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Copy pathFluor_reducefull.m
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Fluor_reducefull.m
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function [ d ] = Fluor_reducefull( con, plotopt )
%Function to reduce data from Fluor-log 3 in Biophysics core
%Store all data in a d. data structure
%Averages spectra from repeat conditions
color = 'brkmgcybrkmgcybrkmgcybrkmgcybrkmgcybrkmgcy';
%Get File names for import
for j = 1:length(con)
%Group series by concentration values:
d.lipid_con(j) = con(j);
series_name = input(['Input series to be averaged for ' num2str(con(j)) ':'],'s');
for s = 1:length(series_name)
for r = 1:3
if r == 1
%Import Blank:
blank_name = strcat(series_name(s) , ' (0',num2str(r),')_Graph.dat');
blank = importdata(blank_name);
blank = blank.data;
blank_SR = blank(:,2);
else
%Import data and blank subtract
data_name = strcat(series_name(s) , ' (0',num2str(r),')_Graph.dat');
rawdata = importdata(data_name);
rawdata = rawdata.data;
d.wvl = rawdata(:,1);
rdata_SR = rawdata(:,2) - blank_SR;
if plotopt ==1
if r == 2
figure(1)
plot(d.wvl,rdata_SR,'b','LineWidth', 1.3);
title(['Series' series_name(s) ': ' num2str(con(j))]);
hold on;
elseif r==3
hold on;
plot(d.wvl,rdata_SR,'r','LineWidth', 1.3)
pause;
end
end
if r == 3
d.mdata_SR(:,s,j) = rdata_SR;
end
end
end
if plotopt ==1
figure(2)
plot(d.wvl,d.mdata_SR(:,s,j),color(s))
hold on;
pause;
end
end
close all;
end
d.ubnd_name = input('Input blank series: ','s');
for s = 1:length(d.ubnd_name)
for r = 1:3
if r == 1
%Import Blank:
blank_name = strcat(d.ubnd_name(s) , ' (0',num2str(r),')_Graph.dat');
blank = importdata(blank_name);
blank = blank.data;
blank_SR = blank(:,2);
else
data_name = strcat(d.ubnd_name(s) , ' (0',num2str(r),')_Graph.dat');
rawdata = importdata(data_name);
rawdata = rawdata.data;
rdata_SR = rawdata(:,2) - blank_SR;
if plotopt ==1
if r == 2
figure(1);
plot(d.wvl,rdata_SR,'b','LineWidth', 1.3);
hold on;
elseif r==3
plot(d.wvl,rdata_SR,'r','LineWidth', 1.3)
pause;
end
close(1)
end
if r == 3
d.ubnd(:,s) = rdata_SR;
end
end
end
end
for q = 1:length(d.wvl)
d.mubnd(q) = mean(d.ubnd(q,:));
end
d.bnd_name = input('Input bound series: ','s');
d.bnd_con = input('Input bound series concentration: ','s');
for s = 1:length(d.bnd_name)
for r = 1:3
if r == 1
%Import Blank:
blank_name = strcat(d.bnd_name(s) , ' (0',num2str(r),')_Graph.dat');
blank = importdata(blank_name);
blank = blank.data;
blank_SR = blank(:,2);
else
data_name = strcat(d.bnd_name(s) , ' (0',num2str(r),')_Graph.dat');
rawdata = importdata(data_name);
rawdata = rawdata.data;
rdata_SR = rawdata(:,2) - blank_SR;
if plotopt ==1
if r == 2
plot(d.wvl,rdata_SR,'b','LineWidth', 1.3);
title(['Series' series_name(s) ': ' num2str(con(j))]);
elseif r==3
hold on;
plot(d.wvl,rdata_SR,'r','LineWidth', 1.3)
pause;
end
close all;
end
if r == 3
d.bnd(:,s) = rdata_SR;
end
end
end
end
for q = 1:length(d.wvl)
d.mbnd(q) = mean(d.bnd(q,:));
end
%Program end
end