id=brca_akt1_genie_2019%2Cbrca_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE\",\"values\":[{\"start\":45,\"end\":50},{\"start\":50,\"end\":55},{\"start\":55,\"end\":60},{\"start\":60,\"end\":65},{\"start\":65,\"end\":70}]},{\"attributeId\":\"MUTATION_COUNT\",\"values\":[{\"start\":20,\"end\":40},{\"start\":40,\"end\":60},{\"start\":60,\"end\":80}]},{\"attributeId\":\"ETHNICITY\",\"values\":[{\"value\":\"Hispanic Or Latino\"}]}],\"studyIds\":[\"brca_akt1_genie_2019\",\"brca_tcga_pan_can_atlas_2018\",\"skcm_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Diagnosis Age: < x ≤ 4570Mutation Count: < x ≤ 2080Ethnicity Category:Hispanic Or Latino", - "tests": [ - { - "hash": 136627119, - "filterString": "Diagnosis Age: < x ≤ 4570Mutation Count: < x ≤ 2080Ethnicity Category:Hispanic Or Latino", - "data": { - "attributes": [ - { - "attributeId": "AGE", - "disableLogScale": false, - "showNA": false - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE", - "values": [ - { - "start": 45, - "end": 50 - }, - { - "start": 50, - "end": 55 - }, - { - "start": 55, - "end": 60 - }, - { - "start": 60, - "end": 65 - }, - { - "start": 65, - "end": 70 - } - ] - }, - { - "attributeId": "MUTATION_COUNT", - "values": [ - { - "start": 20, - "end": 40 - }, - { - "start": 40, - "end": 60 - }, - { - "start": 60, - "end": 80 - } - ] - }, - { - "attributeId": "ETHNICITY", - "values": [ - { - "value": "Hispanic Or Latino" - } - ] - } - ], - "studyIds": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&", - "label": "ClinicalDataBin", - "studies": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "filterUrl": "/study/summary?id=brca_akt1_genie_2019%2Cbrca_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE\",\"values\":[{\"start\":45,\"end\":50},{\"start\":50,\"end\":55},{\"start\":55,\"end\":60},{\"start\":60,\"end\":65},{\"start\":65,\"end\":70}]},{\"attributeId\":\"MUTATION_COUNT\",\"values\":[{\"start\":20,\"end\":40},{\"start\":40,\"end\":60},{\"start\":60,\"end\":80}]},{\"attributeId\":\"ETHNICITY\",\"values\":[{\"value\":\"Hispanic Or Latino\"}]}],\"studyIds\":[\"brca_akt1_genie_2019\",\"brca_tcga_pan_can_atlas_2018\",\"skcm_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 800772645, - "filterString": "Diagnosis Age: < x ≤ 4570Mutation Count: < x ≤ 2080Ethnicity Category:Hispanic Or Latino", - "data": { - "attributes": [ - { - "attributeId": "OS_STATUS" - }, - { - "attributeId": "DFS_STATUS" - }, - { - "attributeId": "DSS_STATUS" - }, - { - "attributeId": "PFS_STATUS" - }, - { - "attributeId": "SUBTYPE" - }, - { - "attributeId": "TUMOR_TYPE" - }, - { - "attributeId": "SAMPLE_COUNT" - }, - { - "attributeId": "SEX" - }, - { - "attributeId": "AKT_MUTATION_STATUS" - }, - { - "attributeId": "SAMPLE_TYPE" - }, - { - "attributeId": "RACE" - }, - { - "attributeId": "CANCER_TYPE_DETAILED" - }, - { - "attributeId": "AKT_INHIBITOR_YN" - }, - { - "attributeId": "AJCC_STAGE" - }, - { - "attributeId": "ADDITIONAL_SEQUENCING" - }, - { - "attributeId": "CANCER_TYPE" - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE", - "values": [ - { - "start": 45, - "end": 50 - }, - { - "start": 50, - "end": 55 - }, - { - "start": 55, - "end": 60 - }, - { - "start": 60, - "end": 65 - }, - { - "start": 65, - "end": 70 - } - ] - }, - { - "attributeId": "MUTATION_COUNT", - "values": [ - { - "start": 20, - "end": 40 - }, - { - "start": 40, - "end": 60 - }, - { - "start": 60, - "end": 80 - } - ] - }, - { - "attributeId": "ETHNICITY", - "values": [ - { - "value": "Hispanic Or Latino" - } - ] - } - ], - "studyIds": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-counts/fetch?", - "label": "ClinicalDataCounts", - "studies": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "filterUrl": "/study/summary?id=brca_akt1_genie_2019%2Cbrca_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE\",\"values\":[{\"start\":45,\"end\":50},{\"start\":50,\"end\":55},{\"start\":55,\"end\":60},{\"start\":60,\"end\":65},{\"start\":65,\"end\":70}]},{\"attributeId\":\"MUTATION_COUNT\",\"values\":[{\"start\":20,\"end\":40},{\"start\":40,\"end\":60},{\"start\":60,\"end\":80}]},{\"attributeId\":\"ETHNICITY\",\"values\":[{\"value\":\"Hispanic Or Latino\"}]}],\"studyIds\":[\"brca_akt1_genie_2019\",\"brca_tcga_pan_can_atlas_2018\",\"skcm_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 1202870663, - "filterString": "Diagnosis Age: < x ≤ 4570Mutation Count: < x ≤ 2080Ethnicity Category:Hispanic Or Latino", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE", - "values": [ - { - "start": 45, - "end": 50 - }, - { - "start": 50, - "end": 55 - }, - { - "start": 55, - "end": 60 - }, - { - "start": 60, - "end": 65 - }, - { - "start": 65, - "end": 70 - } - ] - }, - { - "attributeId": "MUTATION_COUNT", - "values": [ - { - "start": 20, - "end": 40 - }, - { - "start": 40, - "end": 60 - }, - { - "start": 60, - "end": 80 - } - ] - }, - { - "attributeId": "ETHNICITY", - "values": [ - { - "value": "Hispanic Or Latino" - } - ] - } - ], - "studyIds": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/cna-genes/fetch?", - "label": "CNAGenes", - "studies": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "filterUrl": "/study/summary?id=brca_akt1_genie_2019%2Cbrca_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE\",\"values\":[{\"start\":45,\"end\":50},{\"start\":50,\"end\":55},{\"start\":55,\"end\":60},{\"start\":60,\"end\":65},{\"start\":65,\"end\":70}]},{\"attributeId\":\"MUTATION_COUNT\",\"values\":[{\"start\":20,\"end\":40},{\"start\":40,\"end\":60},{\"start\":60,\"end\":80}]},{\"attributeId\":\"ETHNICITY\",\"values\":[{\"value\":\"Hispanic Or Latino\"}]}],\"studyIds\":[\"brca_akt1_genie_2019\",\"brca_tcga_pan_can_atlas_2018\",\"skcm_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 1487456861, - "filterString": "Diagnosis Age: < x ≤ 4570Mutation Count: < x ≤ 2080Ethnicity Category:Hispanic Or Latino", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE", - "values": [ - { - "start": 45, - "end": 50 - }, - { - "start": 50, - "end": 55 - }, - { - "start": 55, - "end": 60 - }, - { - "start": 60, - "end": 65 - }, - { - "start": 65, - "end": 70 - } - ] - }, - { - "attributeId": "MUTATION_COUNT", - "values": [ - { - "start": 20, - "end": 40 - }, - { - "start": 40, - "end": 60 - }, - { - "start": 60, - "end": 80 - } - ] - }, - { - "attributeId": "ETHNICITY", - "values": [ - { - "value": "Hispanic Or Latino" - } - ] - } - ], - "studyIds": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/filtered-samples/fetch?", - "label": "FilteredSamples", - "studies": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "filterUrl": "/study/summary?id=brca_akt1_genie_2019%2Cbrca_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE\",\"values\":[{\"start\":45,\"end\":50},{\"start\":50,\"end\":55},{\"start\":55,\"end\":60},{\"start\":60,\"end\":65},{\"start\":65,\"end\":70}]},{\"attributeId\":\"MUTATION_COUNT\",\"values\":[{\"start\":20,\"end\":40},{\"start\":40,\"end\":60},{\"start\":60,\"end\":80}]},{\"attributeId\":\"ETHNICITY\",\"values\":[{\"value\":\"Hispanic Or Latino\"}]}],\"studyIds\":[\"brca_akt1_genie_2019\",\"brca_tcga_pan_can_atlas_2018\",\"skcm_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 1663069993, - "filterString": "Diagnosis Age: < x ≤ 4570Mutation Count: < x ≤ 2080Ethnicity Category:Hispanic Or Latino", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE", - "values": [ - { - "start": 45, - "end": 50 - }, - { - "start": 50, - "end": 55 - }, - { - "start": 55, - "end": 60 - }, - { - "start": 60, - "end": 65 - }, - { - "start": 65, - "end": 70 - } - ] - }, - { - "attributeId": "MUTATION_COUNT", - "values": [ - { - "start": 20, - "end": 40 - }, - { - "start": 40, - "end": 60 - }, - { - "start": 60, - "end": 80 - } - ] - }, - { - "attributeId": "ETHNICITY", - "values": [ - { - "value": "Hispanic Or Latino" - } - ] - } - ], - "studyIds": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&", - "label": "ClinicalDataDensity", - "studies": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "filterUrl": "/study/summary?id=brca_akt1_genie_2019%2Cbrca_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE\",\"values\":[{\"start\":45,\"end\":50},{\"start\":50,\"end\":55},{\"start\":55,\"end\":60},{\"start\":60,\"end\":65},{\"start\":65,\"end\":70}]},{\"attributeId\":\"MUTATION_COUNT\",\"values\":[{\"start\":20,\"end\":40},{\"start\":40,\"end\":60},{\"start\":60,\"end\":80}]},{\"attributeId\":\"ETHNICITY\",\"values\":[{\"value\":\"Hispanic Or Latino\"}]}],\"studyIds\":[\"brca_akt1_genie_2019\",\"brca_tcga_pan_can_atlas_2018\",\"skcm_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": 1829867861, - "filterString": "Diagnosis Age: < x ≤ 4570Mutation Count: < x ≤ 2080Ethnicity Category:Hispanic Or Latino", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE", - "values": [ - { - "start": 45, - "end": 50 - }, - { - "start": 50, - "end": 55 - }, - { - "start": 55, - "end": 60 - }, - { - "start": 60, - "end": 65 - }, - { - "start": 65, - "end": 70 - } - ] - }, - { - "attributeId": "MUTATION_COUNT", - "values": [ - { - "start": 20, - "end": 40 - }, - { - "start": 40, - "end": 60 - }, - { - "start": 60, - "end": 80 - } - ] - }, - { - "attributeId": "ETHNICITY", - "values": [ - { - "value": "Hispanic Or Latino" - } - ] - } - ], - "studyIds": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/structuralvariant-genes/fetch?", - "label": "StructuralVariantGenes", - "studies": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "filterUrl": "/study/summary?id=brca_akt1_genie_2019%2Cbrca_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE\",\"values\":[{\"start\":45,\"end\":50},{\"start\":50,\"end\":55},{\"start\":55,\"end\":60},{\"start\":60,\"end\":65},{\"start\":65,\"end\":70}]},{\"attributeId\":\"MUTATION_COUNT\",\"values\":[{\"start\":20,\"end\":40},{\"start\":40,\"end\":60},{\"start\":60,\"end\":80}]},{\"attributeId\":\"ETHNICITY\",\"values\":[{\"value\":\"Hispanic Or Latino\"}]}],\"studyIds\":[\"brca_akt1_genie_2019\",\"brca_tcga_pan_can_atlas_2018\",\"skcm_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -1042210500, - "filterString": "Diagnosis Age: < x ≤ 4570Mutation Count: < x ≤ 2080Ethnicity Category:Hispanic Or Latino", - "data": { - "attributes": [ - { - "attributeId": "ETHNICITY" - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE", - "values": [ - { - "start": 45, - "end": 50 - }, - { - "start": 50, - "end": 55 - }, - { - "start": 55, - "end": 60 - }, - { - "start": 60, - "end": 65 - }, - { - "start": 65, - "end": 70 - } - ] - }, - { - "attributeId": "MUTATION_COUNT", - "values": [ - { - "start": 20, - "end": 40 - }, - { - "start": 40, - "end": 60 - }, - { - "start": 60, - "end": 80 - } - ] - } - ], - "studyIds": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-counts/fetch?", - "label": "ClinicalDataCounts", - "studies": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "filterUrl": "/study/summary?id=brca_akt1_genie_2019%2Cbrca_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE\",\"values\":[{\"start\":45,\"end\":50},{\"start\":50,\"end\":55},{\"start\":55,\"end\":60},{\"start\":60,\"end\":65},{\"start\":65,\"end\":70}]},{\"attributeId\":\"MUTATION_COUNT\",\"values\":[{\"start\":20,\"end\":40},{\"start\":40,\"end\":60},{\"start\":60,\"end\":80}]},{\"attributeId\":\"ETHNICITY\",\"values\":[{\"value\":\"Hispanic Or Latino\"}]}],\"studyIds\":[\"brca_akt1_genie_2019\",\"brca_tcga_pan_can_atlas_2018\",\"skcm_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -1680440837, - "filterString": "Diagnosis Age: < x ≤ 4570Mutation Count: < x ≤ 2080Ethnicity Category:Hispanic Or Latino", - "data": { - "attributes": [ - { - "attributeId": "OS_STATUS" - }, - { - "attributeId": "DFS_STATUS" - }, - { - "attributeId": "DSS_STATUS" - }, - { - "attributeId": "PFS_STATUS" - }, - { - "attributeId": "SUBTYPE" - }, - { - "attributeId": "TUMOR_TYPE" - }, - { - "attributeId": "SAMPLE_COUNT" - }, - { - "attributeId": "SEX" - }, - { - "attributeId": "AKT_MUTATION_STATUS" - }, - { - "attributeId": "SAMPLE_TYPE" - }, - { - "attributeId": "RACE" - }, - { - "attributeId": "CANCER_TYPE_DETAILED" - }, - { - "attributeId": "AKT_INHIBITOR_YN" - }, - { - "attributeId": "AJCC_STAGE" - }, - { - "attributeId": "ADDITIONAL_SEQUENCING" - }, - { - "attributeId": "CANCER_TYPE" - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE", - "values": [ - { - "start": 45, - "end": 50 - }, - { - "start": 50, - "end": 55 - }, - { - "start": 55, - "end": 60 - }, - { - "start": 60, - "end": 65 - }, - { - "start": 65, - "end": 70 - } - ] - }, - { - "attributeId": "MUTATION_COUNT", - "values": [ - { - "start": 20, - "end": 40 - }, - { - "start": 40, - "end": 60 - }, - { - "start": 60, - "end": 80 - } - ] - } - ], - "studyIds": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-counts/fetch?", - "label": "ClinicalDataCounts", - "studies": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "filterUrl": "/study/summary?id=brca_akt1_genie_2019%2Cbrca_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE\",\"values\":[{\"start\":45,\"end\":50},{\"start\":50,\"end\":55},{\"start\":55,\"end\":60},{\"start\":60,\"end\":65},{\"start\":65,\"end\":70}]},{\"attributeId\":\"MUTATION_COUNT\",\"values\":[{\"start\":20,\"end\":40},{\"start\":40,\"end\":60},{\"start\":60,\"end\":80}]},{\"attributeId\":\"ETHNICITY\",\"values\":[{\"value\":\"Hispanic Or Latino\"}]}],\"studyIds\":[\"brca_akt1_genie_2019\",\"brca_tcga_pan_can_atlas_2018\",\"skcm_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -467228120, - "filterString": "Diagnosis Age: < x ≤ 4570Mutation Count: < x ≤ 2080Ethnicity Category:Hispanic Or Latino", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE", - "values": [ - { - "start": 45, - "end": 50 - }, - { - "start": 50, - "end": 55 - }, - { - "start": 55, - "end": 60 - }, - { - "start": 60, - "end": 65 - }, - { - "start": 65, - "end": 70 - } - ] - }, - { - "attributeId": "MUTATION_COUNT", - "values": [ - { - "start": 20, - "end": 40 - }, - { - "start": 40, - "end": 60 - }, - { - "start": 60, - "end": 80 - } - ] - }, - { - "attributeId": "ETHNICITY", - "values": [ - { - "value": "Hispanic Or Latino" - } - ] - } - ], - "studyIds": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/molecular-profile-sample-counts/fetch?", - "label": "MolecularProfileSample", - "studies": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "filterUrl": "/study/summary?id=brca_akt1_genie_2019%2Cbrca_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE\",\"values\":[{\"start\":45,\"end\":50},{\"start\":50,\"end\":55},{\"start\":55,\"end\":60},{\"start\":60,\"end\":65},{\"start\":65,\"end\":70}]},{\"attributeId\":\"MUTATION_COUNT\",\"values\":[{\"start\":20,\"end\":40},{\"start\":40,\"end\":60},{\"start\":60,\"end\":80}]},{\"attributeId\":\"ETHNICITY\",\"values\":[{\"value\":\"Hispanic Or Latino\"}]}],\"studyIds\":[\"brca_akt1_genie_2019\",\"brca_tcga_pan_can_atlas_2018\",\"skcm_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -668421227, - "filterString": "Diagnosis Age: < x ≤ 4570Mutation Count: < x ≤ 2080Ethnicity Category:Hispanic Or Latino", - "data": { - "attributes": [ - { - "attributeId": "MUTATION_COUNT", - "disableLogScale": false, - "showNA": false - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE", - "values": [ - { - "start": 45, - "end": 50 - }, - { - "start": 50, - "end": 55 - }, - { - "start": 55, - "end": 60 - }, - { - "start": 60, - "end": 65 - }, - { - "start": 65, - "end": 70 - } - ] - }, - { - "attributeId": "MUTATION_COUNT", - "values": [ - { - "start": 20, - "end": 40 - }, - { - "start": 40, - "end": 60 - }, - { - "start": 60, - "end": 80 - } - ] - }, - { - "attributeId": "ETHNICITY", - "values": [ - { - "value": "Hispanic Or Latino" - } - ] - } - ], - "studyIds": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&", - "label": "ClinicalDataBin", - "studies": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "filterUrl": "/study/summary?id=brca_akt1_genie_2019%2Cbrca_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE\",\"values\":[{\"start\":45,\"end\":50},{\"start\":50,\"end\":55},{\"start\":55,\"end\":60},{\"start\":60,\"end\":65},{\"start\":65,\"end\":70}]},{\"attributeId\":\"MUTATION_COUNT\",\"values\":[{\"start\":20,\"end\":40},{\"start\":40,\"end\":60},{\"start\":60,\"end\":80}]},{\"attributeId\":\"ETHNICITY\",\"values\":[{\"value\":\"Hispanic Or Latino\"}]}],\"studyIds\":[\"brca_akt1_genie_2019\",\"brca_tcga_pan_can_atlas_2018\",\"skcm_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -308561323, - "filterString": "Diagnosis Age: < x ≤ 4570Mutation Count: < x ≤ 2080Ethnicity Category:Hispanic Or Latino", - "skip": "Should be fixed by NA backend fix", - "data": { - "attributes": [ - { - "attributeId": "FRACTION_GENOME_ALTERED", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "MSI_SCORE_MANTIS", - "disableLogScale": false, - "showNA": false, - "customBins": [ - 0.4, - 0.6 - ] - }, - { - "attributeId": "MSI_SENSOR_SCORE", - "disableLogScale": false, - "showNA": false, - "customBins": [ - 4, - 10 - ] - }, - { - "attributeId": "AGE_AT_MET_DIAGNOSIS", - "disableLogScale": false, - "showNA": false - }, - { - "attributeId": "PRIMARY_DX_DATE_INT", - "disableLogScale": false, - "showNA": false - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE", - "values": [ - { - "start": 45, - "end": 50 - }, - { - "start": 50, - "end": 55 - }, - { - "start": 55, - "end": 60 - }, - { - "start": 60, - "end": 65 - }, - { - "start": 65, - "end": 70 - } - ] - }, - { - "attributeId": "MUTATION_COUNT", - "values": [ - { - "start": 20, - "end": 40 - }, - { - "start": 40, - "end": 60 - }, - { - "start": 60, - "end": 80 - } - ] - }, - { - "attributeId": "ETHNICITY", - "values": [ - { - "value": "Hispanic Or Latino" - } - ] - } - ], - "studyIds": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&", - "label": "ClinicalDataBin", - "studies": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "filterUrl": "/study/summary?id=brca_akt1_genie_2019%2Cbrca_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE\",\"values\":[{\"start\":45,\"end\":50},{\"start\":50,\"end\":55},{\"start\":55,\"end\":60},{\"start\":60,\"end\":65},{\"start\":65,\"end\":70}]},{\"attributeId\":\"MUTATION_COUNT\",\"values\":[{\"start\":20,\"end\":40},{\"start\":40,\"end\":60},{\"start\":60,\"end\":80}]},{\"attributeId\":\"ETHNICITY\",\"values\":[{\"value\":\"Hispanic Or Latino\"}]}],\"studyIds\":[\"brca_akt1_genie_2019\",\"brca_tcga_pan_can_atlas_2018\",\"skcm_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -1698801537, - "filterString": "Diagnosis Age: < x ≤ 4570Mutation Count: < x ≤ 2080Ethnicity Category:Hispanic Or Latino", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE", - "values": [ - { - "start": 45, - "end": 50 - }, - { - "start": 50, - "end": 55 - }, - { - "start": 55, - "end": 60 - }, - { - "start": 60, - "end": 65 - }, - { - "start": 65, - "end": 70 - } - ] - }, - { - "attributeId": "MUTATION_COUNT", - "values": [ - { - "start": 20, - "end": 40 - }, - { - "start": 40, - "end": 60 - }, - { - "start": 60, - "end": 80 - } - ] - }, - { - "attributeId": "ETHNICITY", - "values": [ - { - "value": "Hispanic Or Latino" - } - ] - } - ], - "studyIds": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/mutated-genes/fetch?", - "label": "MutatedGenes", - "studies": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "filterUrl": "/study/summary?id=brca_akt1_genie_2019%2Cbrca_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE\",\"values\":[{\"start\":45,\"end\":50},{\"start\":50,\"end\":55},{\"start\":55,\"end\":60},{\"start\":60,\"end\":65},{\"start\":65,\"end\":70}]},{\"attributeId\":\"MUTATION_COUNT\",\"values\":[{\"start\":20,\"end\":40},{\"start\":40,\"end\":60},{\"start\":60,\"end\":80}]},{\"attributeId\":\"ETHNICITY\",\"values\":[{\"value\":\"Hispanic Or Latino\"}]}],\"studyIds\":[\"brca_akt1_genie_2019\",\"brca_tcga_pan_can_atlas_2018\",\"skcm_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -2100211505, - "filterString": "Diagnosis Age: < x ≤ 4570Mutation Count: < x ≤ 2080Ethnicity Category:Hispanic Or Latino", - "data": { - "clinicalDataFilters": [ - { - "attributeId": "AGE", - "values": [ - { - "start": 45, - "end": 50 - }, - { - "start": 50, - "end": 55 - }, - { - "start": 55, - "end": 60 - }, - { - "start": 60, - "end": 65 - }, - { - "start": 65, - "end": 70 - } - ] - }, - { - "attributeId": "MUTATION_COUNT", - "values": [ - { - "start": 20, - "end": 40 - }, - { - "start": 40, - "end": 60 - }, - { - "start": 60, - "end": 80 - } - ] - }, - { - "attributeId": "ETHNICITY", - "values": [ - { - "value": "Hispanic Or Latino" - } - ] - } - ], - "studyIds": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - }, - "url": "/api/column-store/sample-lists-counts/fetch?", - "label": "CaseList", - "studies": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "filterUrl": "/study/summary?id=brca_akt1_genie_2019%2Cbrca_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE\",\"values\":[{\"start\":45,\"end\":50},{\"start\":50,\"end\":55},{\"start\":55,\"end\":60},{\"start\":60,\"end\":65},{\"start\":65,\"end\":70}]},{\"attributeId\":\"MUTATION_COUNT\",\"values\":[{\"start\":20,\"end\":40},{\"start\":40,\"end\":60},{\"start\":60,\"end\":80}]},{\"attributeId\":\"ETHNICITY\",\"values\":[{\"value\":\"Hispanic Or Latino\"}]}],\"studyIds\":[\"brca_akt1_genie_2019\",\"brca_tcga_pan_can_atlas_2018\",\"skcm_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - }, - { - "hash": -1464683354, - "filterString": "Diagnosis Age: < x ≤ 4570Mutation Count: < x ≤ 2080Ethnicity Category:Hispanic Or Latino", - "data": { - "attributes": [ - { - "attributeId": "ETHNICITY" - } - ], - "studyViewFilter": { - "clinicalDataFilters": [ - { - "attributeId": "AGE", - "values": [ - { - "start": 45, - "end": 50 - }, - { - "start": 50, - "end": 55 - }, - { - "start": 55, - "end": 60 - }, - { - "start": 60, - "end": 65 - }, - { - "start": 65, - "end": 70 - } - ] - }, - { - "attributeId": "MUTATION_COUNT", - "values": [ - { - "start": 20, - "end": 40 - }, - { - "start": 40, - "end": 60 - }, - { - "start": 60, - "end": 80 - } - ] - }, - { - "attributeId": "ETHNICITY", - "values": [ - { - "value": "Hispanic Or Latino" - } - ] - } - ], - "studyIds": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "alterationFilter": { - "copyNumberAlterationEventTypes": { - "AMP": true, - "HOMDEL": true - }, - "mutationEventTypes": { - "any": true - }, - "structuralVariants": null, - "includeDriver": true, - "includeVUS": true, - "includeUnknownOncogenicity": true, - "includeUnknownTier": true, - "includeGermline": true, - "includeSomatic": true, - "includeUnknownStatus": true, - "tiersBooleanMap": {} - } - } - }, - "url": "/api/column-store/clinical-data-counts/fetch?", - "label": "ClinicalDataCounts", - "studies": [ - "brca_akt1_genie_2019", - "brca_tcga_pan_can_atlas_2018", - "skcm_tcga_pan_can_atlas_2018" - ], - "filterUrl": "/study/summary?id=brca_akt1_genie_2019%2Cbrca_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018#filterJson={\"clinicalDataFilters\":[{\"attributeId\":\"AGE\",\"values\":[{\"start\":45,\"end\":50},{\"start\":50,\"end\":55},{\"start\":55,\"end\":60},{\"start\":60,\"end\":65},{\"start\":65,\"end\":70}]},{\"attributeId\":\"MUTATION_COUNT\",\"values\":[{\"start\":20,\"end\":40},{\"start\":40,\"end\":60},{\"start\":60,\"end\":80}]},{\"attributeId\":\"ETHNICITY\",\"values\":[{\"value\":\"Hispanic Or Latino\"}]}],\"studyIds\":[\"brca_akt1_genie_2019\",\"brca_tcga_pan_can_atlas_2018\",\"skcm_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}" - } - ] - } -] \ No newline at end of file diff --git a/apiTests/specs/custom-data-bin-counts-filter.json b/apiTests/specs/custom-data-bin-counts-filter.json deleted file mode 100644 index 0230f49eb94..00000000000 --- a/apiTests/specs/custom-data-bin-counts-filter.json +++ /dev/null @@ -1,369 +0,0 @@ -[ - - - - { - "name":"filter on one value from one numerical custom data filter for two studies", - "note":"testing one numerical custom data filter of one value on two tcga studies", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdb47955a443698dbcfeb\",\"values\":[{\"start\":1,\"end\":1}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Custom Data 1:1", - "studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"], - "assertResponse":[ - { - "attributeId": "PATH_M_STAGE", - "counts": [ - { - "value": "M0", - "count": 1 - }, - { - "value": "NA", - "count": 2 - } - ] - } - ], - "tests":[ - {"hash":418622245,"filterString":"Custom Data 1:1","data":{"customDataFilters":[{"attributeId":"66ccdb47955a443698dbcfeb","values":[{"start":1,"end":1}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdb47955a443698dbcfeb\",\"values\":[{\"start\":1,\"end\":1}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":678693631,"filterString":"Custom Data 1:1","data":{"customDataFilters":[{"attributeId":"66ccdb47955a443698dbcfeb","values":[{"start":1,"end":1}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdb47955a443698dbcfeb\",\"values\":[{\"start\":1,\"end\":1}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1520219763,"filterString":"Custom Data 1:1","data":{"customDataFilters":[{"attributeId":"66ccdb47955a443698dbcfeb","values":[{"start":1,"end":1}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdb47955a443698dbcfeb\",\"values\":[{\"start\":1,\"end\":1}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1522651462,"filterString":"Custom Data 1:1","data":{"customDataFilters":[{"attributeId":"66ccdb47955a443698dbcfeb","values":[{"start":1,"end":1}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdb47955a443698dbcfeb\",\"values\":[{\"start\":1,\"end\":1}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1637985053,"filterString":"Custom Data 1:1","data":{"customDataFilters":[{"attributeId":"66ccdb47955a443698dbcfeb","values":[{"start":1,"end":1}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdb47955a443698dbcfeb\",\"values\":[{\"start\":1,\"end\":1}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1541821463,"filterString":"Custom Data 1:1","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccdb47955a443698dbcfeb","values":[{"start":1,"end":1}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdb47955a443698dbcfeb\",\"values\":[{\"start\":1,\"end\":1}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-821508532,"filterString":"Custom Data 1:1","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"SUBTYPE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccdb47955a443698dbcfeb","values":[{"start":1,"end":1}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdb47955a443698dbcfeb\",\"values\":[{\"start\":1,\"end\":1}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-102244533,"filterString":"Custom Data 1:1","data":{"customDataFilters":[{"attributeId":"66ccdb47955a443698dbcfeb","values":[{"start":1,"end":1}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdb47955a443698dbcfeb\",\"values\":[{\"start\":1,\"end\":1}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1199065875,"filterString":"Custom Data 1:1","data":{"customDataFilters":[{"attributeId":"66ccdb47955a443698dbcfeb","values":[{"start":1,"end":1}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdb47955a443698dbcfeb\",\"values\":[{\"start\":1,\"end\":1}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - - - - { - "name":"filter on one range from one numerical custom data filter for two studies", - "note":"testing one numerical custom data filter of a range of values on two tcga studies", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Custom Data 1: ≤ x ≤ 12", - "studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"], - "assertResponse":[ - { - "attributeId": "PATH_M_STAGE", - "counts": [ - { - "value": "M0", - "count": 2 - }, - { - "value": "M1B", - "count": 1 - }, - { - "value": "NA", - "count": 4 - } - ] - } - ], - "tests":[ - {"hash":501384332,"filterString":"Custom Data 1: ≤ x ≤ 12","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":557019544,"filterString":"Custom Data 1: ≤ x ≤ 12","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1254714393,"filterString":"Custom Data 1: ≤ x ≤ 12","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-757451850,"filterString":"Custom Data 1: ≤ x ≤ 12","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-2103178783,"filterString":"Custom Data 1: ≤ x ≤ 12","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1297492922,"filterString":"Custom Data 1: ≤ x ≤ 12","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1854970704,"filterString":"Custom Data 1: ≤ x ≤ 12","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-706009544,"filterString":"Custom Data 1: ≤ x ≤ 12","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-610618304,"filterString":"Custom Data 1: ≤ x ≤ 12","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - - - - { - "name":"filter on two ranges from two numerical custom data filters for two studies", - "note":"testing two numerical custom data filters of two ranges of values on two tcga studies", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Custom Data 1: ≤ x ≤ 12Custom Data 2: ≤ x ≤ 34", - "studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"], - "assertResponse":[ - { - "attributeId": "PATH_M_STAGE", - "counts": [ - { - "value": "M0", - "count": 2 - } - ] - } - ], - "tests":[ - {"hash":30346742,"filterString":"Custom Data 1: ≤ x ≤ 12Custom Data 2: ≤ x ≤ 34","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":563253048,"filterString":"Custom Data 1: ≤ x ≤ 12Custom Data 2: ≤ x ≤ 34","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":686960538,"filterString":"Custom Data 1: ≤ x ≤ 12Custom Data 2: ≤ x ≤ 34","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":698458271,"filterString":"Custom Data 1: ≤ x ≤ 12Custom Data 2: ≤ x ≤ 34","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1522791666,"filterString":"Custom Data 1: ≤ x ≤ 12Custom Data 2: ≤ x ≤ 34","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-326774441,"filterString":"Custom Data 1: ≤ x ≤ 12Custom Data 2: ≤ x ≤ 34","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-2096736380,"filterString":"Custom Data 1: ≤ x ≤ 12Custom Data 2: ≤ x ≤ 34","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-713212562,"filterString":"Custom Data 1: ≤ x ≤ 12Custom Data 2: ≤ x ≤ 34","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1496938882,"filterString":"Custom Data 1: ≤ x ≤ 12Custom Data 2: ≤ x ≤ 34","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":1,"end":1},{"start":2,"end":2}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - { - "name":"filter on NA value from one numerical custom data filters for two studies", - "note":"testing one numerical custom data filter NA value on two tcga studies", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccec22955a443698dbcfef\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Custom Data 1:NA", - "studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"], - "assertResponse":[ - { - "attributeId": "PATH_M_STAGE", - "counts": [ - { - "value": "M0", - "count": 438 - }, - { - "value": "M1", - "count": 69 - }, - { - "value": "MX", - "count": 62 - }, - { - "value": "M1A", - "count": 10 - }, - { - "value": "M1B", - "count": 2 - }, - { - "value": "NA", - "count": 518 - } - ] - } - ], - "tests":[ - {"hash":339834269,"filterString":"Custom Data 1:NA","data":{"customDataFilters":[{"attributeId":"66ccec22955a443698dbcfef","values":[{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccec22955a443698dbcfef\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":754370467,"filterString":"Custom Data 1:NA","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccec22955a443698dbcfef","values":[{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccec22955a443698dbcfef\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1305299561,"filterString":"Custom Data 1:NA","data":{"customDataFilters":[{"attributeId":"66ccec22955a443698dbcfef","values":[{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccec22955a443698dbcfef\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1309793679,"filterString":"Custom Data 1:NA","data":{"customDataFilters":[{"attributeId":"66ccec22955a443698dbcfef","values":[{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccec22955a443698dbcfef\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1348752016,"filterString":"Custom Data 1:NA","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccec22955a443698dbcfef","values":[{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccec22955a443698dbcfef\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1472052757,"filterString":"Custom Data 1:NA","data":{"customDataFilters":[{"attributeId":"66ccec22955a443698dbcfef","values":[{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccec22955a443698dbcfef\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1496979176,"filterString":"Custom Data 1:NA","data":{"customDataFilters":[{"attributeId":"66ccec22955a443698dbcfef","values":[{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccec22955a443698dbcfef\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-778603201,"filterString":"Custom Data 1:NA","data":{"customDataFilters":[{"attributeId":"66ccec22955a443698dbcfef","values":[{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccec22955a443698dbcfef\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-619194809,"filterString":"Custom Data 1:NA","data":{"customDataFilters":[{"attributeId":"66ccec22955a443698dbcfef","values":[{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccec22955a443698dbcfef\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - { - "name":"filter on NA and non-NA value from one numerical custom data filter for two studies", - "note":"testing one numerical custom data filter of a NA and non-NA values on two tcga studies", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Custom Data 1:NA3, ", - "studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"], - "assertResponse":[ - { - "attributeId": "PATH_M_STAGE", - "counts": [ - { - "value": "M0", - "count": 438 - }, - { - "value": "M1", - "count": 69 - }, - { - "value": "MX", - "count": 62 - }, - { - "value": "M1A", - "count": 11 - }, - { - "value": "M1B", - "count": 2 - }, - { - "value": "NA", - "count": 519 - } - ] - } - ], - "tests":[ - {"hash":174452477,"filterString":"Custom Data 1:NA3, ","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":478055151,"filterString":"Custom Data 1:NA3, ","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":486060333,"filterString":"Custom Data 1:NA3, ","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1540742773,"filterString":"Custom Data 1:NA3, ","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1732866902,"filterString":"Custom Data 1:NA3, ","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-980559746,"filterString":"Custom Data 1:NA3, ","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1727290565,"filterString":"Custom Data 1:NA3, ","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1079023485,"filterString":"Custom Data 1:NA3, ","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1738524363,"filterString":"Custom Data 1:NA3, ","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - - - - { - "name":"filter on NA and non-NA ranges from two numerical custom data filters for two studies", - "note":"testing two numerical custom data filters of two ranges of NA and non-NA values on two tcga studies", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Custom Data 1:NA3, Custom Data 2: ≤ x ≤ NA34, ", - "studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"], - "assertResponse":[ - { - "attributeId": "PATH_M_STAGE", - "counts": [ - { - "value": "M0", - "count": 438 - }, - { - "value": "M1", - "count": 69 - }, - { - "value": "MX", - "count": 61 - }, - { - "value": "M1A", - "count": 11 - }, - { - "value": "M1B", - "count": 2 - }, - { - "value": "NA", - "count": 518 - } - ] - } - ], - "tests":[ - {"hash":765505771,"filterString":"Custom Data 1:NA3, Custom Data 2: ≤ x ≤ NA34, ","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1105630905,"filterString":"Custom Data 1:NA3, Custom Data 2: ≤ x ≤ NA34, ","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1366413063,"filterString":"Custom Data 1:NA3, Custom Data 2: ≤ x ≤ NA34, ","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1905957431,"filterString":"Custom Data 1:NA3, Custom Data 2: ≤ x ≤ NA34, ","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-468408875,"filterString":"Custom Data 1:NA3, Custom Data 2: ≤ x ≤ NA34, ","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-192671518,"filterString":"Custom Data 1:NA3, Custom Data 2: ≤ x ≤ NA34, ","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-829483558,"filterString":"Custom Data 1:NA3, Custom Data 2: ≤ x ≤ NA34, ","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1186157391,"filterString":"Custom Data 1:NA3, Custom Data 2: ≤ x ≤ NA34, ","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-548915327,"filterString":"Custom Data 1:NA3, Custom Data 2: ≤ x ≤ NA34, ","data":{"customDataFilters":[{"attributeId":"66ccdd8a955a443698dbcfed","values":[{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]},{"attributeId":"66cce0eb955a443698dbcfee","values":[{"start":3,"end":3},{"start":4,"end":4},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-CS-4944-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-CS-4945-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"1"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccdd8a955a443698dbcfed\",\"values\":[{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66cce0eb955a443698dbcfee\",\"values\":[{\"start\":3,\"end\":3},{\"start\":4,\"end\":4},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - - { - "name":"filter on NA and non-NA ranges from two numerical custom data filters", - "note":"testing two numerical custom data filters of two ranges of NA and non-NA values on one tcga study", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf430955a443698dbcff4\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66ccf437955a443698dbcff5\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Custom Data 1: ≤ x ≤ NA13, Custom Data 2: ≤ x ≤ 14", - "studies":["coadread_tcga_pan_can_atlas_2018"], - "assertResponse":[ - { - "attributeId": "PATH_M_STAGE", - "counts": [ - { - "value": "M0", - "count": 2 - }, - { - "value": "MX", - "count": 1 - }, - { - "value": "M1B", - "count": 1 - }, - { - "value": "M1A", - "count": 1 - }, - { - "value": "NA", - "count": 2 - } - ] - } - ], - "tests":[ - {"hash":427644381,"filterString":"Custom Data 1: ≤ x ≤ NA13, Custom Data 2: ≤ x ≤ 14","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"SUBTYPE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccf430955a443698dbcff4","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"}]},{"attributeId":"66ccf437955a443698dbcff5","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf430955a443698dbcff4\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66ccf437955a443698dbcff5\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":905935608,"filterString":"Custom Data 1: ≤ x ≤ NA13, Custom Data 2: ≤ x ≤ 14","data":{"customDataFilters":[{"attributeId":"66ccf430955a443698dbcff4","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"}]},{"attributeId":"66ccf437955a443698dbcff5","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf430955a443698dbcff4\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66ccf437955a443698dbcff5\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1286716938,"filterString":"Custom Data 1: ≤ x ≤ NA13, Custom Data 2: ≤ x ≤ 14","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccf430955a443698dbcff4","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"}]},{"attributeId":"66ccf437955a443698dbcff5","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf430955a443698dbcff4\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66ccf437955a443698dbcff5\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1649516672,"filterString":"Custom Data 1: ≤ x ≤ NA13, Custom Data 2: ≤ x ≤ 