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GATK4.5.0.0 HaplotypeCaller exits with error code 245 while no error message
#9104
opened Feb 28, 2025 by
Alipha-Clisa
updated Feb 28, 2025
GtfToBed errors out with
because "gene" is null
#9103
opened Feb 27, 2025 by
mmahmoudian
updated Feb 27, 2025
Efficiently perform simple merge/append on many VCFs?
#9097
opened Feb 18, 2025 by
bbimber
updated Feb 18, 2025
Enabling PDHMM causes GVCF mode to fail.
#9041
opened Nov 13, 2024 by
gokalpcelik
updated Jan 15, 2025
FilterAlignmentArtifacts - Padded span must contain active span
#9075
opened Jan 14, 2025 by
dansteiert
updated Jan 14, 2025
Problem in gvcf interplay between clair3 and gatk
#9068
opened Jan 6, 2025 by
johannesgeibel
updated Jan 6, 2025
VariantAnnotator giving error "No overlapping contigs found"
#9067
opened Jan 3, 2025 by
khanshahan
updated Jan 6, 2025
Reference isn't being parsed/detected correctly when using CalibrateDragstrModel in parallel mode
DRAGEN-GATK
#8139
opened Jan 3, 2023 by
nvnieuwk
updated Dec 30, 2024
1 of 2 tasks
Variant annotator step in jointcalling procedure
#9064
opened Dec 24, 2024 by
SiddhiJani
updated Dec 24, 2024
GATK 4.6. SelectVariants not applying --select filters
#9060
opened Dec 9, 2024 by
FLsandell
updated Dec 9, 2024
VariantRecalibrator R-script fails if
scales
v1.3.0 is installed
bug
#8664
opened Jan 23, 2024 by
MikkelSchubert
updated Nov 20, 2024
1 of 2 tasks
Could not load genomicsdb native library
GenomicsDB
#4124
opened Jan 11, 2018 by
owensgl
updated Nov 19, 2024
FilterIntervals will get rid of Y chromosome intervals if there are >50% of female samples
#9043
opened Nov 14, 2024 by
NotAPoetButACriminal
updated Nov 14, 2024
Document how multi-threading support works in GATK4
Documentation
#2345
opened Jan 17, 2017 by
magicDGS
updated Nov 11, 2024
Issue Running GATK Mitochondrial Pipeline
#9037
opened Nov 11, 2024 by
jingxiant
updated Nov 11, 2024
Memory issues when running BaseRecalibrator
#8726
opened Mar 9, 2024 by
MetteBoge
updated Nov 11, 2024
PON filtering logic and tag in vcf.gz file
#9035
opened Nov 7, 2024 by
YuanTian1991
updated Nov 7, 2024
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Updated in the last three days: updated:>2025-02-24.