From 6fd175f33baf480ba9dd200c388e73ae9a19132a Mon Sep 17 00:00:00 2001
From: Yueyao Gao <gaoyueya@broadinstitute.org>
Date: Tue, 2 Jul 2024 23:52:06 -0400
Subject: [PATCH] argument name bug fix

---
 CNV-Profiler/CNV-Profiler.wdl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/CNV-Profiler/CNV-Profiler.wdl b/CNV-Profiler/CNV-Profiler.wdl
index e3798bd..6487716 100644
--- a/CNV-Profiler/CNV-Profiler.wdl
+++ b/CNV-Profiler/CNV-Profiler.wdl
@@ -215,7 +215,7 @@ task cnvDepthProfiler{
             python3 /BaseImage/CovProfileViz/scripts/CNV_Depth_Profiler.py \
             -c ~{depthProfile} \
             -b ~{cnvBedFile} \
-            -n output/~{sampleName}
+            -o output/~{sampleName}
 
         >>>
         output {