diff --git a/phylonco-beast/pom.xml b/phylonco-beast/pom.xml
index 7062f94..c7e0133 100644
--- a/phylonco-beast/pom.xml
+++ b/phylonco-beast/pom.xml
@@ -8,6 +8,7 @@
     </parent>
 
     <artifactId>phylonco-beast</artifactId>
+    <!-- must be consisting with version.xml   -->
     <version>1.2.0-SNAPSHOT</version>
 
     <properties>
diff --git a/phylonco-lphy-studio/pom.xml b/phylonco-lphy-studio/pom.xml
index d747e54..1a573d4 100644
--- a/phylonco-lphy-studio/pom.xml
+++ b/phylonco-lphy-studio/pom.xml
@@ -7,6 +7,7 @@
     </parent>
 
     <artifactId>phylonco-lphy-studio</artifactId>
+    <version>1.2.0-SNAPSHOT</version>
 
     <dependencies>
         <dependency>
@@ -18,9 +19,34 @@
         <dependency>
             <groupId>io.github.linguaphylo</groupId>
             <artifactId>lphy-studio</artifactId>
-            <version>1.6.0-SNAPSHOT</version>
+            <version>${lphy.vision}</version>
         </dependency>
     </dependencies>
 
-
+    <build>
+        <plugins>
+            <plugin>
+                <groupId>org.apache.maven.plugins</groupId>
+                <artifactId>maven-assembly-plugin</artifactId>
+                <version>3.7.1</version>
+                <configuration>
+                    <descriptors>
+                        <descriptor>src/assembly/phylonco-lphy-studio-assembly.xml</descriptor>
+                    </descriptors>
+                    <outputDirectory>${project.build.directory}</outputDirectory>
+                    <appendAssemblyId>false</appendAssemblyId>
+                    <finalName>${project.artifactId}-${project.version}</finalName>
+                </configuration>
+                <executions>
+                    <execution>
+                        <id>make-assembly</id> <!-- this is used for inheritance merges -->
+                        <phase>package</phase> <!-- bind to the packaging phase -->
+                        <goals>
+                            <goal>single</goal>
+                        </goals>
+                    </execution>
+                </executions>
+            </plugin>
+        </plugins>
+    </build>
 </project>
\ No newline at end of file
diff --git a/phylonco-lphy-studio/src/assembly/phylonco-lphy-studio-assembly.xml b/phylonco-lphy-studio/src/assembly/phylonco-lphy-studio-assembly.xml
new file mode 100644
index 0000000..9e90112
--- /dev/null
+++ b/phylonco-lphy-studio/src/assembly/phylonco-lphy-studio-assembly.xml
@@ -0,0 +1,76 @@
+<assembly xmlns="http://maven.apache.org/ASSEMBLY/2.2.0"
+          xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+          xsi:schemaLocation="http://maven.apache.org/ASSEMBLY/2.2.0 http://maven.apache.org/xsd/assembly-2.2.0.xsd">
+    <id>phylonco-lphy-studio-assembly</id>
+    <formats>
+        <format>dir</format>
+<!--        <format>zip</format>-->
+    </formats>
+    <includeBaseDirectory>false</includeBaseDirectory>
+
+    <moduleSets>
+        <moduleSet>
+            <useAllReactorProjects>true</useAllReactorProjects>
+            <includes>
+                <include>io.github.linguaphylo:phylonco-lphy</include>
+                <include>io.github.linguaphylo:phylonco-lphy-studio</include>
+            </includes>
+
+            <sources>
+                <includeModuleDirectory>false</includeModuleDirectory>
+                <fileSets>
+                    <fileSet>
+                        <outputDirectory>src/${module.artifactId}</outputDirectory>
+                        <excludes>
+                            <exclude>${project.build.directory}/**</exclude>
+                            <exclude>**/target/**</exclude>
+                            <exclude>**/lib/**</exclude>
+                            <exclude>**/examples/**</exclude>
+                        </excludes>
+                    </fileSet>
+                </fileSets>
+            </sources>
+        </moduleSet>
+    </moduleSets>
+    <fileSets>
+        <fileSet>
+            <directory>${project.basedir}/src/main/resources</directory>
+            <outputDirectory>src</outputDirectory>
+            <includes>
+                <include>lphy*.*</include>
+            </includes>
+        </fileSet>
+        <fileSet>
+            <directory>../examples</directory>
+            <outputDirectory>examples</outputDirectory>
+            <includes>
+                <include>**/*.lphy</include>
+                <include>**/data/**</include>
+            </includes>
+            <excludes>
+                <exclude>**/todo/**</exclude>
+                <exclude>**/*.log</exclude>
+                <exclude>**/*.trees</exclude>
+                <exclude>**/*.txt</exclude>
+            </excludes>
+        </fileSet>
+    </fileSets>
+<!--    <files>-->
+<!--        <file>-->
+<!--            <source>../README.md</source>-->
+<!--        </file>-->
+<!--        <file>-->
+<!--            <source>../LICENSE</source>-->
+<!--        </file>-->
+<!--    </files>-->
+    <dependencySets>
+        <dependencySet>
+            <outputDirectory>/lib</outputDirectory>
+            <includes>
+                <!-- only phylonco jars -->
+                <include>io.github.linguaphylo:phylonco-lphy</include>
+                <include>io.github.linguaphylo:phylonco-lphy-studio</include>
+            </includes>
+        </dependencySet>
+    </dependencySets>
+</assembly>
\ No newline at end of file
diff --git a/phylonco-lphy/pom.xml b/phylonco-lphy/pom.xml
index dc0f358..14a1c4f 100644
--- a/phylonco-lphy/pom.xml
+++ b/phylonco-lphy/pom.xml
@@ -1,6 +1,6 @@
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
          xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd">
-<modelVersion>4.0.0</modelVersion>
+    <modelVersion>4.0.0</modelVersion>
     <parent>
         <groupId>io.github.linguaphylo</groupId>
         <artifactId>beast-phylonco</artifactId>
@@ -8,14 +8,14 @@
     </parent>
 
