-
Notifications
You must be signed in to change notification settings - Fork 8
/
Copy pathupdate_grid.cc
1226 lines (1079 loc) · 55.4 KB
/
update_grid.cc
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
#include "update_grid.h"
#include <mpi.h>
#include <algorithm>
#include <cmath>
#include <cstddef>
#include <cstdio>
#include <cstdlib>
#include <ctime>
#include <vector>
#include "artisoptions.h"
#include "atomic.h"
#include "constants.h"
#include "decay.h"
#include "globals.h"
#include "grid.h"
#include "kpkt.h"
#include "ltepop.h"
#include "nltepop.h"
#include "nonthermal.h"
#include "radfield.h"
#include "ratecoeff.h"
#include "rpkt.h"
#include "sn3d.h"
#include "stats.h"
#include "thermalbalance.h"
#include "vpkt.h"
namespace {
std::vector<HeatingCoolingRates> heatingcoolingrates_thisrankcells;
void write_to_estimators_file(FILE *estimators_file, const int nonemptymgi, const int timestep, const int titer,
const HeatingCoolingRates &heatingcoolingrates) {
// return; disable for better performance (if estimators files are not needed)
const int mgi = grid::get_mgi_of_nonemptymgi(nonemptymgi);
const auto sys_time_start_write_estimators = std::time(nullptr);
printout("writing to estimators file timestep %d cell %d...\n", timestep, mgi);
const auto T_e = grid::get_Te(nonemptymgi);
const auto nne = grid::get_nne(nonemptymgi);
const auto Y_e = grid::get_electronfrac(nonemptymgi);
// fprintf(estimators_file,"%d %g %g %g %g %d
// ",n,get_TR(n),grid::get_Te(n),get_W(n),get_TJ(n),grid::modelgrid[n].thick); fprintf(estimators_file,"%d %g %g %g
// %g %g ",n,get_TR(n),grid::get_Te(n),get_W(n),get_TJ(n),grey_optical_depth);
fprintf(estimators_file,
"timestep %d modelgridindex %d titeration %d TR %g Te %g W %g TJ %g grey_depth %g thick %d nne %g Ye %g "
"tdays %7.2f\n",
timestep, mgi, titer, grid::get_TR(nonemptymgi), T_e, grid::get_W(nonemptymgi), grid::get_TJ(nonemptymgi),
grid::modelgrid[nonemptymgi].grey_depth, grid::modelgrid[nonemptymgi].thick, nne, Y_e,
globals::timesteps[timestep].mid / DAY);
// fprintf(estimators_file,"%d %g %g %g %g %g %g %g
//",n,get_TR(n),grid::get_Te(n),get_W(n),get_TJ(n),grey_optical_depth,grey_optical_deptha,compton_optical_depth);
if (globals::total_nlte_levels > 0) {
nltepop_write_to_file(nonemptymgi, timestep);
}
for (int element = 0; element < get_nelements(); element++) {
if (grid::get_elem_abundance(nonemptymgi, element) <= 0.) { // skip elements with no abundance
continue;
}
fprintf(estimators_file, "populations Z=%2d", get_atomicnumber(element));
const int nions = get_nions(element);
if (nions > 0) {
// add spaces for missing lowest ion stages to match other elements
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
}
double elpop = 0.;
for (int ion = 0; ion < nions; ion++) {
elpop += get_nnion(nonemptymgi, element, ion);
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), get_nnion(nonemptymgi, element, ion));
}
if (nions == 0) {
elpop = grid::get_elem_numberdens(nonemptymgi, element);
}
fprintf(estimators_file, " SUM: %9.3e", elpop);
decay::fprint_nuc_abundances(estimators_file, nonemptymgi, globals::timesteps[timestep].mid, element);
if (nions == 0 || elpop <= 0.) {
// dummy element for nuclear abundances only
continue;
}
// const bool printdebug = false;
bool assume_lte = true;
// bool per_gmpop = true;
// const bool lower_superlevel_only = false;
// if (timestep % 10 == 0)
// {
// fprintf(estimators_file, "RRC_LTE_Nahar Z=%2d", get_atomicnumber(element));
// for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++)
// fprintf(estimators_file, " ");
// for (int ion = 0; ion < nions; ion++)
// {
// fprintf(estimators_file, " %d: %9.3e",
// get_ionstage(element, ion),
// calculate_ionrecombcoeff(-1, T_e, element, ion, assume_lte, false, printdebug,
// lower_superlevel_only, per_gmpop, false));
// }
// fprintf(estimators_file, "\n");
// }
// per_gmpop = false;
// fprintf(estimators_file, "AlphaLTE_R*nne Z=%2d", get_atomicnumber(element));
// for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++)
// fprintf(estimators_file, " ");
// for (int ion = 0; ion < nions; ion++)
// {
// fprintf(estimators_file, " %d: %9.3e",
// get_ionstage(element, ion),
// calculate_ionrecombcoeff(nonemptymgi, T_e, element, ion, assume_lte, false, printdebug,
// lower_superlevel_only, per_gmpop) * nne);
// }
// fprintf(estimators_file, "\n");
assume_lte = false;
if constexpr (TRACK_ION_STATS) {
fprintf(estimators_file, "MA_IN_RADEXC Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
double ma_el = 0.;
for (int ion = 0; ion < nions; ion++) {
const double ma_ion = get_ion_stats(nonemptymgi, element, ion, stats::ION_MACROATOM_ENERGYIN_RADEXC);
ma_el += ma_ion;
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), ma_ion);
}
fprintf(estimators_file, " SUM: %9.3e\n", ma_el);
fprintf(estimators_file, "MA_OUT_RADEEXC Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
ma_el = 0.;
for (int ion = 0; ion < nions; ion++) {
const double ma_ion = get_ion_stats(nonemptymgi, element, ion, stats::ION_MACROATOM_ENERGYOUT_RADDEEXC);
ma_el += ma_ion;
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), ma_ion);
}
fprintf(estimators_file, " SUM: %9.3e\n", ma_el);
fprintf(estimators_file, "MA_IN_COLEXC Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
ma_el = 0.;
for (int ion = 0; ion < nions; ion++) {
const double ma_ion = get_ion_stats(nonemptymgi, element, ion, stats::ION_MACROATOM_ENERGYIN_COLLEXC);
ma_el += ma_ion;
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), ma_ion);
}
fprintf(estimators_file, " SUM: %9.3e\n", ma_el);
fprintf(estimators_file, "MA_OUT_COLDEEXC Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
ma_el = 0.;
for (int ion = 0; ion < nions; ion++) {
const double ma_ion = get_ion_stats(nonemptymgi, element, ion, stats::ION_MACROATOM_ENERGYOUT_COLLDEEXC);
ma_el += ma_ion;
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), ma_ion);
}
fprintf(estimators_file, " SUM: %9.3e\n", ma_el);
fprintf(estimators_file, "MA_IN_PHOTOION Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
ma_el = 0.;
for (int ion = 0; ion < nions; ion++) {
const double ma_ion = get_ion_stats(nonemptymgi, element, ion, stats::ION_MACROATOM_ENERGYIN_PHOTOION);
ma_el += ma_ion;
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), ma_ion);
}
fprintf(estimators_file, " SUM: %9.3e\n", ma_el);
fprintf(estimators_file, "MA_OUT_RADRECOMB Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
ma_el = 0.;
for (int ion = 0; ion < nions; ion++) {
const double ma_ion = get_ion_stats(nonemptymgi, element, ion, stats::ION_MACROATOM_ENERGYOUT_RADRECOMB);
ma_el += ma_ion;
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), ma_ion);
}
fprintf(estimators_file, " SUM: %9.3e\n", ma_el);
fprintf(estimators_file, "MA_IN_COLION Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
ma_el = 0.;
for (int ion = 0; ion < nions; ion++) {
const double ma_ion = get_ion_stats(nonemptymgi, element, ion, stats::ION_MACROATOM_ENERGYIN_COLLION);
ma_el += ma_ion;
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), ma_ion);
}
fprintf(estimators_file, " SUM: %9.3e\n", ma_el);
fprintf(estimators_file, "MA_OUT_COLRECOMB Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
ma_el = 0.;
for (int ion = 0; ion < nions; ion++) {
const double ma_ion = get_ion_stats(nonemptymgi, element, ion, stats::ION_MACROATOM_ENERGYOUT_COLLRECOMB);
ma_el += ma_ion;
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), ma_ion);
}
fprintf(estimators_file, " SUM: %9.3e\n", ma_el);
fprintf(estimators_file, "MA_IN_NTCOLION Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
ma_el = 0.;
for (int ion = 0; ion < nions; ion++) {
const double ma_ion = get_ion_stats(nonemptymgi, element, ion, stats::ION_MACROATOM_ENERGYIN_NTCOLLION);
ma_el += ma_ion;
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), ma_ion);
}
fprintf(estimators_file, " SUM: %9.3e\n", ma_el);
fprintf(estimators_file, "MA_IN_TOTAL Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
ma_el = 0.;
for (int ion = 0; ion < nions; ion++) {
const double ma_in_ion = get_ion_stats(nonemptymgi, element, ion, stats::ION_MACROATOM_ENERGYIN_TOTAL);
ma_el += ma_in_ion;
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), ma_in_ion);
}
fprintf(estimators_file, " SUM: %9.3e\n", ma_el);
fprintf(estimators_file, "MA_OUT_TOTAL Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
ma_el = 0.;
for (int ion = 0; ion < nions; ion++) {
const double ma_ion = get_ion_stats(nonemptymgi, element, ion, stats::ION_MACROATOM_ENERGYOUT_TOTAL);
ma_el += ma_ion;
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), ma_ion);
}
fprintf(estimators_file, " SUM: %9.3e\n", ma_el);
fprintf(estimators_file, "MA_IN_INTERNAL Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
ma_el = 0.;
for (int ion = 0; ion < nions; ion++) {
const double ma_ion = get_ion_stats(nonemptymgi, element, ion, stats::ION_MACROATOM_ENERGYIN_INTERNAL);
ma_el += ma_ion;
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), ma_ion);
}
fprintf(estimators_file, " SUM: %9.3e\n", ma_el);
fprintf(estimators_file, "MA_OUT_INTERNAL Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
ma_el = 0.;
for (int ion = 0; ion < nions; ion++) {
const double ma_ion = get_ion_stats(nonemptymgi, element, ion, stats::ION_MACROATOM_ENERGYOUT_INTERNAL);
ma_el += ma_ion;
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), ma_ion);
}
fprintf(estimators_file, " SUM: %9.3e\n", ma_el);
}
// // spontaneous radiative recombination rate coefficient (may or may not include stim. recomb)
// fprintf(estimators_file, "AlphaR*nne Z=%2d", get_atomicnumber(element));
// for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++)
// fprintf(estimators_file, " ");
// for (int ion = 0; ion < nions; ion++)
// {
// const bool printdebug = false;
// // const bool printdebug = (get_atomicnumber(element) >= 26);
//
// fprintf(estimators_file, " %d: %9.3e",
// get_ionstage(element, ion),
// calculate_ionrecombcoeff(nonemptymgi, T_e, element, ion, assume_lte, false, printdebug,
// lower_superlevel_only, per_gmpop, false) * nne);
// }
// fprintf(estimators_file, "\n");
//
// if (timestep % 10 == 0)
// {
// fprintf(estimators_file, "AlphaR_toSL*nne Z=%2d", get_atomicnumber(element));
// for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++)
// fprintf(estimators_file, " ");
// for (int ion = 0; ion < nions; ion++)
// {
// const bool printdebug = false;
// // const bool printdebug = (get_atomicnumber(element) >= 26);
//
// fprintf(estimators_file, " %d: %9.3e",
// get_ionstage(element, ion),
// calculate_ionrecombcoeff(nonemptymgi, T_e, element, ion, assume_lte, false, printdebug, true,
// per_gmpop, false) * nne);
// }
// fprintf(estimators_file, "\n");
// }
//
// if constexpr (TRACK_ION_STATS) {
// fprintf(estimators_file, "AlphaR_MC_MA*nne Z=%2d", get_atomicnumber(element));
// for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++)
// fprintf(estimators_file, " ");
// for (int ion = 0; ion < nions; ion++) {
// const double alpha_r_mc = get_ion_stats(nonemptymgi, element, ion, stats::ION_RADRECOMB_MACROATOM);
// fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), alpha_r_mc);
// }
// fprintf(estimators_file, "\n");
// }
//
// if constexpr (TRACK_ION_STATS) {
// fprintf(estimators_file, "AlphaR_MC_KPKT*nne Z=%2d", get_atomicnumber(element));
// for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++)
// fprintf(estimators_file, " ");
// for (int ion = 0; ion < nions; ion++) {
// const double alpha_r_mc = get_ion_stats(nonemptymgi, element, ion, stats::ION_RADRECOMB_KPKT);
// fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), alpha_r_mc);
// }
// fprintf(estimators_file, "\n");
// }
if constexpr (TRACK_ION_STATS) {
fprintf(estimators_file, "AlphaR_MC*nne Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
for (int ion = 0; ion < nions; ion++) {
const double alpha_r_mc = get_ion_stats(nonemptymgi, element, ion, stats::ION_RADRECOMB_MACROATOM) +
get_ion_stats(nonemptymgi, element, ion, stats::ION_RADRECOMB_KPKT);
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), alpha_r_mc);
}
fprintf(estimators_file, "\n");
fprintf(estimators_file, "BF_escfrac Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
for (int ion = 0; ion < nions; ion++) {
const double alpha_r_mc = get_ion_stats(nonemptymgi, element, ion, stats::ION_RADRECOMB_MACROATOM) +
get_ion_stats(nonemptymgi, element, ion, stats::ION_RADRECOMB_KPKT);
const double alpha_r_mc_abs = get_ion_stats(nonemptymgi, element, ion, stats::ION_RADRECOMB_ABSORBED);
fprintf(estimators_file, " %d: %9.3f", get_ionstage(element, ion), 1. - (alpha_r_mc_abs / alpha_r_mc));
}
fprintf(estimators_file, "\n");
fprintf(estimators_file, "BB_escfrac Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
for (int ion = 0; ion < nions; ion++) {
const double bb_emitted = get_ion_stats(nonemptymgi, element, ion, stats::ION_BOUNDBOUND_MACROATOM);
const double bb_abs = get_ion_stats(nonemptymgi, element, ion, stats::ION_BOUNDBOUND_ABSORBED);
fprintf(estimators_file, " %d: %9.3f", get_ionstage(element, ion), 1. - (bb_abs / bb_emitted));
}
fprintf(estimators_file, "\n");
}
// stimulated recombination rate coefficient
// fprintf(estimators_file, "Alpha_stim*nne Z=%2d", get_atomicnumber(element));
// for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++)
// fprintf(estimators_file, " ");
// for (int ion = 0; ion < nions; ion++)
// {
// // const bool printdebug = false;
// const bool printdebug = (get_atomicnumber(element) >= 26);
//
// fprintf(estimators_file, " %d: %9.3e",
// get_ionstage(element, ion),
// calculate_ionrecombcoeff(nonemptymgi, T_e, element, ion, assume_lte, false, printdebug,
// lower_superlevel_only, per_gmpop, true) * nne);
// }
// fprintf(estimators_file, "\n");
// thermal collisional recombination rate coefficient
// fprintf(estimators_file, "Alpha_C*nne Z=%2d", get_atomicnumber(element));
// for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++)
// fprintf(estimators_file, " ");
// for (int ion = 0; ion < nions; ion++)
// {
// fprintf(estimators_file, " %d: %9.3e",
// get_ionstage(element, ion),
// calculate_ionrecombcoeff(nonemptymgi, T_e, element, ion, assume_lte, true, printdebug,
// lower_superlevel_only, per_gmpop) * nne);
// }
// fprintf(estimators_file, "\n");
// {
// fprintf(estimators_file, "gamma_R Z=%2d", get_atomicnumber(element));
// for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++)
// fprintf(estimators_file, " ");
// for (int ion = 0; ion < nions - 1; ion++)
// {
// // const bool printdebug_gammar = (get_atomicnumber(element) == 26 && get_ionstage(element, ion) == 2);
// const bool printdebug_gammar = false;
// fprintf(estimators_file, " %d: %9.3e",
// get_ionstage(element, ion),
// calculate_iongamma_per_ionpop(nonemptymgi, T_e, element, ion, assume_lte, false, printdebug_gammar,
// false, false));
// }
// fprintf(estimators_file, "\n");
// }
if (DETAILED_BF_ESTIMATORS_ON) {
fprintf(estimators_file, "gamma_R_integral Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
for (int ion = 0; ion < nions - 1; ion++) {
// const bool printdebug_gammar = (get_atomicnumber(element) == 26 && get_ionstage(element, ion) == 2);
const bool printdebug_gammar = false;
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion),
calculate_iongamma_per_ionpop(nonemptymgi, T_e, element, ion, assume_lte, false, printdebug_gammar,
false, true));
}
fprintf(estimators_file, "\n");
}
if (DETAILED_BF_ESTIMATORS_ON) {
fprintf(estimators_file, "gamma_R_bfest Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
for (int ion = 0; ion < nions - 1; ion++) {
// const bool printdebug_gammar = ((get_atomicnumber(element) == 26 || get_atomicnumber(element) == 28) &&
// get_ionstage(element, ion) >= 2); const bool printdebug_gammar = (get_atomicnumber(element) >= 26);
const bool printdebug_gammar = false;
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion),
calculate_iongamma_per_ionpop(nonemptymgi, T_e, element, ion, assume_lte, false, printdebug_gammar,
true, false));
}
fprintf(estimators_file, "\n");
}
if constexpr (TRACK_ION_STATS) {
fprintf(estimators_file, "gamma_R_MC Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
for (int ion = 0; ion < nions - 1; ion++) {
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion),
get_ion_stats(nonemptymgi, element, ion, stats::ION_PHOTOION));
}
fprintf(estimators_file, "\n");
}
if constexpr (TRACK_ION_STATS) {
fprintf(estimators_file, "gamma_R_MC_BF Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
for (int ion = 0; ion < nions - 1; ion++) {
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion),
get_ion_stats(nonemptymgi, element, ion, stats::ION_PHOTOION_FROMBOUNDFREE));
}
fprintf(estimators_file, "\n");
}
// fprintf(estimators_file, "gamma_R_MC_BFsameZ Z=%2d", get_atomicnumber(element));
// for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++)
// fprintf(estimators_file, " ");
// for (int ion = 0; ion < nions; ion++)
// {
// fprintf(estimators_file, " %d: %9.3e",
// get_ionstage(element, ion),
// get_ion_stats(nonemptymgi, element, ion, stats::ION_PHOTOION_FROMBFSAMEELEMENT]);
// }
// fprintf(estimators_file, "\n");
if constexpr (TRACK_ION_STATS) {
fprintf(estimators_file, "gamma_R_MC_BF_i+1 Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
for (int ion = 0; ion < nions - 1; ion++) {
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion),
get_ion_stats(nonemptymgi, element, ion, stats::ION_PHOTOION_FROMBFIONPLUSONE));
}
fprintf(estimators_file, "\n");
}
if constexpr (TRACK_ION_STATS) {
fprintf(estimators_file, "gamma_R_MC_BF_i+2 Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
for (int ion = 0; ion < nions - 1; ion++) {
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion),
get_ion_stats(nonemptymgi, element, ion, stats::ION_PHOTOION_FROMBFIONPLUSTWO));
}
fprintf(estimators_file, "\n");
}
if constexpr (TRACK_ION_STATS) {
fprintf(estimators_file, "gamma_R_MC_BF_i+3 Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
for (int ion = 0; ion < nions - 1; ion++) {
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion),
get_ion_stats(nonemptymgi, element, ion, stats::ION_PHOTOION_FROMBFIONPLUSTHREE));
}
fprintf(estimators_file, "\n");
}
if constexpr (TRACK_ION_STATS) {
fprintf(estimators_file, "gamma_R_MC_BFtoSL Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
for (int ion = 0; ion < nions - 1; ion++) {
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion),
get_ion_stats(nonemptymgi, element, ion, stats::ION_PHOTOION_FROMBFLOWERSUPERLEVEL));
}
fprintf(estimators_file, "\n");
}
if constexpr (TRACK_ION_STATS) {
fprintf(estimators_file, "gamma_R_MC_BB Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
for (int ion = 0; ion < nions - 1; ion++) {
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion),
get_ion_stats(nonemptymgi, element, ion, stats::ION_PHOTOION_FROMBOUNDBOUND));
}
fprintf(estimators_file, "\n");
}
if constexpr (TRACK_ION_STATS) {
fprintf(estimators_file, "gamma_R_MC_BB_i+1 Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
for (int ion = 0; ion < nions - 1; ion++) {
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion),
get_ion_stats(nonemptymgi, element, ion, stats::ION_PHOTOION_FROMBOUNDBOUNDIONPLUSONE));
}
fprintf(estimators_file, "\n");
}
if constexpr (TRACK_ION_STATS) {
fprintf(estimators_file, "gamma_R_MC_BB_i+2 Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
for (int ion = 0; ion < nions - 1; ion++) {
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion),
get_ion_stats(nonemptymgi, element, ion, stats::ION_PHOTOION_FROMBOUNDBOUNDIONPLUSTWO));
}
fprintf(estimators_file, "\n");
}
if constexpr (TRACK_ION_STATS) {
