diff --git a/CNV-Profiler/CNV-Profiler.wdl b/CNV-Profiler/CNV-Profiler.wdl index 26f8272..e3798bd 100644 --- a/CNV-Profiler/CNV-Profiler.wdl +++ b/CNV-Profiler/CNV-Profiler.wdl @@ -131,7 +131,7 @@ task GetPaddedCnvBed { with open('padded_cnv.bed', 'a') as f: for interval in padded_cnv_interval_list: - chrom = interval.split(':')[0] + chr = interval.split(':')[0] start = interval.split(':')[1].split('-')[0] end = interval.split(':')[1].split('-')[1] f.write(f"{chr}\t{start}\t{end}" + '\n')