14","data":{"customDataFilters":[{"attributeId":"66ccf430955a443698dbcff4","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"}]},{"attributeId":"66ccf437955a443698dbcff5","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf430955a443698dbcff4\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66ccf437955a443698dbcff5\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1739292769,"filterString":"Custom Data 1: ≤ x ≤ NA13, Custom Data 2: ≤ x ≤ 14","data":{"customDataFilters":[{"attributeId":"66ccf430955a443698dbcff4","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"}]},{"attributeId":"66ccf437955a443698dbcff5","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf430955a443698dbcff4\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66ccf437955a443698dbcff5\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1793634446,"filterString":"Custom Data 1: ≤ x ≤ NA13, Custom Data 2: ≤ x ≤ 14","data":{"customDataFilters":[{"attributeId":"66ccf430955a443698dbcff4","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"}]},{"attributeId":"66ccf437955a443698dbcff5","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf430955a443698dbcff4\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66ccf437955a443698dbcff5\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1810417744,"filterString":"Custom Data 1: ≤ x ≤ NA13, Custom Data 2: ≤ x ≤ 14","data":{"customDataFilters":[{"attributeId":"66ccf430955a443698dbcff4","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"}]},{"attributeId":"66ccf437955a443698dbcff5","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf430955a443698dbcff4\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66ccf437955a443698dbcff5\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":2037606724,"filterString":"Custom Data 1: ≤ x ≤ NA13, Custom Data 2: ≤ x ≤ 14","data":{"customDataFilters":[{"attributeId":"66ccf430955a443698dbcff4","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"}]},{"attributeId":"66ccf437955a443698dbcff5","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf430955a443698dbcff4\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66ccf437955a443698dbcff5\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":2114122888,"filterString":"Custom Data 1: ≤ x ≤ NA13, Custom Data 2: ≤ x ≤ 14","data":{"customDataFilters":[{"attributeId":"66ccf430955a443698dbcff4","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"value":"NA"}],"datatype":"NUMBER","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"}]},{"attributeId":"66ccf437955a443698dbcff5","values":[{"start":1,"end":1},{"start":2,"end":2},{"start":3,"end":3},{"start":4,"end":4}],"datatype":"NUMBER","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"3"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"1"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"4"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"2"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf430955a443698dbcff4\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"value\":\"NA\"}]},{\"attributeId\":\"66ccf437955a443698dbcff5\",\"values\":[{\"start\":1,\"end\":1},{\"start\":2,\"end\":2},{\"start\":3,\"end\":3},{\"start\":4,\"end\":4}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - } - -] \ No newline at end of file diff --git a/apiTests/specs/custom-data-counts-filter.json b/apiTests/specs/custom-data-counts-filter.json deleted file mode 100644 index 1dbf76ef7ad..00000000000 --- a/apiTests/specs/custom-data-counts-filter.json +++ /dev/null @@ -1,377 +0,0 @@ -[ - - { - "name":"filter on one value from one categorical custom data filter", - "note":"testing one categorical custom data filter of one value on one tcga study", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Custom Data 1:brown", - "studies":["coadread_tcga_pan_can_atlas_2018"], - "assertResponse":[ - { - "attributeId": "PATH_M_STAGE", - "counts": [ - { - "value": "M0", - "count": 2 - }, - { - "value": "NA", - "count": 1 - } - ] - } - ], - "tests":[ - {"hash":312314842,"filterString":"Custom Data 1:brown","data":{"customDataFilters":[{"attributeId":"66ccf867955a443698dbcff7","values":[{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf867955a443698dbcff7\",\"values\":[{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":673375402,"filterString":"Custom Data 1:brown","data":{"customDataFilters":[{"attributeId":"66ccf867955a443698dbcff7","values":[{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf867955a443698dbcff7\",\"values\":[{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1033942632,"filterString":"Custom Data 1:brown","data":{"customDataFilters":[{"attributeId":"66ccf867955a443698dbcff7","values":[{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf867955a443698dbcff7\",\"values\":[{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1228886100,"filterString":"Custom Data 1:brown","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccf867955a443698dbcff7","values":[{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf867955a443698dbcff7\",\"values\":[{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1281389110,"filterString":"Custom Data 1:brown","data":{"customDataFilters":[{"attributeId":"66ccf867955a443698dbcff7","values":[{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf867955a443698dbcff7\",\"values\":[{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-560317715,"filterString":"Custom Data 1:brown","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"RACE"},{"attributeId":"SEX"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"ETHNICITY"},{"attributeId":"OS_STATUS"}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccf867955a443698dbcff7","values":[{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf867955a443698dbcff7\",\"values\":[{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1697313733,"filterString":"Custom Data 1:brown","data":{"customDataFilters":[{"attributeId":"66ccf867955a443698dbcff7","values":[{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf867955a443698dbcff7\",\"values\":[{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1118688942,"filterString":"Custom Data 1:brown","data":{"customDataFilters":[{"attributeId":"66ccf867955a443698dbcff7","values":[{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf867955a443698dbcff7\",\"values\":[{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-720636062,"filterString":"Custom Data 1:brown","data":{"customDataFilters":[{"attributeId":"66ccf867955a443698dbcff7","values":[{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf867955a443698dbcff7\",\"values\":[{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - - - { - "name":"filter on two values from one categorical custom data filter", - "note":"testing one categorical custom data filter of two values on one tcga study", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Custom Data 1:brown OR blue", - "studies":["coadread_tcga_pan_can_atlas_2018"], - "assertResponse":[ - { - "attributeId": "PATH_M_STAGE", - "counts": [ - { - "value": "M0", - "count": 2 - }, - { - "value": "M1B", - "count": 1 - }, - { - "value": "M1A", - "count": 1 - }, - { - "value": "NA", - "count": 1 - } - ] - } - ], - "tests":[ - {"hash":545045433,"filterString":"Custom Data 1:brown OR blue","data":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":622148073,"filterString":"Custom Data 1:brown OR blue","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":852259554,"filterString":"Custom Data 1:brown OR blue","data":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1061545187,"filterString":"Custom Data 1:brown OR blue","data":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1064825610,"filterString":"Custom Data 1:brown OR blue","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1193468041,"filterString":"Custom Data 1:brown OR blue","data":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1145081809,"filterString":"Custom Data 1:brown OR blue","data":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1975471089,"filterString":"Custom Data 1:brown OR blue","data":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1152947775,"filterString":"Custom Data 1:brown OR blue","data":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - - - { - "name":"filter on values from two categorical custom data filters", - "note":"testing two categorical custom data filters on one tcga study", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66c8f20b6704ad7736da5641\",\"values\":[{\"value\":\"black\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Custom Data 1:brown OR blueCustom Data 2:black", - "studies":["coadread_tcga_pan_can_atlas_2018"], - "assertResponse":[ - { - "attributeId": "PATH_M_STAGE", - "counts": [ - { - "value": "M0", - "count": 1 - }, - { - "value": "M1B", - "count": 1 - }, - { - "value": "M1A", - "count": 1 - } - ] - } - ], - "tests":[ - {"hash":264464087,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f20b6704ad7736da5641","values":[{"value":"black"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66c8f20b6704ad7736da5641\",\"values\":[{\"value\":\"black\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":430654219,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black","data":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f20b6704ad7736da5641","values":[{"value":"black"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66c8f20b6704ad7736da5641\",\"values\":[{\"value\":\"black\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":771185693,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black","data":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f20b6704ad7736da5641","values":[{"value":"black"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66c8f20b6704ad7736da5641\",\"values\":[{\"value\":\"black\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":916097460,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black","data":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f20b6704ad7736da5641","values":[{"value":"black"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66c8f20b6704ad7736da5641\",\"values\":[{\"value\":\"black\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1369241692,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f20b6704ad7736da5641","values":[{"value":"black"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66c8f20b6704ad7736da5641\",\"values\":[{\"value\":\"black\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-858045359,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black","data":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f20b6704ad7736da5641","values":[{"value":"black"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66c8f20b6704ad7736da5641\",\"values\":[{\"value\":\"black\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1384923935,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black","data":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f20b6704ad7736da5641","values":[{"value":"black"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66c8f20b6704ad7736da5641\",\"values\":[{\"value\":\"black\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1116575213,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black","data":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f20b6704ad7736da5641","values":[{"value":"black"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66c8f20b6704ad7736da5641\",\"values\":[{\"value\":\"black\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-2133908901,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black","data":{"customDataFilters":[{"attributeId":"66c8eeb56704ad7736da5640","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f20b6704ad7736da5641","values":[{"value":"black"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8eeb56704ad7736da5640\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66c8f20b6704ad7736da5641\",\"values\":[{\"value\":\"black\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - - - { - "name":"filter on NA value from one categorical custom data filter", - "note":"testing one categorical custom data filter of NA value on one tcga study", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Custom Data 1:NA", - "studies":["coadread_tcga_pan_can_atlas_2018"], - "assertResponse":[ - { - "attributeId": "PATH_M_STAGE", - "counts": [ - { - "value": "M0", - "count": 438 - }, - { - "value": "M1", - "count": 69 - }, - { - "value": "MX", - "count": 62 - }, - { - "value": "M1A", - "count": 10 - }, - { - "value": "M1B", - "count": 2 - }, - { - "value": "NA", - "count": 8 - } - ] - } - ], - "tests":[ - {"hash":5612331,"filterString":"Custom Data 1:NA","data":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1469853731,"filterString":"Custom Data 1:NA","data":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1691282374,"filterString":"Custom Data 1:NA","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-189652935,"filterString":"Custom Data 1:NA","data":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1351213633,"filterString":"Custom Data 1:NA","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-586981172,"filterString":"Custom Data 1:NA","data":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-729997819,"filterString":"Custom Data 1:NA","data":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-296670215,"filterString":"Custom Data 1:NA","data":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1523589773,"filterString":"Custom Data 1:NA","data":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - - - { - "name":"filter on NA and non-NA values from one categorical custom data filter", - "note":"testing one categorical custom data filter of NA and non-NA values on one tcga study", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"},{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Custom Data 1:NA OR brown", - "studies":["coadread_tcga_pan_can_atlas_2018"], - "assertResponse":[ - { - "attributeId": "PATH_M_STAGE", - "counts": [ - { - "value": "M0", - "count": 440 - }, - { - "value": "M1", - "count": 69 - }, - { - "value": "MX", - "count": 62 - }, - { - "value": "M1A", - "count": 10 - }, - { - "value": "M1B", - "count": 2 - }, - { - "value": "NA", - "count": 9 - } - ] - } - ], - "tests":[ - {"hash":1177917620,"filterString":"Custom Data 1:NA OR brown","data":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"},{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"},{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":2006011672,"filterString":"Custom Data 1:NA OR brown","data":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"},{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"},{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":2113305978,"filterString":"Custom Data 1:NA OR brown","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"},{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"},{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-764324949,"filterString":"Custom Data 1:NA OR brown","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"},{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"},{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1237941519,"filterString":"Custom Data 1:NA OR brown","data":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"},{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"},{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-236823616,"filterString":"Custom Data 1:NA OR brown","data":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"},{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"},{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-374914274,"filterString":"Custom Data 1:NA OR brown","data":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"},{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"},{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1513553528,"filterString":"Custom Data 1:NA OR brown","data":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"},{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"},{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-796594416,"filterString":"Custom Data 1:NA OR brown","data":{"customDataFilters":[{"attributeId":"66c8f44c6704ad7736da5642","values":[{"value":"NA"},{"value":"brown"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f44c6704ad7736da5642\",\"values\":[{\"value\":\"NA\"},{\"value\":\"brown\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - - - - { - "name":"filter on NA and non-NA values from two categorical custom data filter", - "note":"testing two categorical custom data filters of NA and non-NA values on one tcga study", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f7656704ad7736da5644\",\"values\":[{\"value\":\"brown\"},{\"value\":\"NA\"}]},{\"attributeId\":\"66c8f7716704ad7736da5645\",\"values\":[{\"value\":\"black\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Custom Data 1:brown OR NACustom Data 2:black OR NA", - "studies":["coadread_tcga_pan_can_atlas_2018"], - "assertResponse":[ - { - "attributeId": "PATH_M_STAGE", - "counts": [ - { - "value": "M0", - "count": 439 - }, - { - "value": "M1", - "count": 69 - }, - { - "value": "MX", - "count": 62 - }, - { - "value": "M1A", - "count": 10 - }, - { - "value": "M1B", - "count": 2 - }, - { - "value": "NA", - "count": 7 - } - ] - } - ], - "tests":[ - {"hash":239529000,"filterString":"Custom Data 1:brown OR NACustom Data 2:black OR NA","data":{"customDataFilters":[{"attributeId":"66c8f7656704ad7736da5644","values":[{"value":"brown"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f7716704ad7736da5645","values":[{"value":"black"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f7656704ad7736da5644\",\"values\":[{\"value\":\"brown\"},{\"value\":\"NA\"}]},{\"attributeId\":\"66c8f7716704ad7736da5645\",\"values\":[{\"value\":\"black\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":311010422,"filterString":"Custom Data 1:brown OR NACustom Data 2:black OR NA","data":{"customDataFilters":[{"attributeId":"66c8f7656704ad7736da5644","values":[{"value":"brown"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f7716704ad7736da5645","values":[{"value":"black"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f7656704ad7736da5644\",\"values\":[{\"value\":\"brown\"},{\"value\":\"NA\"}]},{\"attributeId\":\"66c8f7716704ad7736da5645\",\"values\":[{\"value\":\"black\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1080856338,"filterString":"Custom Data 1:brown OR NACustom Data 2:black OR NA","data":{"customDataFilters":[{"attributeId":"66c8f7656704ad7736da5644","values":[{"value":"brown"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f7716704ad7736da5645","values":[{"value":"black"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f7656704ad7736da5644\",\"values\":[{\"value\":\"brown\"},{\"value\":\"NA\"}]},{\"attributeId\":\"66c8f7716704ad7736da5645\",\"values\":[{\"value\":\"black\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-989223190,"filterString":"Custom Data 1:brown OR NACustom Data 2:black OR NA","data":{"customDataFilters":[{"attributeId":"66c8f7656704ad7736da5644","values":[{"value":"brown"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f7716704ad7736da5645","values":[{"value":"black"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f7656704ad7736da5644\",\"values\":[{\"value\":\"brown\"},{\"value\":\"NA\"}]},{\"attributeId\":\"66c8f7716704ad7736da5645\",\"values\":[{\"value\":\"black\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-311732972,"filterString":"Custom Data 1:brown OR NACustom Data 2:black OR NA","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66c8f7656704ad7736da5644","values":[{"value":"brown"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f7716704ad7736da5645","values":[{"value":"black"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f7656704ad7736da5644\",\"values\":[{\"value\":\"brown\"},{\"value\":\"NA\"}]},{\"attributeId\":\"66c8f7716704ad7736da5645\",\"values\":[{\"value\":\"black\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-2064702415,"filterString":"Custom Data 1:brown OR NACustom Data 2:black OR