fprintf(estimators_file, "gamma_R_MC_BB_i+3 Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
for (int ion = 0; ion < nions - 1; ion++) {
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion),
get_ion_stats(nonemptymgi, element, ion, stats::ION_PHOTOION_FROMBOUNDBOUNDIONPLUSTHREE));
}
fprintf(estimators_file, "\n");
}
// fprintf(estimators_file, "gamma_C Z=%2d", get_atomicnumber(element));
// for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++)
// fprintf(estimators_file, " ");
// for (int ion = 0; ion < nions - 1; ion++)
// {
// fprintf(estimators_file, " %d: %9.3e",
// get_ionstage(element, ion),
// calculate_iongamma_per_ionpop(nonemptymgi, T_e, element, ion, assume_lte, true,
// printdebug));
// }
// fprintf(estimators_file, "\n");
if (NT_ON) {
fprintf(estimators_file, "gamma_NT Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
for (int ion = 0; ion < nions - 1; ion++) {
const double Y_nt = nonthermal::nt_ionization_ratecoeff(nonemptymgi, element, ion);
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion), Y_nt);
}
fprintf(estimators_file, "\n");
if constexpr (TRACK_ION_STATS) {
fprintf(estimators_file, "gamma_NT_MC Z=%2d", get_atomicnumber(element));
for (int ionstage = 1; ionstage < get_ionstage(element, 0); ionstage++) {
fprintf(estimators_file, " ");
}
for (int ion = 0; ion < nions - 1; ion++) {
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion),
get_ion_stats(nonemptymgi, element, ion, stats::ION_NTION));
}
fprintf(estimators_file, "\n");
}
}
if (USE_LUT_PHOTOION && globals::nbfcontinua_ground > 0) {
fprintf(estimators_file, "corrphotoionrenorm Z=%2d", get_atomicnumber(element));
for (int ion = 0; ion < nions - 1; ion++) {
const int groundcontindex = globals::elements[element].ions[ion].groundcontindex;
if (groundcontindex >= 0) {
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion),
globals::corrphotoionrenorm[get_ionestimindex_nonemptymgi(nonemptymgi, element, ion)]);
}
}
fprintf(estimators_file, "\n");
fprintf(estimators_file, "gammaestimator Z=%2d", get_atomicnumber(element));
for (int ion = 0; ion < nions - 1; ion++) {
const int groundcontindex = globals::elements[element].ions[ion].groundcontindex;
if (groundcontindex >= 0) {
fprintf(estimators_file, " %d: %9.3e", get_ionstage(element, ion),
globals::gammaestimator[get_ionestimindex_nonemptymgi(nonemptymgi, element, ion)]);
}
}
fprintf(estimators_file, "\n");
}
}
// power densities in erg / s / cm^3
// ana means analytical at t_mid, i.e. the rates calculated from the nuclear abundances and decay data, not from
// Monte Carlo
fprintf(estimators_file, "emission_ana: gamma %11.5e positron %11.5e electron %11.5e alpha %11.5e\n",
heatingcoolingrates.eps_gamma_ana, heatingcoolingrates.eps_positron_ana, heatingcoolingrates.eps_electron_ana,
heatingcoolingrates.eps_alpha_ana);
fprintf(estimators_file, "deposition: gamma %11.5e positron %11.5e electron %11.5e alpha %11.5e\n",
heatingcoolingrates.dep_gamma, heatingcoolingrates.dep_positron, heatingcoolingrates.dep_electron,
heatingcoolingrates.dep_alpha);
fprintf(estimators_file, "heating: ff %11.5e bf %11.5e coll %11.5e dep %11.5e heating_dep/total_dep %.3f\n",
heatingcoolingrates.heating_ff, heatingcoolingrates.heating_bf, heatingcoolingrates.heating_collisional,
heatingcoolingrates.heating_dep, heatingcoolingrates.dep_frac_heating);
fprintf(estimators_file, "cooling: ff %11.5e fb %11.5e coll %11.5e adiabatic %11.5e\n",
heatingcoolingrates.cooling_ff, heatingcoolingrates.cooling_fb, heatingcoolingrates.cooling_collisional,
heatingcoolingrates.cooling_adiabatic);
fprintf(estimators_file, "\n");
fflush(estimators_file);
const auto write_estim_duration = std::time(nullptr) - sys_time_start_write_estimators;
if (write_estim_duration >= 1) {
printout("writing estimators for timestep %d cell %d took %ld seconds\n", timestep, mgi, write_estim_duration);
}
}
void solve_Te_nltepops(const int nonemptymgi, const int nts, const int nts_prev,
HeatingCoolingRates &heatingcoolingrates)
// nts is the timestep number
{
const int mgi = grid::get_mgi_of_nonemptymgi(nonemptymgi);
// bfheating coefficients are needed for the T_e solver, but
// they only depend on the radiation field, which is fixed during the iterations below
printout("calculate_bfheatingcoeffs for timestep %d cell %d...", nts, mgi);
const auto sys_time_start_calculate_bfheatingcoeffs = std::time(nullptr);
thread_local static auto bfheatingcoeffs = std::vector<double>(get_includedlevels());
calculate_bfheatingcoeffs(nonemptymgi, bfheatingcoeffs);
printout("took %ld seconds\n", std::time(nullptr) - sys_time_start_calculate_bfheatingcoeffs);
const double convergence_tolerance = 0.04;
for (int nlte_iter = 0; nlte_iter <= NLTEITER; nlte_iter++) {
const auto sys_time_start_spencerfano = std::time(nullptr);
if (NT_ON && NT_SOLVE_SPENCERFANO) {
// SF solution depends on the ionization balance, and weakly on nne
