Merge pull request #1327 from MaximeBICMTL/add_eeg_chunker_to_linter

Add the EEG chunker to the linter configuration

Author: cmadjar

pyproject.toml

@@ -52,7 +52,6 @@ packages = [
 [tool.ruff]
 src = ["python"]
 include = ["python/**/*.py"]
-exclude = ["python/react-series-data-viewer"]
 line-length = 120
 preview = true
 

python/react-series-data-viewer/chunking.py

@@ -2,12 +2,12 @@
 import json
 import math
 import os
-from collections import OrderedDict
-import numpy as np
-from scipy import signal
 import sys
+from collections import OrderedDict
 
+import numpy as np
 from protocol_buffers import chunk_pb2 as chunk_pb
+from scipy import signal
 
 
 def pad_values(values, chunk_size):

python/react-series-data-viewer/edf_to_chunks.py

@@ -1,8 +1,11 @@
+#!/usr/bin/env python
+
 import argparse
+import sys
+
 import mne.io
 import mne.io.edf.edf as mne_edf
 from chunking import write_chunk_directory
-import sys
 
 
 def load_channels(exclude):
@@ -67,7 +70,7 @@ def load_channels(exclude):
             if len(stim_channel_idxs) == 1:
                 continue
 
-            print('Creating chunk for channel {} for {}'.format(i, path))
+            print(f'Creating chunk for channel {i} for {path}')
 
             # excluding channels in the loader reduce the time required to read the file
             # and avoid memory issues

python/react-series-data-viewer/eeglab_to_chunks.py

@@ -1,8 +1,11 @@
+#!/usr/bin/env python
+
 import argparse
+import sys
+
+import chunking
 import mne.io
 import mne.io.eeglab.eeglab as mne_eeglab
-import chunking
-import sys
 
 
 def load_channels(path):
@@ -42,7 +45,7 @@ def load_channels(path):
         if args.channel_count and args.channel_count < 0:
             sys.exit("Channel count must be a positive integer")
 
-        print('Creating chunks for {}'.format(path))
+        print(f'Creating chunks for {path}')
         chunking.write_chunk_directory(
             path=path,
             from_channel_index=args.channel_index,

python/react-series-data-viewer/pyproject.toml

@@ -0,0 +1,3 @@
+[tool.ruff]
+extend = "../../pyproject.toml"
+exclude = ["protocol_buffers"]