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I am calculating the z2 invariant of a 2D system with tight binding Hamiltonian. The Hamiltonian is complex conjugate and time reversal invariant. When I calculate z2 invariant it gives WCC are not degenerate Kramers pairs at the edges of the surface.
The values of WCC at the edges are close but have some difference. Upon reducing the pos_tol (say pos_tol = 0.00001) the difference in WCC reduces and the issue is somewhat mitigated.
Please let me know what could be going wrong.