nonthermal::solve_spencerfano(nonemptymgi, nts, nlte_iter);
}
const int duration_solve_spencerfano = std::time(nullptr) - sys_time_start_spencerfano;
const auto sys_time_start_partfuncs_or_gamma = std::time(nullptr);
for (int element = 0; element < get_nelements(); element++) {
if (!elem_has_nlte_levels(element)) {
calculate_cellpartfuncts(nonemptymgi, element);
}
}
const int duration_solve_partfuncs_or_gamma = std::time(nullptr) - sys_time_start_partfuncs_or_gamma;
const double prev_T_e = grid::get_Te(nonemptymgi);
const auto sys_time_start_Te = std::time(nullptr);
// Find T_e as solution for thermal balance
call_T_e_finder(nonemptymgi, globals::timesteps[nts_prev].mid, MINTEMP, MAXTEMP, heatingcoolingrates,
bfheatingcoeffs);
const int duration_solve_T_e = std::time(nullptr) - sys_time_start_Te;
if (globals::total_nlte_levels == 0) {
const auto sys_time_start_pops = std::time(nullptr);
calculate_ion_balance_nne(nonemptymgi);
const int duration_solve_pops = std::time(nullptr) - sys_time_start_pops;
printout(
"Grid solver cell %d timestep %d: time spent on: Spencer-Fano %ds, partfuncs/gamma "
"%ds, T_e %ds, populations %ds\n",
mgi, nts, duration_solve_spencerfano, duration_solve_partfuncs_or_gamma, duration_solve_T_e,
duration_solve_pops);
break; // no iteration is needed without nlte pops
}
const double fracdiff_T_e = fabs((grid::get_Te(nonemptymgi) / prev_T_e) - 1);
const auto sys_time_start_nltepops = std::time(nullptr);
// fractional difference between previous and current iteration's (nne or max(ground state
// population change))
double fracdiff_nne = 0.;
for (int element = 0; element < get_nelements(); element++) {
if (get_nions(element) > 0 && elem_has_nlte_levels(element)) {
solve_nlte_pops_element(element, nonemptymgi, nts, nlte_iter);
calculate_cellpartfuncts(nonemptymgi, element);
}
}
const int duration_solve_nltepops = std::time(nullptr) - sys_time_start_nltepops;
const double nne_prev = grid::get_nne(nonemptymgi);
calculate_ion_balance_nne(nonemptymgi); // sets nne
fracdiff_nne = fabs((grid::get_nne(nonemptymgi) / nne_prev) - 1);
printout(
"NLTE solver cell %d timestep %d iteration %d: time spent on: Spencer-Fano %ds, T_e "
"%ds, NLTE populations %ds\n",
mgi, nts, nlte_iter, duration_solve_spencerfano, duration_solve_T_e, duration_solve_nltepops);
printout(
"NLTE (Spencer-Fano/Te/pops) solver cell %d timestep %d iteration %d: prev_iter nne "
"%g, new nne is %g, fracdiff %g, prev T_e %g new T_e %g fracdiff %g\n",
mgi, nts, nlte_iter, nne_prev, grid::get_nne(nonemptymgi), fracdiff_nne, prev_T_e, grid::get_Te(nonemptymgi),
fracdiff_T_e);
if (fracdiff_nne <= convergence_tolerance && fracdiff_T_e <= convergence_tolerance) {
printout(
"NLTE (Spencer-Fano/Te/pops) solver nne converged to tolerance %g <= %g and T_e to "
"tolerance %g <= %g after %d iterations.\n",
fracdiff_nne, convergence_tolerance, fracdiff_T_e, convergence_tolerance, nlte_iter + 1);
break;
}
if (nlte_iter == NLTEITER) {
printout(
"WARNING: NLTE solver failed to converge after %d iterations. Keeping solution from "
"last iteration\n",
nlte_iter + 1);
}
}
}
void update_gamma_corrphotoionrenorm_bfheating_estimators(const int nonemptymgi, const double estimator_normfactor) {
if constexpr (USE_LUT_PHOTOION) {
for (int element = 0; element < get_nelements(); element++) {
const int nions = get_nions(element);
for (int ion = 0; ion < nions - 1; ion++) {
const int groundcontindex = globals::elements[element].ions[ion].groundcontindex;
if (groundcontindex < 0) {
continue;
}
const int ionestimindex = (nonemptymgi * globals::nbfcontinua_ground) + groundcontindex;
globals::gammaestimator[ionestimindex] *= estimator_normfactor / H;
#ifdef DO_TITER
if (globals::gammaestimator_save[ionestimindex] >= 0) {
globals::gammaestimator[ionestimindex] =
(globals::gammaestimator[ionestimindex] + globals::gammaestimator_save[ionestimindex]) / 2;
}
globals::gammaestimator_save[ionestimindex] = globals::gammaestimator[ionestimindex];
#endif
globals::corrphotoionrenorm[ionestimindex] =
globals::gammaestimator[ionestimindex] / get_corrphotoioncoeff_ana(element, ion, 0, 0, nonemptymgi);
if (!std::isfinite(globals::corrphotoionrenorm[ionestimindex])) {
const auto mgi = grid::get_mgi_of_nonemptymgi(nonemptymgi);
printout(
"[fatal] about to set corrphotoionrenorm = NaN = gammaestimator / "
"get_corrphotoioncoeff_ana(%d,%d,%d,%d,%d)=%g/%g",
element, ion, 0, 0, mgi, globals::gammaestimator[ionestimindex],
get_corrphotoioncoeff_ana(element, ion, 0, 0, nonemptymgi));
std::abort();
}
}
// 2012-01-11. These loops should terminate here to precalculate *ALL* corrphotoionrenorm
// values so that the values are known when required by the call to get_corrphotoioncoeff in
// the following loops. Otherwise get_corrphotoioncoeff tries to renormalize by the closest
// corrphotoionrenorm in frequency space which can lead to zero contributions to the total
// photoionsation rate!
}
}
for (int element = 0; element < get_nelements(); element++) {
const int nions = get_nions(element);
for (int ion = 0; ion < nions - 1; ion++) {
// Reuse the gammaestimator array as temporary storage of the Gamma values during
// the remaining part of the update_grid phase. Afterwards it is reset to record
// the next timesteps gamma estimators.
const int groundcontindex = globals::elements[element].ions[ion].groundcontindex;
if (groundcontindex < 0) {
continue;
}
const int ionestimindex = (nonemptymgi * globals::nbfcontinua_ground) + groundcontindex;
if (!elem_has_nlte_levels(element)) {
globals::gammaestimator[ionestimindex] = calculate_iongamma_per_gspop(nonemptymgi, element, ion);
}
if constexpr (USE_LUT_BFHEATING) {
globals::bfheatingestimator[ionestimindex] *= estimator_normfactor;
#ifdef DO_TITER
if (bfheatingestimator_save[ionestimindex] >= 0) {
globals::bfheatingestimator[ionestimindex] =
(globals::bfheatingestimator[ionestimindex] + bfheatingestimator_save[ionestimindex]) / 2;
}
bfheatingestimator_save[ionestimindex] = globals::bfheatingestimator[ionestimindex];
#endif
// Now convert bfheatingestimator into the bfheating renormalisation coefficient used in
// get_bfheating in the remaining part of update_grid. Later on it's reset and new
// contributions are added up.
const double bfheatingcoeff_ana =
get_bfheatingcoeff_ana(element, ion, 0, 0, grid::get_TR(nonemptymgi), grid::get_W(nonemptymgi));
globals::bfheatingestimator[ionestimindex] = globals::bfheatingestimator[ionestimindex] / bfheatingcoeff_ana;
if (!std::isfinite(globals::bfheatingestimator[ionestimindex])) {
const auto mgi = grid::get_mgi_of_nonemptymgi(nonemptymgi);
printout(
"[fatal] about to set bfheatingestimator = NaN = bfheatingestimator / "
"get_bfheatingcoeff_ana(%d,%d,%d,%d,%d)=%g/%g",
element, ion, 0, 0, mgi, globals::bfheatingestimator[ionestimindex], bfheatingcoeff_ana);
std::abort();
}
}
}
}
}
#ifdef DO_TITER
static void titer_average_estimators(const int nonemptymgi) {
if (globals::ffheatingestimator_save[nonemptymgi] >= 0) {
globals::ffheatingestimator[nonemptymgi] =
(globals::ffheatingestimator[nonemptymgi] + globals::ffheatingestimator_save[nonemptymgi]) / 2;
}
globals::ffheatingestimator_save[nonemptymgi] = globals::ffheatingestimator[nonemptymgi];
if constexpr (!DIRECT_COL_HEAT) {
if (globals::colheatingestimator_save[nonemptymgi] >= 0) {
globals::colheatingestimator[nonemptymgi] =
(globals::colheatingestimator[nonemptymgi] + globals::colheatingestimator_save[nonemptymgi]) / 2;
}
globals::colheatingestimator_save.at(nonemptymgi) = globals::colheatingestimator.at(nonemptymgi);
}
}
#endif
void update_grid_cell(const int nonemptymgi, const int nts, const int nts_prev, const int titer, const double tratmid,
const double deltat, HeatingCoolingRates &heatingcoolingrates) {
const int mgi = grid::get_mgi_of_nonemptymgi(nonemptymgi);
const double deltaV =
grid::get_modelcell_assocvolume_tmin(mgi) * pow(globals::timesteps[nts_prev].mid / globals::tmin, 3);
const auto sys_time_start_update_cell = std::time(nullptr);
printout("update_grid_cell: working on cell %d before timestep %d titeration %d...\n", mgi, nts, titer);
// Update current mass density of cell
grid::set_rho(nonemptymgi, grid::get_rho_tmin(mgi) / pow(tratmid, 3));
// Update elemental abundances with radioactive decays
decay::update_abundances(nonemptymgi, nts, globals::timesteps[nts].mid);
nonthermal::calculate_deposition_rate_density(nonemptymgi, nts, heatingcoolingrates);
if (globals::opacity_case == 6) {
grid::calculate_kappagrey();
}
const double estimator_normfactor = 1 / deltaV / deltat / globals::nprocs;
const double estimator_normfactor_over4pi = ONEOVER4PI * estimator_normfactor;
if (globals::opacity_case < 4) {
// various forms of grey opacity
grid::modelgrid[nonemptymgi].thick = 1;
if (globals::opacity_case == 3) {
