Merge pull request #4 from TurakhiaLab/qiwen-add-taxons #11
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| name: ci | |
| on: | |
| push: | |
| branches: | |
| - main | |
| permissions: | |
| contents: write | |
| jobs: | |
| Run-metaWEPP: | |
| name: Deploy Job | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.x | |
| - name: Install Dependencies | |
| run: | | |
| sudo apt update | |
| sudo apt-get install minimap2 | |
| pip install viral_usher matplotlib snakemake pandas | |
| - name: Run metaWEPP | |
| run: | | |
| snakemake test --cores 1 |