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FreeSurfer longitudinal requires a long_id column #1414

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MatthieuJoulot opened this issue Jan 14, 2025 · 0 comments
Open

FreeSurfer longitudinal requires a long_id column #1414

MatthieuJoulot opened this issue Jan 14, 2025 · 0 comments
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@MatthieuJoulot
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Hi dear Clinica devs!

I am working up to use t1-freesurfer-longitudinal. I am encountering a small issue (which I have solved on my side). When using t1-freesurfer-longitudinal with the -tsv option the tsp requires a long_id column. This information is not provided in the documentation, and providing a specific template, meaning a subject has more than one template is more advanced, and should probably not be the default behavior.

I guess there is 2 things to do:

  1. Remove the long_id column from the mandatory columns from the -tsvoption and get a flag (I guess) to tell the program when it should be looking for a long_id column in the tsv.
  2. Write it in the documentation.

Have a good day,
Matthieu

@MatthieuJoulot MatthieuJoulot added the bug Something isn't working label Jan 14, 2025
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