if (grid::get_rho(nonemptymgi) > globals::rho_crit) {
grid::set_kappagrey(nonemptymgi, globals::opcase3_normal * (0.9 * grid::get_ffegrp(mgi) + 0.1) *
globals::rho_crit / grid::get_rho(nonemptymgi));
} else {
grid::set_kappagrey(nonemptymgi, globals::opcase3_normal * (0.9 * grid::get_ffegrp(mgi) + 0.1));
}
}
}
if (nts == globals::timestep_initial && titer == 0) {
// For the initial timestep, temperatures have already been assigned
// either by trapped energy release calculation, or reading from gridsave file
if (USE_LUT_PHOTOION && !globals::simulation_continued_from_saved) {
// Determine renormalisation factor for corrected photoionization cross-sections
std::fill_n(globals::corrphotoionrenorm.data() + (nonemptymgi * globals::nbfcontinua_ground),
globals::nbfcontinua_ground, 1.);
}
// W == 1 indicates that this modelgrid cell was treated grey in the
// last timestep. Therefore it has no valid Gamma estimators and must
// be treated in LTE at restart.
if (grid::modelgrid[nonemptymgi].thick != 1 && grid::get_W(nonemptymgi) == 1) {
printout(
"force modelgrid cell %d to grey/LTE thick = 1 for update grid since existing W == 1. (will not have "
"gamma estimators)\n",
mgi);
grid::modelgrid[nonemptymgi].thick = 1;
}
printout("lte_iteration %d\n", globals::lte_iteration ? 1 : 0);
printout("mgi %d modelgrid.thick: %d (during grid update)\n", mgi, grid::modelgrid[nonemptymgi].thick);
for (int element = 0; element < get_nelements(); element++) {
calculate_cellpartfuncts(nonemptymgi, element);
}
if (!globals::simulation_continued_from_saved) {
calculate_ion_balance_nne(nonemptymgi);
}
} else {
// For all other timesteps temperature corrections have to be applied
// we have to calculate the electron density
// and all the level populations
// Normalise estimators and make sure that they are finite.
// Then update T_R and W using the estimators.
// (This could in principle also be done for empty cells)
const auto sys_time_start_temperature_corrections = std::time(nullptr);
radfield::normalise_J(nonemptymgi, estimator_normfactor_over4pi); // this applies normalisation to the fullspec J
// this stores the factor that will be applied later for the J bins but not fullspec J
radfield::set_J_normfactor(nonemptymgi, estimator_normfactor_over4pi);
#ifdef DO_TITER
radfield::titer_J(nonemptymgi);
#endif
if constexpr (TRACK_ION_STATS) {
stats::normalise_ion_estimators(nonemptymgi, deltat, deltaV);
}
// lte_iteration really means either ts 0 or nts < globals::num_lte_timesteps
if (globals::lte_iteration || grid::modelgrid[nonemptymgi].thick == 1) {
// LTE mode or grey mode (where temperature doesn't matter but is calculated anyway)
const double T_J = radfield::get_T_J_from_J(nonemptymgi);
grid::set_TR(nonemptymgi, T_J);
grid::set_Te(nonemptymgi, T_J);
grid::set_TJ(nonemptymgi, T_J);
grid::set_W(nonemptymgi, 1);
if constexpr (USE_LUT_PHOTOION) {
std::fill_n(globals::corrphotoionrenorm.data() + (nonemptymgi * globals::nbfcontinua_ground),
globals::nbfcontinua_ground, 1.);
}
for (int element = 0; element < get_nelements(); element++) {
calculate_cellpartfuncts(nonemptymgi, element);
}
calculate_ion_balance_nne(nonemptymgi);
} else {
// not lte_iteration and not a thick cell
// non-pure-LTE timesteps with T_e from heating/cooling
radfield::normalise_nuJ(nonemptymgi, estimator_normfactor_over4pi);
globals::ffheatingestimator[nonemptymgi] *= estimator_normfactor;
if constexpr (!DIRECT_COL_HEAT) {
globals::colheatingestimator[nonemptymgi] *= estimator_normfactor;
}
#ifdef DO_TITER
radfield::titer_nuJ(nonemptymgi);
titer_average_estimators(nonemptymgi);
#endif
update_gamma_corrphotoionrenorm_bfheating_estimators(nonemptymgi, estimator_normfactor);
// Get radiation field parameters (T_J, T_R, W, and bins if enabled) out of the
// full-spectrum and binned J and nuJ estimators
radfield::fit_parameters(nonemptymgi, nts);