environment.yml

name: yeat
channels:
    - conda-forge
    - bioconda
    - defaults
dependencies:
    - bandage>=0.9
    - bbmap>=39.52
    - black=24.3
    - bowtie2>=2.5
    - canu>=2.2
    - chopper>=0.9
    - cmake>=3.31
    - fastp>=0.23
    - fastqc>=0.11
    - flye>=2.9
    - gfatools>=0.5
    - git-lfs>=3.6
    - gzip>=1.7
    - hifiasm>=0.19
    - hifiasm_meta>=hamtv0.3
    - mash>=2.3
    - megahit>=1.2
    - metamdbg>=1.0
    - nanofilt>=2.3
    - nanoplot>=1.20
    - pkg-config>=0.29
    - pandas>=1.4
    - pilon>=1.24
    - plass>=4.687d7
    - pulp=2.7
    - pytest>=7.1
    - pytest-cov>=3.0
    - python>=3.12
    - quast>=5.0
    - rust>=1.90
    - samtools>=1.23
    - seqtk>=1.3
    - seqkit>=2.12
    - snakemake-executor-plugin-slurm>=1.2
    - snakefmt=0.10
    - snakemake>=9.3
    - spades>=3.15
    - unicycler>=0.4