Fix #1298: Clustering fisher test crash #204
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| name: Snapshot test | |
| on: | |
| pull_request: | |
| workflow_dispatch: | |
| env: | |
| DOCKER_TAG: bigomics/omicsplayground:latest | |
| jobs: | |
| unittest: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - | |
| name: Checkout | |
| uses: actions/checkout@v3 | |
| - | |
| name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - | |
| name: Shinytest docker | |
| id: test-snapshot | |
| run: | | |
| docker build --build-arg GITHUB_SHA=${{ github.sha }} --build-arg HEAD_REF=${{ github.head_ref }} -t ${{ env.DOCKER_TAG }} -f ./.github/workflows/snapshot-test-resources/Dockerfile . | |
| docker run --name run_tests bigomics/omicsplayground:latest | |
| docker cp run_tests:omicsplayground/tests . | |
| - | |
| name: Upload snapshots as artifact | |
| if: always() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: testthat-snapshots | |
| path: ./tests/* | |
| if-no-files-found: ignore | |
| - | |
| name: Configure Git | |
| if: always() | |
| run: | | |
| git config --local user.name "$GITHUB_ACTOR" | |
| git config --local user.email "[email protected]" | |
| # - | |
| # name: Setup upterm session | |
| # uses: lhotari/action-upterm@v1 | |
| # with: | |
| # ## limits ssh access and adds the ssh public key for the user which triggered the workflow | |
| # limit-access-to-actor: true | |
| # ## limits ssh access and adds the ssh public keys of the listed GitHub users | |
| # limit-access-to-users: ESCRI11 | |
| # wait-timeout-minutes: 120 | |
| - | |
| name: Commit and push snapshots | |
| if: always() | |
| run: | | |
| cd ${{ github.workspace }} | |
| if [[ `git status --porcelain` ]]; then | |
| git checkout -b "${GITHUB_HEAD_REF}" | |
| git add ./tests/* | |
| git fetch origin "${GITHUB_HEAD_REF}" | |
| git commit -m "Snapshot test failed: use snapshot_review('snapshot/') (GHA)" | |
| git push --force-with-lease origin "${GITHUB_HEAD_REF}" | |
| echo "snapshots pushed to repo" | |
| fi | |
| - | |
| name: Fail GHA if snapshot test failed | |
| if: always() | |
| run: | | |
| if [[ "${{ steps.test-snapshot.outputs.test_result }}" == "FALSE" ]]; then | |
| exit 1 | |
| fi |