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Can this package be applied to RNA-seq data? #26

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lincj1994 opened this issue Apr 6, 2022 · 1 comment
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Can this package be applied to RNA-seq data? #26

lincj1994 opened this issue Apr 6, 2022 · 1 comment

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@lincj1994
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Hi.
Can this package be applied to RNAseq Data, such as the ontypedx and gene70 functions? OR only Affymetrix data is allowed?
@ChristopherEeles
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Hi @lincj1994,

The gene signatures in this package were all derived from expression micro-arrays. While the functions will work for RNA-seq data, the validity of the results are a matter which requires applying your scientific judgment.

See #22 for a more detailed discussion.

Best,
Christopher Eeles
Software Developer
BHK Lab | PM-Research | UHN

@ChristopherEeles ChristopherEeles mentioned this issue May 30, 2022
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@ChristopherEeles @lincj1994