rivet/config.yaml at main · TurakhiaLab/rivet · GitHub

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# Configuration file for RIVET
### Color Schema Options ####
# Base coloring
a: '#cc0000'
g: '#cc7722'
c: '#57026f'
t: '#338333'
base_matching_reference: '#dadada'
reference_track: '#333333'

# Recombinant-Informative Coloring for polygons/position column labels
recomb_match_acceptor: '#2879C0'
recomb_match_donor: '#F9521E'
non_informative_site: '#dadada'

# Breakpoint Intervals
breakpoint_intervals: '#800000'

# Genomic Coordinate Track (default all genomic regions are same color)
genomic_regions: '#33333'
# Step for tick-marks on genomic coordinate track
tick_step: 1000

# Pathogen
ref_seq: NC_045512.gb

### Taxonium Tree View Options ###
date: 2023-01-31
bucket_name: public_trees

# Keep environment as "local"
environment: local
# If running locally, port to use
port: 2000