NA","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66c8f7656704ad7736da5644","values":[{"value":"brown"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f7716704ad7736da5645","values":[{"value":"black"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f7656704ad7736da5644\",\"values\":[{\"value\":\"brown\"},{\"value\":\"NA\"}]},{\"attributeId\":\"66c8f7716704ad7736da5645\",\"values\":[{\"value\":\"black\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1010204165,"filterString":"Custom Data 1:brown OR NACustom Data 2:black OR NA","data":{"customDataFilters":[{"attributeId":"66c8f7656704ad7736da5644","values":[{"value":"brown"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f7716704ad7736da5645","values":[{"value":"black"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f7656704ad7736da5644\",\"values\":[{\"value\":\"brown\"},{\"value\":\"NA\"}]},{\"attributeId\":\"66c8f7716704ad7736da5645\",\"values\":[{\"value\":\"black\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-800009830,"filterString":"Custom Data 1:brown OR NACustom Data 2:black OR NA","data":{"customDataFilters":[{"attributeId":"66c8f7656704ad7736da5644","values":[{"value":"brown"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f7716704ad7736da5645","values":[{"value":"black"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f7656704ad7736da5644\",\"values\":[{\"value\":\"brown\"},{\"value\":\"NA\"}]},{\"attributeId\":\"66c8f7716704ad7736da5645\",\"values\":[{\"value\":\"black\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1632432862,"filterString":"Custom Data 1:brown OR NACustom Data 2:black OR NA","data":{"customDataFilters":[{"attributeId":"66c8f7656704ad7736da5644","values":[{"value":"brown"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"}]},{"attributeId":"66c8f7716704ad7736da5645","values":[{"value":"black"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66c8f7656704ad7736da5644\",\"values\":[{\"value\":\"brown\"},{\"value\":\"NA\"}]},{\"attributeId\":\"66c8f7716704ad7736da5645\",\"values\":[{\"value\":\"black\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - - { - "name":"filter on NA and non-NA values from two categorical custom data filter for two studies", - "note":"testing two categorical custom data filters of NA and non-NA values on two tcga studies", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf311955a443698dbcff0\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66ccf319955a443698dbcff1\",\"values\":[{\"value\":\"black\"},{\"value\":\"blond\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Custom Data 1:brown OR blueCustom Data 2:black OR blond OR NA", - "studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"], - "assertResponse":[ - { - "attributeId": "PATH_M_STAGE", - "counts": [ - { - "value": "M0", - "count": 2 - }, - { - "value": "M1B", - "count": 1 - }, - { - "value": "M1A", - "count": 1 - }, - { - "value": "NA", - "count": 5 - } - ] - } - ], - "tests":[ - {"hash":143455619,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black OR blond OR NA","data":{"customDataFilters":[{"attributeId":"66ccf311955a443698dbcff0","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"}]},{"attributeId":"66ccf319955a443698dbcff1","values":[{"value":"black"},{"value":"blond"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf311955a443698dbcff0\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66ccf319955a443698dbcff1\",\"values\":[{\"value\":\"black\"},{\"value\":\"blond\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":165703449,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black OR blond OR NA","data":{"customDataFilters":[{"attributeId":"66ccf311955a443698dbcff0","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"}]},{"attributeId":"66ccf319955a443698dbcff1","values":[{"value":"black"},{"value":"blond"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf311955a443698dbcff0\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66ccf319955a443698dbcff1\",\"values\":[{\"value\":\"black\"},{\"value\":\"blond\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":312717167,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black OR blond OR NA","data":{"customDataFilters":[{"attributeId":"66ccf311955a443698dbcff0","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"}]},{"attributeId":"66ccf319955a443698dbcff1","values":[{"value":"black"},{"value":"blond"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf311955a443698dbcff0\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66ccf319955a443698dbcff1\",\"values\":[{\"value\":\"black\"},{\"value\":\"blond\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":738888681,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black OR blond OR NA","data":{"customDataFilters":[{"attributeId":"66ccf311955a443698dbcff0","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"}]},{"attributeId":"66ccf319955a443698dbcff1","values":[{"value":"black"},{"value":"blond"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf311955a443698dbcff0\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66ccf319955a443698dbcff1\",\"values\":[{\"value\":\"black\"},{\"value\":\"blond\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1281047624,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black OR blond OR NA","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"SUBTYPE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccf311955a443698dbcff0","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"}]},{"attributeId":"66ccf319955a443698dbcff1","values":[{"value":"black"},{"value":"blond"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf311955a443698dbcff0\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66ccf319955a443698dbcff1\",\"values\":[{\"value\":\"black\"},{\"value\":\"blond\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1313590561,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black OR blond OR NA","data":{"customDataFilters":[{"attributeId":"66ccf311955a443698dbcff0","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"}]},{"attributeId":"66ccf319955a443698dbcff1","values":[{"value":"black"},{"value":"blond"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf311955a443698dbcff0\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66ccf319955a443698dbcff1\",\"values\":[{\"value\":\"black\"},{\"value\":\"blond\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1158878867,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black OR blond OR NA","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"customDataFilters":[{"attributeId":"66ccf311955a443698dbcff0","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"}]},{"attributeId":"66ccf319955a443698dbcff1","values":[{"value":"black"},{"value":"blond"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf311955a443698dbcff0\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66ccf319955a443698dbcff1\",\"values\":[{\"value\":\"black\"},{\"value\":\"blond\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-340914622,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black OR blond OR NA","data":{"customDataFilters":[{"attributeId":"66ccf311955a443698dbcff0","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"}]},{"attributeId":"66ccf319955a443698dbcff1","values":[{"value":"black"},{"value":"blond"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf311955a443698dbcff0\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66ccf319955a443698dbcff1\",\"values\":[{\"value\":\"black\"},{\"value\":\"blond\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-255469361,"filterString":"Custom Data 1:brown OR blueCustom Data 2:black OR blond OR NA","data":{"customDataFilters":[{"attributeId":"66ccf311955a443698dbcff0","values":[{"value":"brown"},{"value":"blue"}],"datatype":"STRING","displayName":"Custom Data 1","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4938-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4941-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"blue"},{"sampleId":"TCGA-CS-4942-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"},{"sampleId":"TCGA-CS-4943-01","studyId":"lgg_tcga_pan_can_atlas_2018","value":"brown"}]},{"attributeId":"66ccf319955a443698dbcff1","values":[{"value":"black"},{"value":"blond"},{"value":"NA"}],"datatype":"STRING","displayName":"Custom Data 2","samples":[{"sampleId":"TCGA-3L-AA1B-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-4N-A93T-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-4T-AA8H-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT4-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AAT5-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"},{"sampleId":"TCGA-5M-AAT6-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"black"},{"sampleId":"TCGA-5M-AATA-01","studyId":"coadread_tcga_pan_can_atlas_2018","value":"blond"}]}],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"customDataFilters\":[{\"attributeId\":\"66ccf311955a443698dbcff0\",\"values\":[{\"value\":\"brown\"},{\"value\":\"blue\"}]},{\"attributeId\":\"66ccf319955a443698dbcff1\",\"values\":[{\"value\":\"black\"},{\"value\":\"blond\"},{\"value\":\"NA\"}]}],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - } - -] \ No newline at end of file diff --git a/apiTests/specs/generic-assay-data-bin-counts.json b/apiTests/specs/generic-assay-data-bin-counts.json deleted file mode 100644 index a9db3339bb1..00000000000 --- a/apiTests/specs/generic-assay-data-bin-counts.json +++ /dev/null @@ -1,126 +0,0 @@ -[ - { - "name":"two_tcga_one_numerical_generic_assay_chart_no_filter", - "note":"two tcga studies without any filters, this can be used to verify the endpoint itself, e.g. NA counts validation", - "studies":["blca_tcga_pan_can_atlas_2018", "coadread_tcga_pan_can_atlas_2018"], - "filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterString": "", - "tests":[ - {"hash":384235647,"filterString":"","data":{"genericAssayDataBinFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","disableLogScale":false}],"studyViewFilter":{"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/generic-assay-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"GenericAssayDataBinCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - { - "name":"two_tcga_one_numerical_generic_assay_chart_filter_higher_end", - "note":"two tcga studies with one numerical generic assay data chart filter from middle to higher end", - "studies":["blca_tcga_pan_can_atlas_2018", "coadread_tcga_pan_can_atlas_2018"], - "filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75},{\"start\":0.75,\"end\":0.8},{\"start\":0.8,\"end\":0.85},{\"start\":0.85,\"end\":0.9},{\"start\":0.9}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):> 0.65", - "tests":[ - {"hash":518256268,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):> 0.65","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.65,"end":0.7},{"start":0.7,"end":0.75},{"start":0.75,"end":0.8},{"start":0.8,"end":0.85},{"start":0.85,"end":0.9},{"start":0.9}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75},{\"start\":0.75,\"end\":0.8},{\"start\":0.8,\"end\":0.85},{\"start\":0.85,\"end\":0.9},{\"start\":0.9}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":544912293,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):> 0.65","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.65,"end":0.7},{"start":0.7,"end":0.75},{"start":0.75,"end":0.8},{"start":0.8,"end":0.85},{"start":0.85,"end":0.9},{"start":0.9}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75},{\"start\":0.75,\"end\":0.8},{\"start\":0.8,\"end\":0.85},{\"start\":0.85,\"end\":0.9},{\"start\":0.9}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1813843242,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):> 0.65","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.65,"end":0.7},{"start":0.7,"end":0.75},{"start":0.75,"end":0.8},{"start":0.8,"end":0.85},{"start":0.85,"end":0.9},{"start":0.9}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75},{\"start\":0.75,\"end\":0.8},{\"start\":0.8,\"end\":0.85},{\"start\":0.85,\"end\":0.9},{\"start\":0.9}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":2142367180,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):> 0.65","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.65,"end":0.7},{"start":0.7,"end":0.75},{"start":0.75,"end":0.8},{"start":0.8,"end":0.85},{"start":0.85,"end":0.9},{"start":0.9}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75},{\"start\":0.75,\"end\":0.8},{\"start\":0.8,\"end\":0.85},{\"start\":0.85,\"end\":0.9},{\"start\":0.9}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1196124544,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):> 0.65","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.65,"end":0.7},{"start":0.7,"end":0.75},{"start":0.75,"end":0.8},{"start":0.8,"end":0.85},{"start":0.85,"end":0.9},{"start":0.9}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75},{\"start\":0.75,\"end\":0.8},{\"start\":0.8,\"end\":0.85},{\"start\":0.85,\"end\":0.9},{\"start\":0.9}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1038360983,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):> 0.65","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"RACE"},{"attributeId":"SEX"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"ETHNICITY"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.65,"end":0.7},{"start":0.7,"end":0.75},{"start":0.75,"end":0.8},{"start":0.8,"end":0.85},{"start":0.85,"end":0.9},{"start":0.9}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75},{\"start\":0.75,\"end\":0.8},{\"start\":0.8,\"end\":0.85},{\"start\":0.85,\"end\":0.9},{\"start\":0.9}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1640929326,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):> 0.65","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.65,"end":0.7},{"start":0.7,"end":0.75},{"start":0.75,"end":0.8},{"start":0.8,"end":0.85},{"start":0.85,"end":0.9},{"start":0.9}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75},{\"start\":0.75,\"end\":0.8},{\"start\":0.8,\"end\":0.85},{\"start\":0.85,\"end\":0.9},{\"start\":0.9}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-739871817,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):> 0.65","data":{"genericAssayDataBinFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","disableLogScale":false}],"studyViewFilter":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.65,"end":0.7},{"start":0.7,"end":0.75},{"start":0.75,"end":0.8},{"start":0.8,"end":0.85},{"start":0.85,"end":0.9},{"start":0.9}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/generic-assay-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"GenericAssayDataBinCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75},{\"start\":0.75,\"end\":0.8},{\"start\":0.8,\"end\":0.85},{\"start\":0.85,\"end\":0.9},{\"start\":0.9}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-6047940,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):> 0.65","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.65,"end":0.7},{"start":0.7,"end":0.75},{"start":0.75,"end":0.8},{"start":0.8,"end":0.85},{"start":0.85,"end":0.9},{"start":0.9}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75},{\"start\":0.75,\"end\":0.8},{\"start\":0.8,\"end\":0.85},{\"start\":0.85,\"end\":0.9},{\"start\":0.9}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1763270972,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):> 0.65","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.65,"end":0.7},{"start":0.7,"end":0.75},{"start":0.75,"end":0.8},{"start":0.8,"end":0.85},{"start":0.85,"end":0.9},{"start":0.9}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75},{\"start\":0.75,\"end\":0.8},{\"start\":0.8,\"end\":0.85},{\"start\":0.85,\"end\":0.9},{\"start\":0.9}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - { - "name":"two_tcga_one_numerical_generic_assay_chart_filter_lower_end", - "note":"two tcga studies with one numerical generic assay data chart filter from middle to lower end", - "studies":["blca_tcga_pan_can_atlas_2018", "coadread_tcga_pan_can_atlas_2018"], - "filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"end\":0.25},{\"start\":0.25,\"end\":0.3},{\"start\":0.3,\"end\":0.35},{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):≤ 0.45", - "tests":[ - {"hash":19097513,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):≤ 0.45","data":{"genericAssayDataBinFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","disableLogScale":false}],"studyViewFilter":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"end":0.25},{"start":0.25,"end":0.3},{"start":0.3,"end":0.35},{"start":0.35,"end":0.4},{"start":0.4,"end":0.45}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/generic-assay-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"GenericAssayDataBinCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"end\":0.25},{\"start\":0.25,\"end\":0.3},{\"start\":0.3,\"end\":0.35},{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":33672580,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):≤ 0.45","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"end":0.25},{"start":0.25,"end":0.3},{"start":0.3,"end":0.35},{"start":0.35,"end":0.4},{"start":0.4,"end":0.45}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"end\":0.25},{\"start\":0.25,\"end\":0.3},{\"start\":0.3,\"end\":0.35},{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-359049970,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):≤ 0.45","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"end":0.25},{"start":0.25,"end":0.3},{"start":0.3,"end":0.35},{"start":0.35,"end":0.4},{"start":0.4,"end":0.45}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"end\":0.25},{\"start\":0.25,\"end\":0.3},{\"start\":0.3,\"end\":0.35},{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-77983304,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):≤ 0.45","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"end":0.25},{"start":0.25,"end":0.3},{"start":0.3,"end":0.35},{"start":0.35,"end":0.4},{"start":0.4,"end":0.45}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"end\":0.25},{\"start\":0.25,\"end\":0.3},{\"start\":0.3,\"end\":0.35},{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-171346021,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):≤ 0.45","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"RACE"},{"attributeId":"SEX"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"ETHNICITY"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"end":0.25},{"start":0.25,"end":0.3},{"start":0.3,"end":0.35},{"start":0.35,"end":0.4},{"start":0.4,"end":0.45}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"end\":0.25},{\"start\":0.25,\"end\":0.3},{\"start\":0.3,\"end\":0.35},{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-877967529,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):≤ 0.45","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"end":0.25},{"start":0.25,"end":0.3},{"start":0.3,"end":0.35},{"start":0.35,"end":0.4},{"start":0.4,"end":0.45}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"end\":0.25},{\"start\":0.25,\"end\":0.3},{\"start\":0.3,\"end\":0.35},{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1707804262,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):≤ 0.45","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"end":0.25},{"start":0.25,"end":0.3},{"start":0.3,"end":0.35},{"start":0.35,"end":0.4},{"start":0.4,"end":0.45}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"end\":0.25},{\"start\":0.25,\"end\":0.3},{\"start\":0.3,\"end\":0.35},{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-63687826,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):≤ 0.45","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"end":0.25},{"start":0.25,"end":0.3},{"start":0.3,"end":0.35},{"start":0.35,"end":0.4},{"start":0.4,"end":0.45}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"end\":0.25},{\"start\":0.25,\"end\":0.3},{\"start\":0.3,\"end\":0.35},{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-697236490,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):≤ 0.45","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"end":0.25},{"start":0.25,"end":0.3},{"start":0.3,"end":0.35},{"start":0.35,"end":0.4},{"start":0.4,"end":0.45}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"end\":0.25},{\"start\":0.25,\"end\":0.3},{\"start\":0.3,\"end\":0.35},{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1444086658,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge):≤ 