Skip to content

Issues: bioinform/neusomatic

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
22 Open 30 Closed
22 Open 30 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Any plan to train NeuSomatic models in long-read platforms?
#87 opened Jan 4, 2024 by zhengzhenxian updated Jan 4, 2024
Inputs for docker image Variant call ( --checkpoint )
#86 opened Aug 16, 2023 by kiranpatil222 updated Aug 17, 2023
2
Fail in installing step
#83 opened Jul 26, 2022 by baoyl818 updated Jul 26, 2022
How to get the vaildation tsv?
#81 opened May 14, 2022 by wangjiangyuan updated May 19, 2022
1
How to deal with multiallelic variants?
#80 opened Apr 13, 2022 by leedchou updated Apr 13, 2022
Regarding the necessity of normal.bam file
#42 opened Jun 20, 2019 by ghost updated Feb 4, 2022
5
training using bamsurgeon on multiple samples
#79 opened Jan 19, 2022 by kiranchari updated Jan 19, 2022
adapt for ultra-deep sequencing data
#78 opened Nov 25, 2021 by WeiweiBian updated Nov 25, 2021
Exception: scan_alignments failed!
#77 opened Sep 2, 2021 by shiying-sxu updated Sep 2, 2021
Run preprocess.py on Colab
#75 opened Jul 2, 2021 by BlinkPSAhad updated Jul 2, 2021
Ensemble mode issue
#68 opened Dec 16, 2020 by JunhakAhn updated Dec 16, 2020
1
/bin/scan_alignments Not Found
#67 opened Oct 28, 2020 by ghost updated Oct 28, 2020
1
testing pretrined model
#65 opened Jun 9, 2020 by bingdiao-zbw updated Jun 19, 2020
7
How to access CGC files?
#62 opened Apr 20, 2020 by GolfDeltaFox updated Apr 22, 2020
1
Error: unable to open file or unable to determine types for file synthetic.vcf
#60 opened Apr 4, 2020 by gianfilippo updated Apr 20, 2020
31
Multi-patient training
#61 opened Apr 7, 2020 by chrissype updated Apr 7, 2020
2
failed at the last step
#53 opened Nov 24, 2019 by cbiitbian updated Dec 27, 2019
23
OSError: [Errno 12] Cannot allocate memory
#52 opened Nov 6, 2019 by jingmeng-bioinformatics updated Nov 10, 2019
2
It takes several days to preprocess BAM files for testing
#51 opened Nov 4, 2019 by jingmeng-bioinformatics updated Nov 5, 2019
2
truth somatic variant .vcf file
#50 opened Nov 1, 2019 by yueyangtime updated Nov 1, 2019
3
Model training
#48 opened Aug 31, 2019 by kokyriakidis updated Sep 1, 2019
1
Getting compilation error with latest codebase on Mac OS with gcc/g++ 9
#40 opened Jun 4, 2019 by yakneens updated Jun 6, 2019
1
ProTip! Add no:assignee to see everything that’s not assigned.