     <artifactId>phylonco-lphy</artifactId>
+    <version>1.2.0-SNAPSHOT</version>
 
     <dependencies>
         <dependency>
             <groupId>io.github.linguaphylo</groupId>
             <artifactId>lphy-base</artifactId>
-            <version>1.6.0-SNAPSHOT</version>
+            <version>${lphy.vision}</version>
         </dependency>
     </dependencies>
 
-
 </project>
\ No newline at end of file
diff --git a/phylonco-lphybeast/pom.xml b/phylonco-lphybeast/pom.xml
index d8d5e35..efa3f45 100644
--- a/phylonco-lphybeast/pom.xml
+++ b/phylonco-lphybeast/pom.xml
@@ -7,12 +7,14 @@
     </parent>
 
     <artifactId>phylonco-lphybeast</artifactId>
+    <!-- must be consisting with version.xml   -->
+    <version>1.2.0-SNAPSHOT</version>
 
     <dependencies>
         <dependency>
             <groupId>io.github.linguaphylo</groupId>
             <artifactId>lphybeast</artifactId>
-            <version>1.2.0-SNAPSHOT</version>
+            <version>${lphybeast.vision}</version>
         </dependency>
 
         <dependency>
@@ -25,9 +27,33 @@
             <artifactId>phylonco-lphy</artifactId>
             <version>${project.version}</version>
         </dependency>
-
-
     </dependencies>
 
