Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[CONV] ADNI-TO-BIDS/IXI-TO-BIDS : Standardization of the -sl option to -tsv #1259

Open
AliceJoubert opened this issue Aug 20, 2024 · 0 comments
Assignees
Labels
converter enhancement New feature or request

Comments

@AliceJoubert
Copy link
Contributor

In an effort to harmonize the options of the command lines available in clinica, the option --subjects-lists (-sl) for the converter adni-to-bids should be progressively replaced by the option -tsv which is commonly used in pipelines. The modifications should :

  • add -tsv option for converters
  • detect format (.txt or .tsv) :
    • if .txt : indicate coming-up deprecation of the -sl option and ask the user to change format + add column name ; still take that format for now
    • if .tsv : take the format
  • add unit test if not present
  • indicate change in docs + give example with right format
  • should be done for both ADNI and IXI converters
@AliceJoubert AliceJoubert added enhancement New feature or request converter labels Aug 20, 2024
@AliceJoubert AliceJoubert self-assigned this Aug 20, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
converter enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant