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Improve hairpin/palindrome removal in long-read assembly #55

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3 tasks done

kmnip opened this issue Aug 15, 2023 · 0 comments

Open

3 tasks done

Improve hairpin/palindrome removal in long-read assembly #55

kmnip opened this issue Aug 15, 2023 · 0 comments

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kmnip commented Aug 15, 2023

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version of RNA-Bloom with java -jar RNA-Bloom.jar -version
2.0.1
version of java with java -version
20
exact command used to run RNA-Bloom
rnabloom -long reads.fastq.gz

Currently, hairpins are still kept if there are read support. The default behavior needs to be more aggressive.

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kmnip added the enhancement label

kmnip self-assigned this

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