0.45","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"end":0.25},{"start":0.25,"end":0.3},{"start":0.3,"end":0.35},{"start":0.35,"end":0.4},{"start":0.4,"end":0.45}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"end\":0.25},{\"start\":0.25,\"end\":0.3},{\"start\":0.3,\"end\":0.35},{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - { - "name":"two_tcga_one_numerical_generic_assay_chart_filter_in_middle", - "note":"two tcga studies with one numerical generic assay data chart filter in the middle", - "studies":["blca_tcga_pan_can_atlas_2018", "coadread_tcga_pan_can_atlas_2018"], - "filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75", - "tests":[ - {"hash":40003668,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":966795425,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"RACE"},{"attributeId":"SEX"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"ETHNICITY"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1308637388,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1584071516,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1212290320,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1344755530,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1695551179,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-587763972,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1471859358,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1714083403,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75","data":{"genericAssayDataBinFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","disableLogScale":false}],"studyViewFilter":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/generic-assay-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"GenericAssayDataBinCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - { - "name":"two_tcga_two_numerical_generic_assay_chart_filters", - "note":"two tcga studies with two numerical generic assay data chart filters", - "studies":["blca_tcga_pan_can_atlas_2018", "coadread_tcga_pan_can_atlas_2018"], - "filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]},{\"stableId\":\"AFR\",\"profileType\":\"genetic_ancestry\",\"values\":[{\"start\":0.02,\"end\":0.025},{\"start\":0.025,\"end\":0.03},{\"start\":0.03,\"end\":0.035},{\"start\":0.035,\"end\":0.04},{\"start\":0.04,\"end\":0.045},{\"start\":0.045,\"end\":0.05},{\"start\":0.05,\"end\":0.055},{\"start\":0.055,\"end\":0.06},{\"start\":0.06,\"end\":0.065},{\"start\":0.065,\"end\":0.07}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75AFR: Genetic Ancestry: < x ≤ 0.020.07", - "tests":[ - {"hash":392475908,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75AFR: Genetic Ancestry: < x ≤ 0.020.07","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]},{"stableId":"AFR","profileType":"genetic_ancestry","values":[{"start":0.02,"end":0.025},{"start":0.025,"end":0.03},{"start":0.03,"end":0.035},{"start":0.035,"end":0.04},{"start":0.04,"end":0.045},{"start":0.045,"end":0.05},{"start":0.05,"end":0.055},{"start":0.055,"end":0.06},{"start":0.06,"end":0.065},{"start":0.065,"end":0.07}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]},{\"stableId\":\"AFR\",\"profileType\":\"genetic_ancestry\",\"values\":[{\"start\":0.02,\"end\":0.025},{\"start\":0.025,\"end\":0.03},{\"start\":0.03,\"end\":0.035},{\"start\":0.035,\"end\":0.04},{\"start\":0.04,\"end\":0.045},{\"start\":0.045,\"end\":0.05},{\"start\":0.05,\"end\":0.055},{\"start\":0.055,\"end\":0.06},{\"start\":0.06,\"end\":0.065},{\"start\":0.065,\"end\":0.07}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":497155497,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75AFR: Genetic Ancestry: < x ≤ 0.020.07","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"RACE"},{"attributeId":"SEX"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"ETHNICITY"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]},{"stableId":"AFR","profileType":"genetic_ancestry","values":[{"start":0.02,"end":0.025},{"start":0.025,"end":0.03},{"start":0.03,"end":0.035},{"start":0.035,"end":0.04},{"start":0.04,"end":0.045},{"start":0.045,"end":0.05},{"start":0.05,"end":0.055},{"start":0.055,"end":0.06},{"start":0.06,"end":0.065},{"start":0.065,"end":0.07}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]},{\"stableId\":\"AFR\",\"profileType\":\"genetic_ancestry\",\"values\":[{\"start\":0.02,\"end\":0.025},{\"start\":0.025,\"end\":0.03},{\"start\":0.03,\"end\":0.035},{\"start\":0.035,\"end\":0.04},{\"start\":0.04,\"end\":0.045},{\"start\":0.045,\"end\":0.05},{\"start\":0.05,\"end\":0.055},{\"start\":0.055,\"end\":0.06},{\"start\":0.06,\"end\":0.065},{\"start\":0.065,\"end\":0.07}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":578993847,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75AFR: Genetic Ancestry: < x ≤ 0.020.07","data":{"genericAssayDataBinFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","disableLogScale":false}],"studyViewFilter":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]},{"stableId":"AFR","profileType":"genetic_ancestry","values":[{"start":0.02,"end":0.025},{"start":0.025,"end":0.03},{"start":0.03,"end":0.035},{"start":0.035,"end":0.04},{"start":0.04,"end":0.045},{"start":0.045,"end":0.05},{"start":0.05,"end":0.055},{"start":0.055,"end":0.06},{"start":0.06,"end":0.065},{"start":0.065,"end":0.07}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/generic-assay-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"GenericAssayDataBinCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]},{\"stableId\":\"AFR\",\"profileType\":\"genetic_ancestry\",\"values\":[{\"start\":0.02,\"end\":0.025},{\"start\":0.025,\"end\":0.03},{\"start\":0.03,\"end\":0.035},{\"start\":0.035,\"end\":0.04},{\"start\":0.04,\"end\":0.045},{\"start\":0.045,\"end\":0.05},{\"start\":0.05,\"end\":0.055},{\"start\":0.055,\"end\":0.06},{\"start\":0.06,\"end\":0.065},{\"start\":0.065,\"end\":0.07}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1252830588,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75AFR: Genetic Ancestry: < x ≤ 0.020.07","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]},{"stableId":"AFR","profileType":"genetic_ancestry","values":[{"start":0.02,"end":0.025},{"start":0.025,"end":0.03},{"start":0.03,"end":0.035},{"start":0.035,"end":0.04},{"start":0.04,"end":0.045},{"start":0.045,"end":0.05},{"start":0.05,"end":0.055},{"start":0.055,"end":0.06},{"start":0.06,"end":0.065},{"start":0.065,"end":0.07}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]},{\"stableId\":\"AFR\",\"profileType\":\"genetic_ancestry\",\"values\":[{\"start\":0.02,\"end\":0.025},{\"start\":0.025,\"end\":0.03},{\"start\":0.03,\"end\":0.035},{\"start\":0.035,\"end\":0.04},{\"start\":0.04,\"end\":0.045},{\"start\":0.045,\"end\":0.05},{\"start\":0.05,\"end\":0.055},{\"start\":0.055,\"end\":0.06},{\"start\":0.06,\"end\":0.065},{\"start\":0.065,\"end\":0.07}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1600325568,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75AFR: Genetic Ancestry: < x ≤ 0.020.07","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]},{"stableId":"AFR","profileType":"genetic_ancestry","values":[{"start":0.02,"end":0.025},{"start":0.025,"end":0.03},{"start":0.03,"end":0.035},{"start":0.035,"end":0.04},{"start":0.04,"end":0.045},{"start":0.045,"end":0.05},{"start":0.05,"end":0.055},{"start":0.055,"end":0.06},{"start":0.06,"end":0.065},{"start":0.065,"end":0.07}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]},{\"stableId\":\"AFR\",\"profileType\":\"genetic_ancestry\",\"values\":[{\"start\":0.02,\"end\":0.025},{\"start\":0.025,\"end\":0.03},{\"start\":0.03,\"end\":0.035},{\"start\":0.035,\"end\":0.04},{\"start\":0.04,\"end\":0.045},{\"start\":0.045,\"end\":0.05},{\"start\":0.05,\"end\":0.055},{\"start\":0.055,\"end\":0.06},{\"start\":0.06,\"end\":0.065},{\"start\":0.065,\"end\":0.07}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1066250134,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75AFR: Genetic Ancestry: < x ≤ 0.020.07","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]},{"stableId":"AFR","profileType":"genetic_ancestry","values":[{"start":0.02,"end":0.025},{"start":0.025,"end":0.03},{"start":0.03,"end":0.035},{"start":0.035,"end":0.04},{"start":0.04,"end":0.045},{"start":0.045,"end":0.05},{"start":0.05,"end":0.055},{"start":0.055,"end":0.06},{"start":0.06,"end":0.065},{"start":0.065,"end":0.07}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]},{\"stableId\":\"AFR\",\"profileType\":\"genetic_ancestry\",\"values\":[{\"start\":0.02,\"end\":0.025},{\"start\":0.025,\"end\":0.03},{\"start\":0.03,\"end\":0.035},{\"start\":0.035,\"end\":0.04},{\"start\":0.04,\"end\":0.045},{\"start\":0.045,\"end\":0.05},{\"start\":0.05,\"end\":0.055},{\"start\":0.055,\"end\":0.06},{\"start\":0.06,\"end\":0.065},{\"start\":0.065,\"end\":0.07}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-569730587,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75AFR: Genetic Ancestry: < x ≤ 0.020.07","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]},{"stableId":"AFR","profileType":"genetic_ancestry","values":[{"start":0.02,"end":0.025},{"start":0.025,"end":0.03},{"start":0.03,"end":0.035},{"start":0.035,"end":0.04},{"start":0.04,"end":0.045},{"start":0.045,"end":0.05},{"start":0.05,"end":0.055},{"start":0.055,"end":0.06},{"start":0.06,"end":0.065},{"start":0.065,"end":0.07}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]},{\"stableId\":\"AFR\",\"profileType\":\"genetic_ancestry\",\"values\":[{\"start\":0.02,\"end\":0.025},{\"start\":0.025,\"end\":0.03},{\"start\":0.03,\"end\":0.035},{\"start\":0.035,\"end\":0.04},{\"start\":0.04,\"end\":0.045},{\"start\":0.045,\"end\":0.05},{\"start\":0.05,\"end\":0.055},{\"start\":0.055,\"end\":0.06},{\"start\":0.06,\"end\":0.065},{\"start\":0.065,\"end\":0.07}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1661933492,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75AFR: Genetic Ancestry: < x ≤ 0.020.07","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]},{"stableId":"AFR","profileType":"genetic_ancestry","values":[{"start":0.02,"end":0.025},{"start":0.025,"end":0.03},{"start":0.03,"end":0.035},{"start":0.035,"end":0.04},{"start":0.04,"end":0.045},{"start":0.045,"end":0.05},{"start":0.05,"end":0.055},{"start":0.055,"end":0.06},{"start":0.06,"end":0.065},{"start":0.065,"end":0.07}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]},{\"stableId\":\"AFR\",\"profileType\":\"genetic_ancestry\",\"values\":[{\"start\":0.02,\"end\":0.025},{\"start\":0.025,\"end\":0.03},{\"start\":0.03,\"end\":0.035},{\"start\":0.035,\"end\":0.04},{\"start\":0.04,\"end\":0.045},{\"start\":0.045,\"end\":0.05},{\"start\":0.05,\"end\":0.055},{\"start\":0.055,\"end\":0.06},{\"start\":0.06,\"end\":0.065},{\"start\":0.065,\"end\":0.07}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1137996270,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75AFR: Genetic Ancestry: < x ≤ 0.020.07","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]},{"stableId":"AFR","profileType":"genetic_ancestry","values":[{"start":0.02,"end":0.025},{"start":0.025,"end":0.03},{"start":0.03,"end":0.035},{"start":0.035,"end":0.04},{"start":0.04,"end":0.045},{"start":0.045,"end":0.05},{"start":0.05,"end":0.055},{"start":0.055,"end":0.06},{"start":0.06,"end":0.065},{"start":0.065,"end":0.07}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]},{\"stableId\":\"AFR\",\"profileType\":\"genetic_ancestry\",\"values\":[{\"start\":0.02,\"end\":0.025},{\"start\":0.025,\"end\":0.03},{\"start\":0.03,\"end\":0.035},{\"start\":0.035,\"end\":0.04},{\"start\":0.04,\"end\":0.045},{\"start\":0.045,\"end\":0.05},{\"start\":0.05,\"end\":0.055},{\"start\":0.055,\"end\":0.06},{\"start\":0.06,\"end\":0.065},{\"start\":0.065,\"end\":0.07}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1948966133,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75AFR: Genetic Ancestry: < x ≤ 0.020.07","data":{"genericAssayDataBinFilters":[{"stableId":"AFR","profileType":"genetic_ancestry","disableLogScale":false}],"studyViewFilter":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]},{"stableId":"AFR","profileType":"genetic_ancestry","values":[{"start":0.02,"end":0.025},{"start":0.025,"end":0.03},{"start":0.03,"end":0.035},{"start":0.035,"end":0.04},{"start":0.04,"end":0.045},{"start":0.045,"end":0.05},{"start":0.05,"end":0.055},{"start":0.055,"end":0.06},{"start":0.06,"end":0.065},{"start":0.065,"end":0.07}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/generic-assay-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"GenericAssayDataBinCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]},{\"stableId\":\"AFR\",\"profileType\":\"genetic_ancestry\",\"values\":[{\"start\":0.02,\"end\":0.025},{\"start\":0.025,\"end\":0.03},{\"start\":0.03,\"end\":0.035},{\"start\":0.035,\"end\":0.04},{\"start\":0.04,\"end\":0.045},{\"start\":0.045,\"end\":0.05},{\"start\":0.05,\"end\":0.055},{\"start\":0.055,\"end\":0.06},{\"start\":0.06,\"end\":0.065},{\"start\":0.065,\"end\":0.07}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-617008116,"filterString":"ATP2A1 (cg00000292): Methylation (HM27 and HM450 merge): < x ≤ 0.350.75AFR: Genetic Ancestry: < x ≤ 0.020.07","data":{"genericAssayDataFilters":[{"stableId":"cg00000292","profileType":"methylation_hm27_hm450_merge","values":[{"start":0.35,"end":0.4},{"start":0.4,"end":0.45},{"start":0.45,"end":0.5},{"start":0.5,"end":0.55},{"start":0.55,"end":0.6},{"start":0.6,"end":0.65},{"start":0.65,"end":0.7},{"start":0.7,"end":0.75}]},{"stableId":"AFR","profileType":"genetic_ancestry","values":[{"start":0.02,"end":0.025},{"start":0.025,"end":0.03},{"start":0.03,"end":0.035},{"start":0.035,"end":0.04},{"start":0.04,"end":0.045},{"start":0.045,"end":0.05},{"start":0.05,"end":0.055},{"start":0.055,"end":0.06},{"start":0.06,"end":0.065},{"start":0.065,"end":0.07}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genericAssayDataFilters\":[{\"stableId\":\"cg00000292\",\"profileType\":\"methylation_hm27_hm450_merge\",\"values\":[{\"start\":0.35,\"end\":0.4},{\"start\":0.4,\"end\":0.45},{\"start\":0.45,\"end\":0.5},{\"start\":0.5,\"end\":0.55},{\"start\":0.55,\"end\":0.6},{\"start\":0.6,\"end\":0.65},{\"start\":0.65,\"end\":0.7},{\"start\":0.7,\"end\":0.75}]},{\"stableId\":\"AFR\",\"profileType\":\"genetic_ancestry\",\"values\":[{\"start\":0.02,\"end\":0.025},{\"start\":0.025,\"end\":0.03},{\"start\":0.03,\"end\":0.035},{\"start\":0.035,\"end\":0.04},{\"start\":0.04,\"end\":0.045},{\"start\":0.045,\"end\":0.05},{\"start\":0.05,\"end\":0.055},{\"start\":0.055,\"end\":0.06},{\"start\":0.06,\"end\":0.065},{\"start\":0.065,\"end\":0.07}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - } -] \ No newline at end of file diff --git a/apiTests/specs/genie-public.json b/apiTests/specs/genie-public.json deleted file mode 100644 index bde93511d5e..00000000000 --- a/apiTests/specs/genie-public.json +++ /dev/null @@ -1,10 +0,0 @@ -[ - { - "name":"", - "note":"", - "studies":[], - "tests":[ - {"hash":788956100,"filterString":"","data":{"attributes":[{"attributeId":"CANCER_TYPE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"SAMPLE_COUNT"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"SAMPLE_TYPE"},{"attributeId":"CENTER"},{"attributeId":"ONCOTREE_CODE"},{"attributeId":"PRIMARY_RACE"},{"attributeId":"SAMPLE_TYPE_DETAILED"},{"attributeId":"SEQ_ASSAY_ID"},{"attributeId":"DEAD"}],"studyViewFilter":{"studyIds":["genie_public"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["genie_public"],"filterUrl":"/study/summary?id=genie_public#filterJson={\"studyIds\":[\"genie_public\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - } -] \ No newline at end of file diff --git a/apiTests/specs/genomic-data-bin-counts.json b/apiTests/specs/genomic-data-bin-counts.json deleted file mode 100644 index c5d78d838bb..00000000000 --- a/apiTests/specs/genomic-data-bin-counts.json +++ /dev/null @@ -1,150 +0,0 @@ -[ - { - "name":"two_tcga_one_numerical_genomic_chart_no_filter", - "note":"two tcga studies without any filters, this can be used to verify the endpoint itself, e.g. NA counts validation", - "studies":["blca_tcga_pan_can_atlas_2018", "coadread_tcga_pan_can_atlas_2018"], - "filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterString": "", - "tests":[ - {"hash":-1058303076,"filterString":"","data":{"genomicDataBinFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna_median_Zscores","disableLogScale":false}],"studyViewFilter":{"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/genomic-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"GenomicDataBinCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - { - "name":"two_tcga_one_numerical_genomic_chart_filter_higher_end", - "note":"two tcga studies with one numerical genomic data chart filter from middle to higher end", - "studies":["blca_tcga_pan_can_atlas_2018", "coadread_tcga_pan_can_atlas_2018"], - "filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":1000,\"end\":3162},{\"start\":3162,\"end\":10000}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 100010000", - "tests":[ - {"hash":517957775,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 100010000","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":1000,"end":3162},{"start":3162,"end":10000}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":1000,\"end\":3162},{\"start\":3162,\"end\":10000}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1084072374,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 100010000","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":1000,"end":3162},{"start":3162,"end":10000}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":1000,\"end\":3162},{\"start\":3162,\"end\":10000}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1879535509,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 100010000","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":1000,"end":3162},{"start":3162,"end":10000}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":1000,\"end\":3162},{\"start\":3162,\"end\":10000}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1994780762,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 100010000","data":{"genomicDataBinFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","disableLogScale":false}],"studyViewFilter":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":1000,"end":3162},{"start":3162,"end":10000}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/genomic-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"GenomicDataBinCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":1000,\"end\":3162},{\"start\":3162,\"end\":10000}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1852594951,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 100010000","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":1000,"end":3162},{"start":3162,"end":10000}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":1000,\"end\":3162},{\"start\":3162,\"end\":10000}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-826852934,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 100010000","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"RACE"},{"attributeId":"SEX"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"ETHNICITY"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":1000,"end":3162},{"start":3162,"end":10000}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":1000,\"end\":3162},{\"start\":3162,\"end\":10000}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-684418853,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 100010000","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":1000,"end":3162},{"start":3162,"end":10000}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":1000,\"end\":3162},{\"start\":3162,\"end\":10000}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1580730653,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 