+    <build>
+        <plugins>
+            <plugin>
+                <groupId>org.apache.maven.plugins</groupId>
+                <artifactId>maven-assembly-plugin</artifactId>
+                <version>3.7.1</version>
+                <configuration>
+                    <descriptors>
+                        <descriptor>src/assembly/phylonco-lphybeast-assembly.xml</descriptor>
+                    </descriptors>
+                    <outputDirectory>${project.build.directory}</outputDirectory>
+                    <appendAssemblyId>false</appendAssemblyId>
+                    <finalName>${project.artifactId}-${project.version}</finalName>
+                </configuration>
+                <executions>
+                    <execution>
+                        <id>make-assembly</id> <!-- this is used for inheritance merges -->
+                        <phase>package</phase> <!-- bind to the packaging phase -->
+                        <goals>
+                            <goal>single</goal>
+                        </goals>
+                    </execution>
+                </executions>
+            </plugin>
+        </plugins>
+    </build>
 
 </project>
\ No newline at end of file
diff --git a/phylonco-lphybeast/src/assembly/phylonco-lphybeast-assembly.xml b/phylonco-lphybeast/src/assembly/phylonco-lphybeast-assembly.xml
new file mode 100644
index 0000000..178c6ec
--- /dev/null
+++ b/phylonco-lphybeast/src/assembly/phylonco-lphybeast-assembly.xml
@@ -0,0 +1,51 @@
+<assembly xmlns="http://maven.apache.org/ASSEMBLY/2.2.0"
+          xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+          xsi:schemaLocation="http://maven.apache.org/ASSEMBLY/2.2.0 http://maven.apache.org/xsd/assembly-2.2.0.xsd">
+    <id>phylonco-lphybeast-assembly</id>
+    <formats>
+        <format>dir</format>
+        <format>zip</format>
+    </formats>
+    <includeBaseDirectory>false</includeBaseDirectory>
+<!--    <baseDirectory>${project.artifactId}-${project.version}</baseDirectory>-->
+
+    <moduleSets>
+        <moduleSet>
+            <useAllReactorProjects>true</useAllReactorProjects>
+            <includes>
+                <include>io.github.linguaphylo:phylonco-lphybeast</include>
+            </includes>
+
+            <sources>
+                <includeModuleDirectory>false</includeModuleDirectory>
+                <fileSets>
+                    <fileSet>
+                        <outputDirectory>src/${module.artifactId}</outputDirectory>
+                        <excludes>
+                            <exclude>${project.build.directory}/**</exclude>
+                            <exclude>**/target/**</exclude>
+                            <exclude>**/lib/**</exclude>
+                        </excludes>
+                    </fileSet>
+                </fileSets>
+            </sources>
+        </moduleSet>
+    </moduleSets>
+    <files>
+        <file>
+            <source>version.xml</source>
+        </file>
+    </files>
+    <dependencySets>
+        <!-- Dependency set for lphybeast with useTransitiveDependencies set to false -->
+        <dependencySet>
+            <outputDirectory>/lib</outputDirectory>
+            <includes>
+                <include>io.github.linguaphylo:phylonco-lphybeast</include>
+            </includes>
+            <useTransitiveDependencies>false</useTransitiveDependencies>
+        </dependencySet>
+
+    </dependencySets>
+
+</assembly>
\ No newline at end of file
diff --git a/phylonco-lphybeast/version.xml b/phylonco-lphybeast/version.xml
index 5088b27..ad5aa12 100644
--- a/phylonco-lphybeast/version.xml
+++ b/phylonco-lphybeast/version.xml
@@ -1,43 +1,15 @@
-<package name='phylonco' version='1.1.0'>
+<package name='phylonco.lphybeast' version='1.2.0'>
     <!-- phylonco beast -->
-    <depends on='BEAST.base' atleast='2.7.6'/>
-    <depends on='BEAST.app' atleast='2.7.6'/>
-    <depends on='BEASTLabs' atleast='2.0.2'/>
-    <depends on='lphybeast' atleast='1.1.0'/>
+    <depends on='phylonco' atleast='1.2.0'/>
+    <depends on='lphybeast' atleast='1.2.0'/>
 
