Skip to content

Navigation Menu

Appearance settings

Explore
By company size
By use case
By industry
View all solutions
Topics
- AI
- DevOps
- Security
- Software Development
- View all
Explore
- GitHub Sponsors
  Fund open source developers
- The ReadME Project
  GitHub community articles
Repositories
- Enterprise platform
  AI-powered developer platform
Available add-ons
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

broadinstitute / gatk Public

Notifications You must be signed in to change notification settings
Fork 609
Star 1.8k

Code
Issues 1.3k
Pull requests 140
Discussions
Actions
Projects
Wiki
Security
Insights

Additional navigation options

Code
Issues
Pull requests
Discussions
Actions
Projects
Wiki
Security
Insights

Home

Jump to bottom

Adam Kiezun edited this page Jun 17, 2015 · 6 revisions

Welcome to the hellbender wiki!

Toggle table of contents Pages 26

Home
Build GATK with a locally built htsjdk or Hadoop BAM
Checks and tests guidelines
Creating a Cloudera Cluster in the Cloud
Debugging Spark
Deprecating GATK Features
Efficiently Copying Files into HDFS
Expand outdated Github Comments
Forum How to update gatk tools doc to default to the latest version
GATK Metrics Collectors
GATK4 Documentation Generation
GATK4 Documentation Guidelines
Guidelines for updating GATK javadoc
hdfs paths on the broad cluster
How to Get a File off the Broad Server
How to Prepare a GATK tool for WDL Auto Generation
How to release GATK4
How to set up and use cloud dev environment
How to Share a Large File with a Forum User
How to update the gatk base docker
Running Intel PAT on Dataproc
Setting a gcs bucket to be public
Spark Evaluation Results
Switching to Java 17
Troubleshooting Spark
Writing GATK Tools that use Python

Clone this wiki locally

Footer

© 2025 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Docs
Contact

You can’t perform that action at this time.