100010000","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":1000,"end":3162},{"start":3162,"end":10000}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":1000,\"end\":3162},{\"start\":3162,\"end\":10000}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-950159475,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 100010000","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":1000,"end":3162},{"start":3162,"end":10000}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":1000,\"end\":3162},{\"start\":3162,\"end\":10000}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-792416931,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 100010000","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":1000,"end":3162},{"start":3162,"end":10000}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":1000,\"end\":3162},{\"start\":3162,\"end\":10000}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - { - "name":"two_tcga_one_numerical_genomic_chart_filter_lower_end", - "note":"two tcga studies with one numerical genomic data chart filter from middle to lower end", - "studies":["blca_tcga_pan_can_atlas_2018", "coadread_tcga_pan_can_atlas_2018"], - "filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":31,\"end\":100},{\"start\":100,\"end\":316}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 31316", - "tests":[ - {"hash":950614605,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 31316","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":31,"end":100},{"start":100,"end":316}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":31,\"end\":100},{\"start\":100,\"end\":316}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1629744591,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 31316","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":31,"end":100},{"start":100,"end":316}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":31,\"end\":100},{\"start\":100,\"end\":316}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1929531989,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 31316","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":31,"end":100},{"start":100,"end":316}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":31,\"end\":100},{\"start\":100,\"end\":316}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1955799069,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 31316","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":31,"end":100},{"start":100,"end":316}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":31,\"end\":100},{\"start\":100,\"end\":316}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1990053959,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 31316","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":31,"end":100},{"start":100,"end":316}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":31,\"end\":100},{\"start\":100,\"end\":316}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-2099315334,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 31316","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"RACE"},{"attributeId":"SEX"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"ETHNICITY"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":31,"end":100},{"start":100,"end":316}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":31,\"end\":100},{\"start\":100,\"end\":316}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-627706762,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 31316","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":31,"end":100},{"start":100,"end":316}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":31,\"end\":100},{\"start\":100,\"end\":316}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-2054238693,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 31316","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":31,"end":100},{"start":100,"end":316}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":31,\"end\":100},{\"start\":100,\"end\":316}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-6354525,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 31316","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":31,"end":100},{"start":100,"end":316}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":31,\"end\":100},{\"start\":100,\"end\":316}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1537996902,"filterString":"TP53: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2): < x ≤ 31316","data":{"genomicDataBinFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","disableLogScale":false}],"studyViewFilter":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna","values":[{"start":31,"end":100},{"start":100,"end":316}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/genomic-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"GenomicDataBinCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna\",\"values\":[{\"start\":31,\"end\":100},{\"start\":100,\"end\":316}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - { - "name":"two_tcga_one_numerical_genomic_chart_filter_only_negative_values_selected", - "note":"two tcga studies with one numerical genomic data chart filter contains only negative values", - "studies":["blca_tcga_pan_can_atlas_2018", "coadread_tcga_pan_can_atlas_2018"], - "filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-2.5,\"end\":-2.25},{\"start\":-2.25,\"end\":-2},{\"start\":-2,\"end\":-1.75},{\"start\":-1.75,\"end\":-1.5},{\"start\":-1.5,\"end\":-1.25}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText":"TP53: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -2.5-1.25", - "tests":[ - {"hash":710206650,"filterString":"TP53: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -2.5-1.25","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-2.5,"end":-2.25},{"start":-2.25,"end":-2},{"start":-2,"end":-1.75},{"start":-1.75,"end":-1.5},{"start":-1.5,"end":-1.25}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-2.5,\"end\":-2.25},{\"start\":-2.25,\"end\":-2},{\"start\":-2,\"end\":-1.75},{\"start\":-1.75,\"end\":-1.5},{\"start\":-1.5,\"end\":-1.25}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1118484004,"filterString":"TP53: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -2.5-1.25","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-2.5,"end":-2.25},{"start":-2.25,"end":-2},{"start":-2,"end":-1.75},{"start":-1.75,"end":-1.5},{"start":-1.5,"end":-1.25}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-2.5,\"end\":-2.25},{\"start\":-2.25,\"end\":-2},{\"start\":-2,\"end\":-1.75},{\"start\":-1.75,\"end\":-1.5},{\"start\":-1.5,\"end\":-1.25}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1168645812,"filterString":"TP53: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -2.5-1.25","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-2.5,"end":-2.25},{"start":-2.25,"end":-2},{"start":-2,"end":-1.75},{"start":-1.75,"end":-1.5},{"start":-1.5,"end":-1.25}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-2.5,\"end\":-2.25},{\"start\":-2.25,\"end\":-2},{\"start\":-2,\"end\":-1.75},{\"start\":-1.75,\"end\":-1.5},{\"start\":-1.5,\"end\":-1.25}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1567017101,"filterString":"TP53: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -2.5-1.25","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-2.5,"end":-2.25},{"start":-2.25,"end":-2},{"start":-2,"end":-1.75},{"start":-1.75,"end":-1.5},{"start":-1.5,"end":-1.25}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-2.5,\"end\":-2.25},{\"start\":-2.25,\"end\":-2},{\"start\":-2,\"end\":-1.75},{\"start\":-1.75,\"end\":-1.5},{\"start\":-1.5,\"end\":-1.25}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":2087302238,"filterString":"TP53: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -2.5-1.25","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-2.5,"end":-2.25},{"start":-2.25,"end":-2},{"start":-2,"end":-1.75},{"start":-1.75,"end":-1.5},{"start":-1.5,"end":-1.25}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-2.5,\"end\":-2.25},{\"start\":-2.25,\"end\":-2},{\"start\":-2,\"end\":-1.75},{\"start\":-1.75,\"end\":-1.5},{\"start\":-1.5,\"end\":-1.25}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1009889640,"filterString":"TP53: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -2.5-1.25","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-2.5,"end":-2.25},{"start":-2.25,"end":-2},{"start":-2,"end":-1.75},{"start":-1.75,"end":-1.5},{"start":-1.5,"end":-1.25}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-2.5,\"end\":-2.25},{\"start\":-2.25,\"end\":-2},{\"start\":-2,\"end\":-1.75},{\"start\":-1.75,\"end\":-1.5},{\"start\":-1.5,\"end\":-1.25}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1234322951,"filterString":"TP53: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -2.5-1.25","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"RACE"},{"attributeId":"SEX"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"ETHNICITY"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-2.5,"end":-2.25},{"start":-2.25,"end":-2},{"start":-2,"end":-1.75},{"start":-1.75,"end":-1.5},{"start":-1.5,"end":-1.25}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-2.5,\"end\":-2.25},{\"start\":-2.25,\"end\":-2},{\"start\":-2,\"end\":-1.75},{\"start\":-1.75,\"end\":-1.5},{\"start\":-1.5,\"end\":-1.25}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1113995100,"filterString":"TP53: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -2.5-1.25","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-2.5,"end":-2.25},{"start":-2.25,"end":-2},{"start":-2,"end":-1.75},{"start":-1.75,"end":-1.5},{"start":-1.5,"end":-1.25}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-2.5,\"end\":-2.25},{\"start\":-2.25,\"end\":-2},{\"start\":-2,\"end\":-1.75},{\"start\":-1.75,\"end\":-1.5},{\"start\":-1.5,\"end\":-1.25}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-2049879636,"filterString":"TP53: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -2.5-1.25","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-2.5,"end":-2.25},{"start":-2.25,"end":-2},{"start":-2,"end":-1.75},{"start":-1.75,"end":-1.5},{"start":-1.5,"end":-1.25}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-2.5,\"end\":-2.25},{\"start\":-2.25,\"end\":-2},{\"start\":-2,\"end\":-1.75},{\"start\":-1.75,\"end\":-1.5},{\"start\":-1.5,\"end\":-1.25}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - { - "name":"two_tcga_one_numerical_genomic_chart_filter_in_middle", - "note":"two tcga studies with one numerical genomic data chart filter in the middle", - "studies":["blca_tcga_pan_can_atlas_2018", "coadread_tcga_pan_can_atlas_2018"], - "filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa_Zscores\",\"values\":[{\"start\":-1.25,\"end\":-1},{\"start\":-1,\"end\":-0.75},{\"start\":-0.75,\"end\":-0.5},{\"start\":-0.5,\"end\":-0.25},{\"start\":-0.25,\"end\":0},{\"start\":0,\"end\":0.25},{\"start\":0.25,\"end\":0.5},{\"start\":0.5,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText":"TP53: Protein expression z-scores (RPPA): < x ≤ -1.250.75", - "tests":[ - {"hash":368283586,"filterString":"TP53: Protein expression z-scores (RPPA): < x ≤ -1.250.75","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rppa_Zscores","values":[{"start":-1.25,"end":-1},{"start":-1,"end":-0.75},{"start":-0.75,"end":-0.5},{"start":-0.5,"end":-0.25},{"start":-0.25,"end":0},{"start":0,"end":0.25},{"start":0.25,"end":0.5},{"start":0.5,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa_Zscores\",\"values\":[{\"start\":-1.25,\"end\":-1},{\"start\":-1,\"end\":-0.75},{\"start\":-0.75,\"end\":-0.5},{\"start\":-0.5,\"end\":-0.25},{\"start\":-0.25,\"end\":0},{\"start\":0,\"end\":0.25},{\"start\":0.25,\"end\":0.5},{\"start\":0.5,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":455445948,"filterString":"TP53: Protein expression z-scores (RPPA): < x ≤ -1.250.75","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rppa_Zscores","values":[{"start":-1.25,"end":-1},{"start":-1,"end":-0.75},{"start":-0.75,"end":-0.5},{"start":-0.5,"end":-0.25},{"start":-0.25,"end":0},{"start":0,"end":0.25},{"start":0.25,"end":0.5},{"start":0.5,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa_Zscores\",\"values\":[{\"start\":-1.25,\"end\":-1},{\"start\":-1,\"end\":-0.75},{\"start\":-0.75,\"end\":-0.5},{\"start\":-0.5,\"end\":-0.25},{\"start\":-0.25,\"end\":0},{\"start\":0,\"end\":0.25},{\"start\":0.25,\"end\":0.5},{\"start\":0.5,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":592309141,"filterString":"TP53: Protein expression z-scores (RPPA): < x ≤ -1.250.75","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rppa_Zscores","values":[{"start":-1.25,"end":-1},{"start":-1,"end":-0.75},{"start":-0.75,"end":-0.5},{"start":-0.5,"end":-0.25},{"start":-0.25,"end":0},{"start":0,"end":0.25},{"start":0.25,"end":0.5},{"start":0.5,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa_Zscores\",\"values\":[{\"start\":-1.25,\"end\":-1},{\"start\":-1,\"end\":-0.75},{\"start\":-0.75,\"end\":-0.5},{\"start\":-0.5,\"end\":-0.25},{\"start\":-0.25,\"end\":0},{\"start\":0,\"end\":0.25},{\"start\":0.25,\"end\":0.5},{\"start\":0.5,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1962607958,"filterString":"TP53: Protein expression z-scores (RPPA): < x ≤ -1.250.75","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rppa_Zscores","values":[{"start":-1.25,"end":-1},{"start":-1,"end":-0.75},{"start":-0.75,"end":-0.5},{"start":-0.5,"end":-0.25},{"start":-0.25,"end":0},{"start":0,"end":0.25},{"start":0.25,"end":0.5},{"start":0.5,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa_Zscores\",\"values\":[{\"start\":-1.25,\"end\":-1},{\"start\":-1,\"end\":-0.75},{\"start\":-0.75,\"end\":-0.5},{\"start\":-0.5,\"end\":-0.25},{\"start\":-0.25,\"end\":0},{\"start\":0,\"end\":0.25},{\"start\":0.25,\"end\":0.5},{\"start\":0.5,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1997503577,"filterString":"TP53: Protein expression z-scores (RPPA): < x ≤ -1.250.75","data":{"genomicDataBinFilters":[{"hugoGeneSymbol":"TP53","profileType":"rppa_Zscores","disableLogScale":false}],"studyViewFilter":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rppa_Zscores","values":[{"start":-1.25,"end":-1},{"start":-1,"end":-0.75},{"start":-0.75,"end":-0.5},{"start":-0.5,"end":-0.25},{"start":-0.25,"end":0},{"start":0,"end":0.25},{"start":0.25,"end":0.5},{"start":0.5,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/genomic-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"GenomicDataBinCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa_Zscores\",\"values\":[{\"start\":-1.25,\"end\":-1},{\"start\":-1,\"end\":-0.75},{\"start\":-0.75,\"end\":-0.5},{\"start\":-0.5,\"end\":-0.25},{\"start\":-0.25,\"end\":0},{\"start\":0,\"end\":0.25},{\"start\":0.25,\"end\":0.5},{\"start\":0.5,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1976140656,"filterString":"TP53: Protein expression z-scores (RPPA): < x ≤ -1.250.75","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rppa_Zscores","values":[{"start":-1.25,"end":-1},{"start":-1,"end":-0.75},{"start":-0.75,"end":-0.5},{"start":-0.5,"end":-0.25},{"start":-0.25,"end":0},{"start":0,"end":0.25},{"start":0.25,"end":0.5},{"start":0.5,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa_Zscores\",\"values\":[{\"start\":-1.25,\"end\":-1},{\"start\":-1,\"end\":-0.75},{\"start\":-0.75,\"end\":-0.5},{\"start\":-0.5,\"end\":-0.25},{\"start\":-0.25,\"end\":0},{\"start\":0,\"end\":0.25},{\"start\":0.25,\"end\":0.5},{\"start\":0.5,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1207606015,"filterString":"TP53: Protein expression z-scores (RPPA): < x ≤ -1.250.75","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"RACE"},{"attributeId":"SEX"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"ETHNICITY"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rppa_Zscores","values":[{"start":-1.25,"end":-1},{"start":-1,"end":-0.75},{"start":-0.75,"end":-0.5},{"start":-0.5,"end":-0.25},{"start":-0.25,"end":0},{"start":0,"end":0.25},{"start":0.25,"end":0.5},{"start":0.5,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa_Zscores\",\"values\":[{\"start\":-1.25,\"end\":-1},{\"start\":-1,\"end\":-0.75},{\"start\":-0.75,\"end\":-0.5},{\"start\":-0.5,\"end\":-0.25},{\"start\":-0.25,\"end\":0},{\"start\":0,\"end\":0.25},{\"start\":0.25,\"end\":0.5},{\"start\":0.5,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1254418276,"filterString":"TP53: Protein expression z-scores (RPPA): < x ≤ -1.250.75","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rppa_Zscores","values":[{"start":-1.25,"end":-1},{"start":-1,"end":-0.75},{"start":-0.75,"end":-0.5},{"start":-0.5,"end":-0.25},{"start":-0.25,"end":0},{"start":0,"end":0.25},{"start":0.25,"end":0.5},{"start":0.5,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa_Zscores\",\"values\":[{\"start\":-1.25,\"end\":-1},{\"start\":-1,\"end\":-0.75},{\"start\":-0.75,\"end\":-0.5},{\"start\":-0.5,\"end\":-0.25},{\"start\":-0.25,\"end\":0},{\"start\":0,\"end\":0.25},{\"start\":0.25,\"end\":0.5},{\"start\":0.5,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1568011476,"filterString":"TP53: Protein expression z-scores (RPPA): < x ≤ -1.250.75","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rppa_Zscores","values":[{"start":-1.25,"end":-1},{"start":-1,"end":-0.75},{"start":-0.75,"end":-0.5},{"start":-0.5,"end":-0.25},{"start":-0.25,"end":0},{"start":0,"end":0.25},{"start":0.25,"end":0.5},{"start":0.5,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa_Zscores\",\"values\":[{\"start\":-1.25,\"end\":-1},{\"start\":-1,\"end\":-0.75},{\"start\":-0.75,\"end\":-0.5},{\"start\":-0.5,\"end\":-0.25},{\"start\":-0.25,\"end\":0},{\"start\":0,\"end\":0.25},{\"start\":0.25,\"end\":0.5},{\"start\":0.5,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1904973132,"filterString":"TP53: Protein expression z-scores (RPPA): < x ≤ -1.250.75","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rppa_Zscores","values":[{"start":-1.25,"end":-1},{"start":-1,"end":-0.75},{"start":-0.75,"end":-0.5},{"start":-0.5,"end":-0.25},{"start":-0.25,"end":0},{"start":0,"end":0.25},{"start":0.25,"end":0.5},{"start":0.5,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa_Zscores\",\"values\":[{\"start\":-1.25,\"end\":-1},{\"start\":-1,\"end\":-0.75},{\"start\":-0.75,\"end\":-0.5},{\"start\":-0.5,\"end\":-0.25},{\"start\":-0.25,\"end\":0},{\"start\":0,\"end\":0.25},{\"start\":0.25,\"end\":0.5},{\"start\":0.5,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1944771519,"filterString":"TP53: Protein expression z-scores (RPPA): < x ≤ -1.250.75","data":{"genomicDataBinFilters":[{"hugoGeneSymbol":"EGFR","profileType":"rna_seq_v2_mrna","disableLogScale":false}],"studyViewFilter":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"rppa_Zscores","values":[{"start":-1.25,"end":-1},{"start":-1,"end":-0.75},{"start":-0.75,"end":-0.5},{"start":-0.5,"end":-0.25},{"start":-0.25,"end":0},{"start":0,"end":0.25},{"start":0.25,"end":0.5},{"start":0.5,"end":0.75}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/genomic-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"GenomicDataBinCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa_Zscores\",\"values\":[{\"start\":-1.25,\"end\":-1},{\"start\":-1,\"end\":-0.75},{\"start\":-0.75,\"end\":-0.5},{\"start\":-0.5,\"end\":-0.25},{\"start\":-0.25,\"end\":0},{\"start\":0,\"end\":0.25},{\"start\":0.25,\"end\":0.5},{\"start\":0.5,\"end\":0.75}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - { - "name":"two_tcga_two_numerical_genomic_chart_filters", - "note":"two tcga studies with two numerical genomic data chart filters", - "studies":["blca_tcga_pan_can_atlas_2018", "coadread_tcga_pan_can_atlas_2018"], - "filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-1,\"end\":-0.5},{\"start\":-0.5,\"end\":0},{\"start\":0,\"end\":0.5},{\"start\":0.5,\"end\":1},{\"start\":1,\"end\":1.5},{\"start\":1.5,\"end\":2}]},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa\",\"values\":[{\"start\":-2.2,\"end\":-2},{\"start\":-2,\"end\":-1.8},{\"start\":-1.8,\"end\":-1.6},{\"start\":-1.6,\"end\":-1.4},{\"start\":-1.4,\"end\":-1.2},{\"start\":-1.2,\"end\":-1},{\"start\":-1,\"end\":-0.8},{\"start\":-0.8,\"end\":-0.6},{\"start\":-0.6,\"end\":-0.4},{\"start\":-0.4,\"end\":-0.2}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText":"EGFR: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -12TP53: Protein expression (RPPA): < x ≤ -2.2-0.2", - "tests":[ - {"hash":388930409,"filterString":"EGFR: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -12TP53: Protein expression (RPPA): < x ≤ -2.2-0.2","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"genomicDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-1,"end":-0.5},{"start":-0.5,"end":0},{"start":0,"end":0.5},{"start":0.5,"end":1},{"start":1,"end":1.5},{"start":1.5,"end":2}]},{"hugoGeneSymbol":"TP53","profileType":"rppa","values":[{"start":-2.2,"end":-2},{"start":-2,"end":-1.8},{"start":-1.8,"end":-1.6},{"start":-1.6,"end":-1.4},{"start":-1.4,"end":-1.2},{"start":-1.2,"end":-1},{"start":-1,"end":-0.8},{"start":-0.8,"end":-0.6},{"start":-0.6,"end":-0.4},{"start":-0.4,"end":-0.2}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-1,\"end\":-0.5},{\"start\":-0.5,\"end\":0},{\"start\":0,\"end\":0.5},{\"start\":0.5,\"end\":1},{\"start\":1,\"end\":1.5},{\"start\":1.5,\"end\":2}]},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa\",\"values\":[{\"start\":-2.2,\"end\":-2},{\"start\":-2,\"end\":-1.8},{\"start\":-1.8,\"end\":-1.6},{\"start\":-1.6,\"end\":-1.4},{\"start\":-1.4,\"end\":-1.2},{\"start\":-1.2,\"end\":-1},{\"start\":-1,\"end\":-0.8},{\"start\":-0.8,\"end\":-0.6},{\"start\":-0.6,\"end\":-0.4},{\"start\":-0.4,\"end\":-0.2}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":514826369,"filterString":"EGFR: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -12TP53: Protein expression (RPPA): < x ≤ -2.2-0.2","data":{"genomicDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-1,"end":-0.5},{"start":-0.5,"end":0},{"start":0,"end":0.5},{"start":0.5,"end":1},{"start":1,"end":1.5},{"start":1.5,"end":2}]},{"hugoGeneSymbol":"TP53","profileType":"rppa","values":[{"start":-2.2,"end":-2},{"start":-2,"end":-1.8},{"start":-1.8,"end":-1.6},{"start":-1.6,"end":-1.4},{"start":-1.4,"end":-1.2},{"start":-1.2,"end":-1},{"start":-1,"end":-0.8},{"start":-0.8,"end":-0.6},{"start":-0.6,"end":-0.4},{"start":-0.4,"end":-0.2}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-1,\"end\":-0.5},{\"start\":-0.5,\"end\":0},{\"start\":0,\"end\":0.5},{\"start\":0.5,\"end\":1},{\"start\":1,\"end\":1.5},{\"start\":1.5,\"end\":2}]},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa\",\"values\":[{\"start\":-2.2,\"end\":-2},{\"start\":-2,\"end\":-1.8},{\"start\":-1.8,\"end\":-1.6},{\"start\":-1.6,\"end\":-1.4},{\"start\":-1.4,\"end\":-1.2},{\"start\":-1.2,\"end\":-1},{\"start\":-1,\"end\":-0.8},{\"start\":-0.8,\"end\":-0.6},{\"start\":-0.6,\"end\":-0.4},{\"start\":-0.4,\"end\":-0.2}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":908457008,"filterString":"EGFR: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -12TP53: Protein expression (RPPA): < x ≤ -2.2-0.2","data":{"genomicDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-1,"end":-0.5},{"start":-0.5,"end":0},{"start":0,"end":0.5},{"start":0.5,"end":1},{"start":1,"end":1.5},{"start":1.5,"end":2}]},{"hugoGeneSymbol":"TP53","profileType":"rppa","values":[{"start":-2.2,"end":-2},{"start":-2,"end":-1.8},{"start":-1.8,"end":-1.6},{"start":-1.6,"end":-1.4},{"start":-1.4,"end":-1.2},{"start":-1.2,"end":-1},{"start":-1,"end":-0.8},{"start":-0.8,"end":-0.6},{"start":-0.6,"end":-0.4},{"start":-0.4,"end":-0.2}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-1,\"end\":-0.5},{\"start\":-0.5,\"end\":0},{\"start\":0,\"end\":0.5},{\"start\":0.5,\"end\":1},{\"start\":1,\"end\":1.5},{\"start\":1.5,\"end\":2}]},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa\",\"values\":[{\"start\":-2.2,\"end\":-2},{\"start\":-2,\"end\":-1.8},{\"start\":-1.8,\"end\":-1.6},{\"start\":-1.6,\"end\":-1.4},{\"start\":-1.4,\"end\":-1.2},{\"start\":-1.2,\"end\":-1},{\"start\":-1,\"end\":-0.8},{\"start\":-0.8,\"end\":-0.6},{\"start\":-0.6,\"end\":-0.4},{\"start\":-0.4,\"end\":-0.2}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1126057128,"filterString":"EGFR: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -12TP53: Protein expression (RPPA): < x ≤ -2.2-0.2","data":{"genomicDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-1,"end":-0.5},{"start":-0.5,"end":0},{"start":0,"end":0.5},{"start":0.5,"end":1},{"start":1,"end":1.5},{"start":1.5,"end":2}]},{"hugoGeneSymbol":"TP53","profileType":"rppa","values":[{"start":-2.2,"end":-2},{"start":-2,"end":-1.8},{"start":-1.8,"end":-1.6},{"start":-1.6,"end":-1.4},{"start":-1.4,"end":-1.2},{"start":-1.2,"end":-1},{"start":-1,"end":-0.8},{"start":-0.8,"end":-0.6},{"start":-0.6,"end":-0.4},{"start":-0.4,"end":-0.2}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-1,\"end\":-0.5},{\"start\":-0.5,\"end\":0},{\"start\":0,\"end\":0.5},{\"start\":0.5,\"end\":1},{\"start\":1,\"end\":1.5},{\"start\":1.5,\"end\":2}]},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa\",\"values\":[{\"start\":-2.2,\"end\":-2},{\"start\":-2,\"end\":-1.8},{\"start\":-1.8,\"end\":-1.6},{\"start\":-1.6,\"end\":-1.4},{\"start\":-1.4,\"end\":-1.2},{\"start\":-1.2,\"end\":-1},{\"start\":-1,\"end\":-0.8},{\"start\":-0.8,\"end\":-0.6},{\"start\":-0.6,\"end\":-0.4},{\"start\":-0.4,\"end\":-0.2}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1274481956,"filterString":"EGFR: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -12TP53: Protein expression (RPPA): < x ≤ -2.2-0.2","data":{"genomicDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-1,"end":-0.5},{"start":-0.5,"end":0},{"start":0,"end":0.5},{"start":0.5,"end":1},{"start":1,"end":1.5},{"start":1.5,"end":2}]},{"hugoGeneSymbol":"TP53","profileType":"rppa","values":[{"start":-2.2,"end":-2},{"start":-2,"end":-1.8},{"start":-1.8,"end":-1.6},{"start":-1.6,"end":-1.4},{"start":-1.4,"end":-1.2},{"start":-1.2,"end":-1},{"start":-1,"end":-0.8},{"start":-0.8,"end":-0.6},{"start":-0.6,"end":-0.4},{"start":-0.4,"end":-0.2}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-1,\"end\":-0.5},{\"start\":-0.5,\"end\":0},{\"start\":0,\"end\":0.5},{\"start\":0.5,\"end\":1},{\"start\":1,\"end\":1.5},{\"start\":1.5,\"end\":2}]},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa\",\"values\":[{\"start\":-2.2,\"end\":-2},{\"start\":-2,\"end\":-1.8},{\"start\":-1.8,\"end\":-1.6},{\"start\":-1.6,\"end\":-1.4},{\"start\":-1.4,\"end\":-1.2},{\"start\":-1.2,\"end\":-1},{\"start\":-1,\"end\":-0.8},{\"start\":-0.8,\"end\":-0.6},{\"start\":-0.6,\"end\":-0.4},{\"start\":-0.4,\"end\":-0.2}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-341016470,"filterString":"EGFR: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -12TP53: Protein expression (RPPA): < x ≤ -2.2-0.2","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"genomicDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-1,"end":-0.5},{"start":-0.5,"end":0},{"start":0,"end":0.5},{"start":0.5,"end":1},{"start":1,"end":1.5},{"start":1.5,"end":2}]},{"hugoGeneSymbol":"TP53","profileType":"rppa","values":[{"start":-2.2,"end":-2},{"start":-2,"end":-1.8},{"start":-1.8,"end":-1.6},{"start":-1.6,"end":-1.4},{"start":-1.4,"end":-1.2},{"start":-1.2,"end":-1},{"start":-1,"end":-0.8},{"start":-0.8,"end":-0.6},{"start":-0.6,"end":-0.4},{"start":-0.4,"end":-0.2}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-1,\"end\":-0.5},{\"start\":-0.5,\"end\":0},{\"start\":0,\"end\":0.5},{\"start\":0.5,\"end\":1},{\"start\":1,\"end\":1.5},{\"start\":1.5,\"end\":2}]},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa\",\"values\":[{\"start\":-2.2,\"end\":-2},{\"start\":-2,\"end\":-1.8},{\"start\":-1.8,\"end\":-1.6},{\"start\":-1.6,\"end\":-1.4},{\"start\":-1.4,\"end\":-1.2},{\"start\":-1.2,\"end\":-1},{\"start\":-1,\"end\":-0.8},{\"start\":-0.8,\"end\":-0.6},{\"start\":-0.6,\"end\":-0.4},{\"start\":-0.4,\"end\":-0.2}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1818300242,"filterString":"EGFR: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -12TP53: Protein expression (RPPA): < x ≤ -2.2-0.2","data":{"genomicDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-1,"end":-0.5},{"start":-0.5,"end":0},{"start":0,"end":0.5},{"start":0.5,"end":1},{"start":1,"end":1.5},{"start":1.5,"end":2}]},{"hugoGeneSymbol":"TP53","profileType":"rppa","values":[{"start":-2.2,"end":-2},{"start":-2,"end":-1.8},{"start":-1.8,"end":-1.6},{"start":-1.6,"end":-1.4},{"start":-1.4,"end":-1.2},{"start":-1.2,"end":-1},{"start":-1,"end":-0.8},{"start":-0.8,"end":-0.6},{"start":-0.6,"end":-0.4},{"start":-0.4,"end":-0.2}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-1,\"end\":-0.5},{\"start\":-0.5,\"end\":0},{\"start\":0,\"end\":0.5},{\"start\":0.5,\"end\":1},{\"start\":1,\"end\":1.5},{\"start\":1.5,\"end\":2}]},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa\",\"values\":[{\"start\":-2.2,\"end\":-2},{\"start\":-2,\"end\":-1.8},{\"start\":-1.8,\"end\":-1.6},{\"start\":-1.6,\"end\":-1.4},{\"start\":-1.4,\"end\":-1.2},{\"start\":-1.2,\"end\":-1},{\"start\":-1,\"end\":-0.8},{\"start\":-0.8,\"end\":-0.6},{\"start\":-0.6,\"end\":-0.4},{\"start\":-0.4,\"end\":-0.2}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-2057215208,"filterString":"EGFR: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -12TP53: Protein expression (RPPA): < x ≤ -2.2-0.2","data":{"genomicDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-1,"end":-0.5},{"start":-0.5,"end":0},{"start":0,"end":0.5},{"start":0.5,"end":1},{"start":1,"end":1.5},{"start":1.5,"end":2}]},{"hugoGeneSymbol":"TP53","profileType":"rppa","values":[{"start":-2.2,"end":-2},{"start":-2,"end":-1.8},{"start":-1.8,"end":-1.6},{"start":-1.6,"end":-1.4},{"start":-1.4,"end":-1.2},{"start":-1.2,"end":-1},{"start":-1,"end":-0.8},{"start":-0.8,"end":-0.6},{"start":-0.6,"end":-0.4},{"start":-0.4,"end":-0.2}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-1,\"end\":-0.5},{\"start\":-0.5,\"end\":0},{\"start\":0,\"end\":0.5},{\"start\":0.5,\"end\":1},{\"start\":1,\"end\":1.5},{\"start\":1.5,\"end\":2}]},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa\",\"values\":[{\"start\":-2.2,\"end\":-2},{\"start\":-2,\"end\":-1.8},{\"start\":-1.8,\"end\":-1.6},{\"start\":-1.6,\"end\":-1.4},{\"start\":-1.4,\"end\":-1.2},{\"start\":-1.2,\"end\":-1},{\"start\":-1,\"end\":-0.8},{\"start\":-0.8,\"end\":-0.6},{\"start\":-0.6,\"end\":-0.4},{\"start\":-0.4,\"end\":-0.2}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-2043897696,"filterString":"EGFR: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM): < x ≤ -12TP53: Protein expression (RPPA): < x ≤ -2.2-0.2","data":{"genomicDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"rna_seq_v2_mrna_median_Zscores","values":[{"start":-1,"end":-0.5},{"start":-0.5,"end":0},{"start":0,"end":0.5},{"start":0.5,"end":1},{"start":1,"end":1.5},{"start":1.5,"end":2}]},{"hugoGeneSymbol":"TP53","profileType":"rppa","values":[{"start":-2.2,"end":-2},{"start":-2,"end":-1.8},{"start":-1.8,"end":-1.6},{"start":-1.6,"end":-1.4},{"start":-1.4,"end":-1.2},{"start":-1.2,"end":-1},{"start":-1,"end":-0.8},{"start":-0.8,"end":-0.6},{"start":-0.6,"end":-0.4},{"start":-0.4,"end":-0.2}]}],"studyIds":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["blca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=blca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"genomicDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"rna_seq_v2_mrna_median_Zscores\",\"values\":[{\"start\":-1,\"end\":-0.5},{\"start\":-0.5,\"end\":0},{\"start\":0,\"end\":0.5},{\"start\":0.5,\"end\":1},{\"start\":1,\"end\":1.5},{\"start\":1.5,\"end\":2}]},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"rppa\",\"values\":[{\"start\":-2.2,\"end\":-2},{\"start\":-2,\"end\":-1.8},{\"start\":-1.8,\"end\":-1.6},{\"start\":-1.6,\"end\":-1.4},{\"start\":-1.4,\"end\":-1.2},{\"start\":-1.2,\"end\":-1},{\"start\":-1,\"end\":-0.8},{\"start\":-0.8,\"end\":-0.6},{\"start\":-0.6,\"end\":-0.4},{\"start\":-0.4,\"end\":-0.2}]}],\"studyIds\":[\"blca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - } -] \ No newline at end of file diff --git a/apiTests/specs/mutation-data-counts.json b/apiTests/specs/mutation-data-counts.json deleted file mode 100644 index ed597d02151..00000000000 --- a/apiTests/specs/mutation-data-counts.json +++ /dev/null @@ -1,144 +0,0 @@ -[ - { - "name":"EGFR - Not mutated", - "note":"Testing mutation-data-counts on gene EGFR for not mutated option", - "filterUrl": "/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED", - "studies":[], - "tests":[ - {"hash":22051614,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":620673099,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1192356903,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1324133908,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1139160943,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-257272205,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-278160651,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1608562947,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1625005371,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1009057295,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"genomicDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations"}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/mutation-data-counts/fetch?projection=SUMMARY&","label":"MutationDataCounts","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - { - "name":"EGFR not mutated and TP53 mutated", - "note":"Testing mutation-data-counts on gene EGFR for not mutated option with gene TP53 for mutated option", - "filterUrl": "/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED", - "studies":[], - "tests":[ - {"hash":22051614,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":143713892,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":222803587,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":314140877,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":620673099,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":881434958,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"mutations"}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/mutation-data-counts/fetch?projection=SUMMARY&","label":"MutationDataCounts","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1192356903,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1248706660,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1324133908,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1428199453,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"mutations"}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/mutation-data-counts/fetch?projection=SUMMARY&","label":"MutationDataCounts","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1668007162,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1139160943,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-257272205,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-278160651,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1608562947,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1625005371,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1009057295,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"genomicDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations"}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/mutation-data-counts/fetch?projection=SUMMARY&","label":"MutationDataCounts","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-2112407976,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-2087113982,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1529241108,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-340189452,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1510622,"filterString":"EGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"genomicDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations"}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/mutation-data-counts/fetch?projection=SUMMARY&","label":"MutationDataCounts","studies":["brca_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - { - "name":"EGFR not mutated, TP53 mutated and KIT not mutated", - "note":"Testing mutation-data-counts on gene EGFR for not mutated option, gene TP53 for mutated option, and gene KIT for not mutated option", - "filterUrl": "/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED", - "studies":[], - "tests":[ - {"hash":178647819,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":277310196,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":278580013,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"mutations"}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/mutation-data-counts/fetch?projection=SUMMARY&","label":"MutationDataCounts","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":360256980,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":380625957,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":457045892,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":481416586,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":715368392,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":927275539,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1126223694,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1140942412,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"genomicDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations"}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/mutation-data-counts/fetch?projection=SUMMARY&","label":"MutationDataCounts","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1170802177,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"genomicDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations"}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/mutation-data-counts/fetch?projection=SUMMARY&","label":"MutationDataCounts","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1432940156,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1550203105,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":2003099437,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":2143173755,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1609590030,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-747771555,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1073541122,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"genomicDataFilters":[{"hugoGeneSymbol":"TP53","profileType":"mutations"}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/mutation-data-counts/fetch?projection=SUMMARY&","label":"MutationDataCounts","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-819305774,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATED","data":{"genomicDataFilters":[{"hugoGeneSymbol":"EGFR","profileType":"mutations"}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/mutation-data-counts/fetch?projection=SUMMARY&","label":"MutationDataCounts","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-720781833,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1688390826,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1804503997,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-53896411,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1725071627,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-880239237,"filterString":"KIT: Mutations: Mutated vs Not Mutated:NOT MUTATEDEGFR: Mutations: Mutated vs Not Mutated:NOT MUTATEDTP53: Mutations: Mutated vs Not Mutated:MUTATED","data":{"genomicDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations"}],"studyViewFilter":{"mutationDataFilters":[{"hugoGeneSymbol":"KIT","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"EGFR","profileType":"mutations","values":[[{"value":"NOT_MUTATED"}]],"categorization":"MUTATED"},{"hugoGeneSymbol":"TP53","profileType":"mutations","values":[[{"value":"MUTATED"}]],"categorization":"MUTATED"}],"studyIds":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/mutation-data-counts/fetch?projection=SUMMARY&","label":"MutationDataCounts","studies":["brca_tcga_pan_can_atlas_2018","coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=brca_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018#filterJson={\"mutationDataFilters\":[{\"hugoGeneSymbol\":\"KIT\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"EGFR\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"NOT_MUTATED\"}]],\"categorization\":\"MUTATED\"},{\"hugoGeneSymbol\":\"TP53\",\"profileType\":\"mutations\",\"values\":[[{\"value\":\"MUTATED\"}]],\"categorization\":\"MUTATED\"}],\"studyIds\":[\"brca_tcga_pan_can_atlas_2018\",\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - } -] \ No newline at end of file diff --git a/apiTests/specs/sample-lists-counts-filter.json b/apiTests/specs/sample-lists-counts-filter.json deleted file mode 100644 index 89b724003f9..00000000000 --- a/apiTests/specs/sample-lists-counts-filter.json +++ /dev/null @@ -1,169 +0,0 @@ -[ - { - "name":"filter on one sample list", - "note":"testing filter of one sample list on one tcga study", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Samples with mutation data", - "studies":["coadread_tcga_pan_can_atlas_2018"], - "tests":[ - {"hash":866410181,"filterString":"Samples with mutation data","data":{"caseLists":[["sequenced"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1149121007,"filterString":"Samples with mutation data","data":{"caseLists":[["sequenced"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1163999981,"filterString":"Samples with mutation data","data":{"caseLists":[["sequenced"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1759009751,"filterString":"Samples with mutation data","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"caseLists":[["sequenced"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1937341369,"filterString":"Samples with mutation data","data":{"caseLists":[["sequenced"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-416829426,"filterString":"Samples with mutation data","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"}],"studyViewFilter":{"caseLists":[["sequenced"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1551038568,"filterString":"Samples with mutation data","data":{"caseLists":[["sequenced"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-297511361,"filterString":"Samples with mutation data","data":{"caseLists":[["sequenced"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-289903881,"filterString":"Samples with mutation data","data":{"caseLists":[["sequenced"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - - { - "name":"filter on intersection of three sample lists", - "note":"testing filter of an intersection of three sample lists on one tcga study", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"],[\"protein_quantification\"],[\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Samples with mutation data AND Samples with protein data (Mass Spec) AND All Tumors", - "studies":["coadread_tcga_pan_can_atlas_2018"], - "tests":[ - {"hash":383071101,"filterString":"Samples with mutation data AND Samples with protein data (Mass Spec) AND All Tumors","data":{"caseLists":[["sequenced"],["protein_quantification"],["coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"],[\"protein_quantification\"],[\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":751585015,"filterString":"Samples with mutation data AND Samples with protein data (Mass Spec) AND All Tumors","data":{"caseLists":[["sequenced"],["protein_quantification"],["coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"],[\"protein_quantification\"],[\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":832689153,"filterString":"Samples with mutation data AND Samples with protein data (Mass Spec) AND All Tumors","data":{"caseLists":[["sequenced"],["protein_quantification"],["coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"],[\"protein_quantification\"],[\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1092029607,"filterString":"Samples with mutation data AND Samples with protein data (Mass Spec) AND All Tumors","data":{"caseLists":[["sequenced"],["protein_quantification"],["coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"],[\"protein_quantification\"],[\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1161151797,"filterString":"Samples with mutation data AND Samples with protein data (Mass Spec) AND All Tumors","data":{"caseLists":[["sequenced"],["protein_quantification"],["coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"],[\"protein_quantification\"],[\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1612343521,"filterString":"Samples with mutation data AND Samples with protein data (Mass Spec) AND All Tumors","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"caseLists":[["sequenced"],["protein_quantification"],["coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"],[\"protein_quantification\"],[\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-90997818,"filterString":"Samples with mutation data AND Samples with protein data (Mass Spec) AND All Tumors","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"}],"studyViewFilter":{"caseLists":[["sequenced"],["protein_quantification"],["coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"],[\"protein_quantification\"],[\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1814453168,"filterString":"Samples with mutation data AND Samples with protein data (Mass Spec) AND All Tumors","data":{"caseLists":[["sequenced"],["protein_quantification"],["coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"],[\"protein_quantification\"],[\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1751424593,"filterString":"Samples with mutation data AND Samples with protein data (Mass Spec) AND All Tumors","data":{"caseLists":[["sequenced"],["protein_quantification"],["coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\"],[\"protein_quantification\"],[\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - - { - "name":"filter on union of three sample lists", - "note":"testing filter of a union of three sample lists on one tcga study", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\",\"protein_quantification\",\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": " (Samples with mutation data OR Samples with protein data (Mass Spec) OR All Tumors) ", - "studies":["coadread_tcga_pan_can_atlas_2018"], - "tests":[ - {"hash":469752001,"filterString":" (Samples with mutation data OR Samples with protein data (Mass Spec) OR All Tumors) ","data":{"caseLists":[["sequenced","protein_quantification","coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\",\"protein_quantification\",\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":627529616,"filterString":" (Samples with mutation data OR Samples with protein data (Mass Spec) OR All Tumors) ","data":{"caseLists":[["sequenced","protein_quantification","coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\",\"protein_quantification\",\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":2027739703,"filterString":" (Samples with mutation data OR Samples with protein data (Mass Spec) OR All Tumors) ","data":{"caseLists":[["sequenced","protein_quantification","coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\",\"protein_quantification\",\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":2027944437,"filterString":" (Samples with mutation data OR Samples with protein data (Mass Spec) OR All Tumors) ","data":{"caseLists":[["sequenced","protein_quantification","coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\",\"protein_quantification\",\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-176663329,"filterString":" (Samples with mutation data OR Samples with protein data (Mass Spec) OR All Tumors) ","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"caseLists":[["sequenced","protein_quantification","coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\",\"protein_quantification\",\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1250812410,"filterString":" (Samples with mutation data OR Samples with protein data (Mass Spec) OR All Tumors) ","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"}],"studyViewFilter":{"caseLists":[["sequenced","protein_quantification","coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\",\"protein_quantification\",\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-169204035,"filterString":" (Samples with mutation data OR Samples with protein data (Mass Spec) OR All Tumors) ","data":{"caseLists":[["sequenced","protein_quantification","coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\",\"protein_quantification\",\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1125707801,"filterString":" (Samples with mutation data OR Samples with protein data (Mass Spec) OR All Tumors) ","data":{"caseLists":[["sequenced","protein_quantification","coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\",\"protein_quantification\",\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1200683793,"filterString":" (Samples with mutation data OR Samples with protein data (Mass Spec) OR All Tumors) ","data":{"caseLists":[["sequenced","protein_quantification","coad"]],"studyIds":["coadread_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"sequenced\",\"protein_quantification\",\"coad\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - - { - "name":"filter on one sample list for two studies", - "note":"testing filter of one sample list on two tcga studies", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Samples with protein data (RPPA)", - "studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"], - "tests":[ - {"hash":515521465,"filterString":"Samples with protein data (RPPA)","data":{"caseLists":[["rppa"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":634740897,"filterString":"Samples with protein data (RPPA)","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"caseLists":[["rppa"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":842194000,"filterString":"Samples with protein data (RPPA)","data":{"caseLists":[["rppa"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1486907628,"filterString":"Samples with protein data (RPPA)","data":{"caseLists":[["rppa"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-550666830,"filterString":"Samples with protein data (RPPA)","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"caseLists":[["rppa"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1282542624,"filterString":"Samples with protein data (RPPA)","data":{"caseLists":[["rppa"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-632242696,"filterString":"Samples with protein data (RPPA)","data":{"caseLists":[["rppa"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-642497562,"filterString":"Samples with protein data (RPPA)","data":{"caseLists":[["rppa"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1118081576,"filterString":"Samples with protein data (RPPA)","data":{"caseLists":[["rppa"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - - { - "name":"filter on intersection of three case lists for two studies", - "note":"testing filter of an intersection of three sample lists on two tcga studies", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"],[\"read\"],[\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": "Samples with protein data (RPPA) AND All Tumors AND Samples with mutation and CNA data", - "studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"], - "tests":[ - {"hash":53680963,"filterString":"Samples with protein data (RPPA) AND All Tumors AND Samples with mutation and CNA data","data":{"caseLists":[["rppa"],["read"],["cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"],[\"read\"],[\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":71164185,"filterString":"Samples with protein data (RPPA) AND All Tumors AND Samples with mutation and CNA data","data":{"caseLists":[["rppa"],["read"],["cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"],[\"read\"],[\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":588558105,"filterString":"Samples with protein data (RPPA) AND All Tumors AND Samples with mutation and CNA data","data":{"caseLists":[["rppa"],["read"],["cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"],[\"read\"],[\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":740410348,"filterString":"Samples with protein data (RPPA) AND All Tumors AND Samples with mutation and CNA data","data":{"caseLists":[["rppa"],["read"],["cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"],[\"read\"],[\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":785192084,"filterString":"Samples with protein data (RPPA) AND All Tumors AND Samples with mutation and CNA data","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"caseLists":[["rppa"],["read"],["cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"],[\"read\"],[\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":2046240485,"filterString":"Samples with protein data (RPPA) AND All Tumors AND Samples with mutation and CNA data","data":{"caseLists":[["rppa"],["read"],["cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"],[\"read\"],[\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-310950369,"filterString":"Samples with protein data (RPPA) AND All Tumors AND Samples with mutation and CNA data","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"caseLists":[["rppa"],["read"],["cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"],[\"read\"],[\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1116606317,"filterString":"Samples with protein data (RPPA) AND All Tumors AND Samples with mutation and CNA data","data":{"caseLists":[["rppa"],["read"],["cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"],[\"read\"],[\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1856037301,"filterString":"Samples with protein data (RPPA) AND All Tumors AND Samples with mutation and CNA data","data":{"caseLists":[["rppa"],["read"],["cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"rppa\"],[\"read\"],[\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - }, - - - { - "name":"filter on union of three case lists for two studies", - "note":"testing filter of a union of three sample lists on two tcga studies", - "filterURL": "/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"cna\",\"read\",\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}", - "filterText": " (Samples with CNA data OR All Tumors OR Samples with mutation and CNA data) ", - "studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"], - "tests":[ - {"hash":361026600,"filterString":" (Samples with CNA data OR All Tumors OR Samples with mutation and CNA data) ","data":{"caseLists":[["cna","read","cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/clinical-data-density-plot/fetch?xAxisAttributeId=FRACTION_GENOME_ALTERED&xAxisBinCount=44&xAxisStart=0&xAxisEnd=1&yAxisAttributeId=MUTATION_COUNT&yAxisBinCount=38&yAxisStart=0&xAxisLogScale=false&yAxisLogScale=false&","label":"ClinicalDataDensity","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"cna\",\"read\",\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":760591814,"filterString":" (Samples with CNA data OR All Tumors OR Samples with mutation and CNA data) ","data":{"attributes":[{"attributeId":"MUTATION_COUNT","disableLogScale":false,"showNA":false},{"attributeId":"FRACTION_GENOME_ALTERED","disableLogScale":false,"showNA":false},{"attributeId":"AGE","disableLogScale":false,"showNA":false},{"attributeId":"MSI_SCORE_MANTIS","disableLogScale":false,"showNA":false,"customBins":[0.4,0.6]},{"attributeId":"MSI_SENSOR_SCORE","disableLogScale":false,"showNA":false,"customBins":[4,10]},{"attributeId":"ANEUPLOIDY_SCORE","disableLogScale":false,"showNA":false},{"attributeId":"DAYS_TO_BIRTH","disableLogScale":false,"showNA":false}],"studyViewFilter":{"caseLists":[["cna","read","cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-bin-counts/fetch?dataBinMethod=STATIC&","label":"ClinicalDataBin","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"cna\",\"read\",\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1774242588,"filterString":" (Samples with CNA data OR All Tumors OR Samples with mutation and CNA data) ","data":{"caseLists":[["cna","read","cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/filtered-samples/fetch?","label":"FilteredSamples","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"cna\",\"read\",\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1802772817,"filterString":" (Samples with CNA data OR All Tumors OR Samples with mutation and CNA data) ","data":{"attributes":[{"attributeId":"OS_STATUS"},{"attributeId":"DFS_STATUS"},{"attributeId":"DSS_STATUS"},{"attributeId":"PFS_STATUS"},{"attributeId":"SUBTYPE"},{"attributeId":"PATH_M_STAGE"},{"attributeId":"TUMOR_TYPE"},{"attributeId":"PATH_T_STAGE"},{"attributeId":"SEX"},{"attributeId":"ETHNICITY"},{"attributeId":"AJCC_STAGING_EDITION"},{"attributeId":"RACE"},{"attributeId":"CANCER_TYPE_DETAILED"},{"attributeId":"OS_STATUS"},{"attributeId":"CANCER_TYPE"}],"studyViewFilter":{"caseLists":[["cna","read","cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}}},"url":"/api/column-store/clinical-data-counts/fetch?","label":"ClinicalDataCounts","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"cna\",\"read\",\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":1930437032,"filterString":" (Samples with CNA data OR All Tumors OR Samples with mutation and CNA data) ","data":{"caseLists":[["cna","read","cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/cna-genes/fetch?","label":"CNAGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"cna\",\"read\",\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-874302583,"filterString":" (Samples with CNA data OR All Tumors OR Samples with mutation and CNA data) ","data":{"caseLists":[["cna","read","cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/molecular-profile-sample-counts/fetch?","label":"MolecularProfileSample","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"cna\",\"read\",\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-1156570192,"filterString":" (Samples with CNA data OR All Tumors OR Samples with mutation and CNA data) ","data":{"caseLists":[["cna","read","cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/sample-lists-counts/fetch?","label":"CaseList","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"cna\",\"read\",\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-235271242,"filterString":" (Samples with CNA data OR All Tumors OR Samples with mutation and CNA data) ","data":{"caseLists":[["cna","read","cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/structuralvariant-genes/fetch?","label":"StructuralVariantGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"cna\",\"read\",\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"}, - - {"hash":-741791712,"filterString":" (Samples with CNA data OR All Tumors OR Samples with mutation and CNA data) ","data":{"caseLists":[["cna","read","cnaseq"]],"studyIds":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"alterationFilter":{"copyNumberAlterationEventTypes":{"AMP":true,"HOMDEL":true},"mutationEventTypes":{"any":true},"structuralVariants":null,"includeDriver":true,"includeVUS":true,"includeUnknownOncogenicity":true,"includeUnknownTier":true,"includeGermline":true,"includeSomatic":true,"includeUnknownStatus":true,"tiersBooleanMap":{}}},"url":"/api/column-store/mutated-genes/fetch?","label":"MutatedGenes","studies":["coadread_tcga_pan_can_atlas_2018","lgg_tcga_pan_can_atlas_2018"],"filterUrl":"/study/summary?id=coadread_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018#filterJson={\"caseLists\":[[\"cna\",\"read\",\"cnaseq\"]],\"studyIds\":[\"coadread_tcga_pan_can_atlas_2018\",\"lgg_tcga_pan_can_atlas_2018\"],\"alterationFilter\":{\"copyNumberAlterationEventTypes\":{\"AMP\":true,\"HOMDEL\":true},\"mutationEventTypes\":{\"any\":true},\"structuralVariants\":null,\"includeDriver\":true,\"includeVUS\":true,\"includeUnknownOncogenicity\":true,\"includeUnknownTier\":true,\"includeGermline\":true,\"includeSomatic\":true,\"includeUnknownStatus\":true,\"tiersBooleanMap\":{}}}"} - ] - } - -] \ No newline at end of file