     <!-- add BEAST2 service below  -->
     <service type="beast.base.evolution.datatype.DataType">
-        <provider classname="phylonco.beast.evolution.datatype.NucleotideDiploid10"/>
-        <provider classname="phylonco.beast.evolution.datatype.NucleotideDiploid16"/>
-        <provider classname="phylonco.beast.evolution.datatype.NucleotideMethylation"/>
-        <provider classname="phylonco.beast.evolution.datatype.Ternary"/>
+        <!-- any ? -->
+<!--        <provider classname="phylonco.beast.evolution.datatype.NucleotideDiploid10"/>-->
     </service>
     <service type="beast.base.core.BEASTInterface">
-        <provider classname="phylonco.beast.evolution.datatype.NucleotideDiploid10"/>
-        <provider classname="phylonco.beast.evolution.datatype.NucleotideDiploid16"/>
-        <provider classname="phylonco.beast.evolution.datatype.NucleotideMethylation"/>
-        <provider classname="phylonco.beast.evolution.datatype.Ternary"/>
-        <provider classname="phylonco.beast.evolution.errormodel.BinaryErrorModel"/>
-        <provider classname="phylonco.beast.evolution.errormodel.ErrorModel"/>
-        <provider classname="phylonco.beast.evolution.errormodel.ErrorModelBase"/>
-        <provider classname="phylonco.beast.evolution.errormodel.GT16ErrorModel"/>
-        <provider classname="phylonco.beast.evolution.likelihood.BeagleTreeLikelihoodWithError"/>
-        <provider classname="phylonco.beast.evolution.likelihood.TreeLikelihoodWithError"/>
-        <provider classname="phylonco.beast.evolution.likelihood.TreeLikelihoodWithErrorFast"/>
-        <provider classname="phylonco.beast.evolution.likelihood.TreeLikelihoodWithErrorSlow"/>
-        <provider classname="phylonco.beast.evolution.substitutionmodel.BinarySubstitutionModel"/>
-        <provider classname="phylonco.beast.evolution.substitutionmodel.GT16"/>
-        <provider classname="phylonco.beast.evolution.substitutionmodel.MethylationHKY"/>
-        <provider classname="phylonco.beast.evolution.substitutionmodel.SiFit2"/>
-        <provider classname="phylonco.beast.evolution.substitutionmodel.SiFit3"/>
-        <provider classname="phylonco.beast.evolution.populationmodel.GompertzGrowth_f0"/>
-        <provider classname="phylonco.beast.evolution.populationmodel.ExponentialGrowth"/>
-        <provider classname="phylonco.beast.evolution.populationmodel.LogisticGrowth"/>
-        <provider classname="phylonco.beast.evolution.populationmodel.GompertzGrowth_t50"/>
-        <provider classname="phylonco.beast.evolution.populationmodel.ConstantGrowth"/>
-        <provider classname="phylonco.beast.evolution.populationmodel.StochasticVariableSelection"/>
-
-
+<!-- any ? -->
     </service>
 
     <!-- add lphybeast ext below  -->
diff --git a/pom.xml b/pom.xml
index 43e0dd4..38ebdb2 100644
--- a/pom.xml
+++ b/pom.xml
@@ -16,13 +16,13 @@
     <name>beast-phylonco</name>
 
     <properties>
-        <!-- https://maven.apache.org/maven-ci-friendly.html -->
+        <lphy.vision>1.6.0-SNAPSHOT</lphy.vision>
+        <lphybeast.vision>1.2.0-SNAPSHOT</lphybeast.vision>
+        <!-- project.version https://maven.apache.org/maven-ci-friendly.html -->
         <revision>1.2.0-SNAPSHOT</revision>
         <maven.compiler.source>17</maven.compiler.source>
         <maven.compiler.target>17</maven.compiler.target>
         <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
-
-<!--        <lphyVersion>1.6.0-SNAPSHOT</lphyVersion>-->
     </properties>
 
     <modules>