From cb0e0b42266bbe2c364703098d2f56dd6fdd2543 Mon Sep 17 00:00:00 2001
From: aprilnovak <novak@berkeley.edu>
Date: Thu, 27 Jul 2023 14:58:46 -0500
Subject: [PATCH] Add Griffin super app. Refs #753

---
 Makefile               | 25 +++++++++++++++++++++++++
 config/check_deps.mk   |  1 +
 src/base/CardinalApp.C | 17 +++++++++++++++++
 3 files changed, 43 insertions(+)

diff --git a/Makefile b/Makefile
index 7576d9bfe..d2689cce2 100644
--- a/Makefile
+++ b/Makefile
@@ -9,6 +9,7 @@
 # * OPENMC_DIR       : Top-level OpenMC dir (default: $(CONTRIB_DIR)/openmc)
 # * DAGMC_DIR        : Top-level DagMC dir (default: $(CONTRIB_DIR)/DAGMC)
 # * MOAB_DIR         : Top-level Moab dir (default: $(CONTRIB_DIR)/moab)
+# * GRIFFIN_DIR      : Top-level Griffin dir (default: $(CONTRIB_DIR)/griffin)
 # * BISON_DIR        : Top-level Bison dir (default: $(CONTRIB_DIR)/bison)
 # * SAM_DIR          : Top-level SAM dir (default: $(CONTRIB_DIR)/SAM)
 # * SOCKEYE_DIR      : Top-level Sockeye dir (default: $(CONTRIB_DIR)/sockeye)
@@ -75,6 +76,7 @@ PETSC_DIR           ?= $(MOOSE_DIR)/petsc
 PETSC_ARCH          ?= arch-moose
 LIBMESH_DIR         ?= $(MOOSE_DIR)/libmesh/installed/
 CONTRIB_INSTALL_DIR ?= $(CARDINAL_DIR)/install
+GRIFFIN_DIR         ?= $(CONTRIB_DIR)/griffin
 BISON_DIR           ?= $(CONTRIB_DIR)/bison
 SAM_DIR             ?= $(CONTRIB_DIR)/SAM
 SOCKEYE_DIR         ?= $(CONTRIB_DIR)/sockeye
@@ -229,6 +231,29 @@ include $(FRAMEWORK_DIR)/moose.mk
 
 include $(MOOSE_DIR)/modules/modules.mk
 
+# Griffin submodule
+ifneq ($(GRIFFIN_CONTENT),)
+ libmesh_CXXFLAGS    += -DENABLE_GRIFFIN_COUPLING
+
+ APPLICATION_DIR    := $(GRIFFIN_DIR)/isoxml
+ APPLICATION_NAME   := isoxml
+ include            $(FRAMEWORK_DIR)/app.mk
+ #ADDITIONAL_DEPEND_LIBS += $(CURDIR)/isoxml/lib/libisoxml-$(METHOD).la
+
+ APPLICATION_DIR    := $(GRIFFIN_DIR)/xs_generation
+ APPLICATION_NAME   := mcc3
+ include            $(APPLICATION_DIR)/mcc3.dep
+ include            $(FRAMEWORK_DIR)/app.mk
+
+ APPLICATION_DIR    := $(GRIFFIN_DIR)/radiation_transport
+ APPLICATION_NAME   := radiation_transport
+ include            $(FRAMEWORK_DIR)/app.mk
+
+ APPLICATION_DIR     := $(GRIFFIN_DIR)
+ APPLICATION_NAME    := griffin
+ include             $(FRAMEWORK_DIR)/app.mk
+endif
+
 # Bison submodule
 ifneq ($(BISON_CONTENT),)
   libmesh_CXXFLAGS    += -DENABLE_BISON_COUPLING
diff --git a/config/check_deps.mk b/config/check_deps.mk
index 9986afe73..0400dde1c 100644
--- a/config/check_deps.mk
+++ b/config/check_deps.mk
@@ -9,6 +9,7 @@ NEKRS_CONTENT     := $(shell ls $(NEKRS_DIR) 2> /dev/null)
 OPENMC_CONTENT    := $(shell ls $(OPENMC_DIR) 2> /dev/null)
 DAGMC_CONTENT     := $(shell ls $(DAGMC_DIR) 2> /dev/null)
 MOAB_CONTENT      := $(shell ls $(MOAB_DIR) 2> /dev/null)
+GRIFFIN_CONTENT   := $(shell ls $(GRIFFIN_DIR) 2> /dev/null)
 BISON_CONTENT     := $(shell ls $(BISON_DIR) 2> /dev/null)
 SAM_CONTENT       := $(shell ls $(SAM_DIR) 2> /dev/null)
 SOCKEYE_CONTENT   := $(shell ls $(SOCKEYE_DIR) 2> /dev/null)
diff --git a/src/base/CardinalApp.C b/src/base/CardinalApp.C
index 1bad37fce..594a427b4 100644
--- a/src/base/CardinalApp.C
+++ b/src/base/CardinalApp.C
@@ -26,6 +26,11 @@
 #include "NekSyntax.h"
 #endif
 
+#ifdef ENABLE_GRIFFIN_COUPLING
+#include "GriffinApp.h"
+#include "RadiationTransportApp.h"
+#endif
+
 #ifdef ENABLE_BISON_COUPLING
 #include "BisonApp.h"
 #endif
@@ -77,6 +82,13 @@ CardinalApp::CardinalApp(InputParameters parameters) : MooseApp(parameters)
   ModulesApp::registerAllObjects<CardinalApp>(_factory, _action_factory, _syntax);
   CardinalApp::registerAll(_factory, _action_factory, _syntax);
 
+#ifdef ENABLE_GRIFFIN_COUPLING
+  GriffinApp::registerApps();
+  GriffinApp::registerAll(_factory, _action_factory, _syntax);
+  RadiationTransportApp::registerApps();
+  RadiationTransportApp::registerAll(_factory, _action_factory, _syntax);
+#endif
+
 #ifdef ENABLE_BISON_COUPLING
   BisonApp::registerApps();
   BisonApp::registerAll(_factory, _action_factory, _syntax);
@@ -127,6 +139,11 @@ CardinalApp::registerApps()
 {
   registerApp(CardinalApp);
 
+#ifdef ENABLE_GRIFFIN_COUPLING
+  GriffinApp::registerApps();
+  RadiationTransportApp::registerApps();
+#endif
+
 #ifdef ENABLE_BISON_COUPLING
   BisonApp::registerApps();
 #endif