Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Some Questions about q2-fragment-insertion #84

Open
cafferychen777 opened this issue Sep 19, 2022 · 0 comments
Open

Some Questions about q2-fragment-insertion #84

cafferychen777 opened this issue Sep 19, 2022 · 0 comments

Comments

@cafferychen777
Copy link

I recently am using q2-fragment-insertion, which you developed in qiime2. It is a nice tool. And your tutorial said that it's more accurate than the previous tool. But my mentor and I encountered some difficulties. The plugin has a p-thread setting, but it seems not to work. My mentor and I are using qiime2-2022.8. My computer is an m1 MacBook air, and my mentor is an m1 max MacBook pro. When we set the threads to 20000 or 80000, CPU use doesn't increase. It will keep about 3000 threads. So, may you check the function of p--threads? I think it's a problem because it will cost me 12 hours to produce a tree instead of half an hour using the traditional tool.
Thank you for your contribution to the development of microbiome data analysis!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant