diff --git a/examples/PASTA/PASTA.eln b/examples/PASTA/PASTA.eln index fe87532..29cd1cf 100644 Binary files a/examples/PASTA/PASTA.eln and b/examples/PASTA/PASTA.eln differ diff --git a/examples/PASTA/README.md b/examples/PASTA/README.md index 5d11bd2..e024439 100644 --- a/examples/PASTA/README.md +++ b/examples/PASTA/README.md @@ -11,7 +11,7 @@ This folder contains two files: ### PASTA.eln ```json { - "@context": "https://w3id.org/ro/crate/1.1/context", + "@context": "https://w3id.org/ro/crate/1.2/context", "@graph": [ { "@id": "ro-crate-metadata.json", @@ -19,34 +19,35 @@ This folder contains two files: "about": { "@id": "./" }, + "name": "RO-Crate metadata descriptor", "conformsTo": { - "@id": "https://w3id.org/ro/crate/1.1" + "@id": "https://w3id.org/ro/crate/1.2" }, "version": "1.0", - "additionalType": "https://purl.archive.org/purl/elnconsortium/eln-spec/1.1", - "datePublished": "2025-10-05T13:46:45.795150", - "dateCreated": "2025-10-05T13:46:45.795214", + "datePublished": "2026-10-02T11:00:33.533503", + "dateCreated": "2026-10-02T11:00:33.533521", "sdPublisher": { - "@id": "PASTA-ELN" + "@id": "#PASTA-ELN" } }, { - "@id": "PASTA-ELN", + "@id": "#PASTA-ELN", "@type": "Organization", - "name": "PASTA ELN", + "name": "PASTA-ELN", "logo": "https://raw.githubusercontent.com/PASTA-ELN/desktop/main/pasta.png", "slogan": "The favorite ELN for experimental scientists", "url": "https://github.com/PASTA-ELN/", - "version": "3.2.1b1" + "version": "3.3.0" }, { - "@id": "affiliation_Forschungszentrum J\u00fclich", + "@id": "#affiliation_Forschungszentrum_J\u00fclich", "@type": "Organization", "name": "Forschungszentrum J\u00fclich" }, { - "@id": "author_Steffen_Brinckmann", + "@id": "#author_Steffen_Brinckmann", "@type": "Person", + "name": "Steffen Brinckmann", "givenName": "Steffen", "familyName": "Brinckmann", "honorificPrefix": "Dr.", @@ -54,7 +55,7 @@ This folder contains two files: "identifier": "https://orcid.org/0000-0003-0930-082X", "worksFor": [ { - "@id": "affiliation_Forschungszentrum J\u00fclich" + "@id": "#affiliation_Forschungszentrum_J\u00fclich" } ] }, @@ -84,10 +85,7 @@ This folder contains two files: "@id": "./PastasExampleProject/002_DataFiles/" }, { - "@id": "https://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Misc_pollen.jpg/315px-Misc_pollen.jpg" - }, - { - "@id": "./PastasExampleProject/002_DataFiles/simple.csv" + "@id": "./PastasExampleProject/002_DataFiles/story.odt" }, { "@id": "./PastasExampleProject/002_DataFiles/simple.png" @@ -96,16 +94,22 @@ This folder contains two files: "@id": "./PastasExampleProject/002_DataFiles/example.tif" }, { - "@id": "./PastasExampleProject/d-8d5732e15d6d45c8b56c9a84180f9626/" + "@id": "./PastasExampleProject/002_DataFiles/simple.csv" }, { - "@id": "./PastasExampleProject/d-eda9aadea13b45eda396e565910580db/" + "@id": "https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg" }, { - "@id": "./PastasExampleProject/s-d6538d1a6de94bc386bba54e268f7299/" + "@id": "./PastasExampleProject/d-5bc5a0609741480a9d62fc8eec6a6888/" }, { - "@id": "./PastasExampleProject/workplan.py" + "@id": "./PastasExampleProject/d-d343d651b4b84bc5b381b5815260e0b3/" + }, + { + "@id": "./PastasExampleProject/s-ae2ad29097fe4d309af736304934776c/" + }, + { + "@id": "./PastasExampleProject/worklog.log" }, { "@id": "./CommonFiles/Example_SOP.md" @@ -114,59 +118,75 @@ This folder contains two files: "@id": "./PastasExampleProject/procedure.md" }, { - "@id": "./PastasExampleProject/worklog.log" + "@id": "./PastasExampleProject/workplan.py" + } + ], + "name": "Exported from PASTA-ELN", + "description": "Exported content from PASTA-ELN", + "conformsTo": [ + { + "@id": "https://w3id.org/ro/crate/1.2" + }, + { + "@id": "https://purl.archive.org/purl/elnconsortium/eln-spec/1.2+20260923" } ], - "name": "Exported from PASTA ELN", - "description": "Exported content from PASTA ELN", - "license": "https://creativecommons.org/licenses/by-nc-sa/4.0/", - "datePublished": "2025-10-05T13:46:45.795277", + "license": { + "@id": "https://creativecommons.org/licenses/by-nc-sa/4.0/" + }, + "datePublished": "2026-10-02T11:00:33.533573", "creator": [ { - "@id": "author_Steffen_Brinckmann" + "@id": "#author_Steffen_Brinckmann" } - ] + ], + "publisher": { + "@id": "#author_Steffen_Brinckmann" + } }, { "encodingFormat": "text/markdown", - "identifier": "x-302b90b8983d46c5a6b044f1b64ca4b4", + "identifier": "x-d0b187fc2ef0444aa8bcb7353790cf9f", "name": "This is an example task", "genre": "folder", - "dateCreated": "2025-09-30T13:59:35.527369", - "dateModified": "2025-09-30T13:59:35.527383", + "dateCreated": "2026-10-02T11:00:23.860203", + "dateModified": "2026-10-02T11:00:23.860216", "description": "This is hard!", "keywords": "TODO", "@id": "./PastasExampleProject/000_ThisIsAnExampleTask/", - "@type": "Dataset" + "@type": "Dataset", + "hasPart": [] }, { "encodingFormat": "text/markdown", - "identifier": "x-486467ba5c88479e9daba818747323db", + "identifier": "x-cd0992972b18479f940918d176e4a20a", "name": "This is an example subtask", "genre": "folder", - "dateCreated": "2025-09-30T13:59:35.535625", - "dateModified": "2025-09-30T13:59:35.535641", + "dateCreated": "2026-10-02T11:00:23.867297", + "dateModified": "2026-10-02T11:00:23.867309", "description": "Random comment 1", "@id": "./PastasExampleProject/001_ThisIsAnotherExampleTask/000_ThisIsAnExampleSubtask/", - "@type": "Dataset" + "@type": "Dataset", + "hasPart": [] }, { "encodingFormat": "text/markdown", - "identifier": "x-28cdd6245bd94331a845092958cc5d6b", + "identifier": "x-d4e2f1cc55c24b588cf93643651522e3", "name": "This is another example subtask", "genre": "folder", - "dateCreated": "2025-09-30T13:59:35.539104", - "dateModified": "2025-09-30T13:59:35.539162", + "dateCreated": "2026-10-02T11:00:23.870552", + "dateModified": "2026-10-02T11:00:23.870565", "description": "Random comment 2", "@id": "./PastasExampleProject/001_ThisIsAnotherExampleTask/001_ThisIsAnotherExampleSubtask/", - "@type": "Dataset" + "@type": "Dataset", + "hasPart": [] }, { "value": "600+/- 3", "propertyID": "metaUser.imageHeight", "name": "Metauser \u2192 Imageheight", "@type": "PropertyValue", - "@id": "./PastasExampleProject/001_ThisIsAnotherExampleTask/simple.png_metaUser.imageHeight", + "@id": "#PastasExampleProject/001_ThisIsAnotherExampleTask/simple.png_metaUser.imageHeight", "unitText": "mm", "description": "H\u00f6he des Bildes", "identifier": "http://purl.allotrope.org/ontologies/result#AFR_0002467" @@ -176,7 +196,7 @@ This folder contains two files: "propertyID": "metaUser.imageWidth", "name": "Metauser \u2192 Imagewidth", "@type": "PropertyValue", - "@id": "./PastasExampleProject/001_ThisIsAnotherExampleTask/simple.png_metaUser.imageWidth", + "@id": "#PastasExampleProject/001_ThisIsAnotherExampleTask/simple.png_metaUser.imageWidth", "unitText": "mm", "description": "Largeur de l`image", "identifier": "http://purl.allotrope.org/ontologies/result#AFR_0002468" @@ -186,22 +206,22 @@ This folder contains two files: "propertyID": "metaVendor.Comment", "name": "Metavendor \u2192 Comment", "@type": "PropertyValue", - "@id": "./PastasExampleProject/001_ThisIsAnotherExampleTask/simple.png_metaVendor.Comment" + "@id": "#PastasExampleProject/001_ThisIsAnotherExampleTask/simple.png_metaVendor.Comment" }, { "value": "png", "propertyID": "metaVendor.fileExtension", "name": "Metavendor \u2192 Fileextension", "@type": "PropertyValue", - "@id": "./PastasExampleProject/001_ThisIsAnotherExampleTask/simple.png_metaVendor.fileExtension" + "@id": "#PastasExampleProject/001_ThisIsAnotherExampleTask/simple.png_metaVendor.fileExtension" }, { "encodingFormat": "text/markdown", - "identifier": "m-caa8c49495674168b93362dd75da63cc", + "identifier": "m-100ac4e7bc6c43b5b1b07c445ec0b1ce", "name": "simple.png", "genre": "measurement/image", - "dateCreated": "2025-09-30T13:59:35.904659", - "dateModified": "2025-09-30T13:59:36.243134", + "dateCreated": "2026-10-02T11:00:27.843613", + "dateModified": "2026-10-02T11:00:29.083162", "description": "# File with two locations\n - The same file can be located in different locations across different projects within one project group.\n - Since it is the same file, they share the same metadata: same comment, same tags, ...\n# These .png files use the data-science concept of schemata and ontology\n - The files have a agreed upon name and a custom convenience name (i.e. in german or french)\n - The also have a PID / PURL to an ontology node.\n - Units are also supported, obviously.", "@id": "./PastasExampleProject/001_ThisIsAnotherExampleTask/simple.png", "contentSize": "9450", @@ -209,26 +229,26 @@ This folder contains two files: "@type": "File", "variableMeasured": [ { - "@id": "./PastasExampleProject/001_ThisIsAnotherExampleTask/simple.png_metaUser.imageHeight" + "@id": "#PastasExampleProject/001_ThisIsAnotherExampleTask/simple.png_metaUser.imageHeight" }, { - "@id": "./PastasExampleProject/001_ThisIsAnotherExampleTask/simple.png_metaUser.imageWidth" + "@id": "#PastasExampleProject/001_ThisIsAnotherExampleTask/simple.png_metaUser.imageWidth" }, { - "@id": "./PastasExampleProject/001_ThisIsAnotherExampleTask/simple.png_metaVendor.Comment" + "@id": "#PastasExampleProject/001_ThisIsAnotherExampleTask/simple.png_metaVendor.Comment" }, { - "@id": "./PastasExampleProject/001_ThisIsAnotherExampleTask/simple.png_metaVendor.fileExtension" + "@id": "#PastasExampleProject/001_ThisIsAnotherExampleTask/simple.png_metaVendor.fileExtension" } ] }, { "encodingFormat": "text/markdown", - "identifier": "x-d955594ae0d5414cb064c072b5e4565c", + "identifier": "x-34674b1de17d4d138702a3a533c3e98d", "name": "This is another example task", "genre": "folder", - "dateCreated": "2025-09-30T13:59:35.530746", - "dateModified": "2025-09-30T13:59:35.530759", + "dateCreated": "2026-10-02T11:00:23.863827", + "dateModified": "2026-10-02T11:00:23.863840", "description": "This will take a long time.", "keywords": "WAIT", "hasPart": [ @@ -246,57 +266,108 @@ This folder contains two files: "@type": "Dataset" }, { - "value": "w-8c030d6d07864ce58ab63efc8969234b", - "propertyID": ".workflow/procedure", - "name": " \u2192 Workflow/procedure", + "encodingFormat": "text/markdown", + "identifier": "--e559146420a44076bf0e56200f33a593", + "name": "story.odt", + "dateCreated": "2026-10-02T11:00:26.489134", + "dateModified": "2026-10-02T11:00:26.489156", + "@id": "./PastasExampleProject/002_DataFiles/story.odt", + "contentSize": "8417", + "sha256": "c0aeebc4bdb1f4ce13cb881e70d26738bc354da855067e2bfb2dcbfd6140a730", + "@type": "File" + }, + { + "value": "600+/- 3", + "propertyID": "metaUser.imageHeight", + "name": "Metauser \u2192 Imageheight", "@type": "PropertyValue", - "@id": "https://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Misc_pollen.jpg/315px-Misc_pollen.jpg_.workflow/procedure" + "@id": "#PastasExampleProject/002_DataFiles/simple.png_metaUser.imageHeight", + "unitText": "mm", + "description": "H\u00f6he des Bildes", + "identifier": "http://purl.allotrope.org/ontologies/result#AFR_0002467" }, { - "value": "[240, 315]", - "propertyID": "metaUser.dimension", - "name": "Metauser \u2192 Dimension", + "value": "800", + "propertyID": "metaUser.imageWidth", + "name": "Metauser \u2192 Imagewidth", "@type": "PropertyValue", - "@id": "https://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Misc_pollen.jpg/315px-Misc_pollen.jpg_metaUser.dimension" + "@id": "#PastasExampleProject/002_DataFiles/simple.png_metaUser.imageWidth", + "unitText": "mm", + "description": "Largeur de l`image", + "identifier": "http://purl.allotrope.org/ontologies/result#AFR_0002468" }, { - "value": "75600", - "propertyID": "metaUser.number pixel", - "name": "Metauser \u2192 Number pixel", + "value": "Created with GIMP", + "propertyID": "metaVendor.Comment", + "name": "Metavendor \u2192 Comment", "@type": "PropertyValue", - "@id": "https://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Misc_pollen.jpg/315px-Misc_pollen.jpg_metaUser.number pixel" + "@id": "#PastasExampleProject/002_DataFiles/simple.png_metaVendor.Comment" }, { - "value": "jpg", + "value": "png", "propertyID": "metaVendor.fileExtension", "name": "Metavendor \u2192 Fileextension", "@type": "PropertyValue", - "@id": "https://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Misc_pollen.jpg/315px-Misc_pollen.jpg_metaVendor.fileExtension" + "@id": "#PastasExampleProject/002_DataFiles/simple.png_metaVendor.fileExtension" }, { "encodingFormat": "text/markdown", - "identifier": "m-31148bcf77fa4dcc83eae7fe4f65eda2", - "name": "https://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Misc_pollen.jpg/315px-Misc_pollen.jpg", + "identifier": "m-100ac4e7bc6c43b5b1b07c445ec0b1ce", + "name": "simple.png", "genre": "measurement/image", - "dateCreated": "2025-09-30T13:59:36.187021", - "dateModified": "2025-09-30T13:59:36.187033", - "description": "- Remote image from wikipedia. Used for testing and reference\n- This item links to a procedure that was used for its creation.\n- One can link to samples, etc. to create complex metadata\n- This item also has a rating", - "keywords": "_3", - "@id": "https://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Misc_pollen.jpg/315px-Misc_pollen.jpg", - "url": "https://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Misc_pollen.jpg/315px-Misc_pollen.jpg", + "dateCreated": "2026-10-02T11:00:27.843613", + "dateModified": "2026-10-02T11:00:29.083162", + "description": "# File with two locations\n - The same file can be located in different locations across different projects within one project group.\n - Since it is the same file, they share the same metadata: same comment, same tags, ...\n# These .png files use the data-science concept of schemata and ontology\n - The files have a agreed upon name and a custom convenience name (i.e. in german or french)\n - The also have a PID / PURL to an ontology node.\n - Units are also supported, obviously.", + "@id": "./PastasExampleProject/002_DataFiles/simple.png", + "contentSize": "9450", + "sha256": "e8b9e203eff32379a69bb3785e51a5edce8aa7fc4809c696eae8ddee7bab8210", "@type": "File", "variableMeasured": [ { - "@id": "https://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Misc_pollen.jpg/315px-Misc_pollen.jpg_.workflow/procedure" + "@id": "#PastasExampleProject/002_DataFiles/simple.png_metaUser.imageHeight" }, { - "@id": "https://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Misc_pollen.jpg/315px-Misc_pollen.jpg_metaUser.dimension" + "@id": "#PastasExampleProject/002_DataFiles/simple.png_metaUser.imageWidth" }, { - "@id": "https://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Misc_pollen.jpg/315px-Misc_pollen.jpg_metaUser.number pixel" + "@id": "#PastasExampleProject/002_DataFiles/simple.png_metaVendor.Comment" }, { - "@id": "https://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Misc_pollen.jpg/315px-Misc_pollen.jpg_metaVendor.fileExtension" + "@id": "#PastasExampleProject/002_DataFiles/simple.png_metaVendor.fileExtension" + } + ] + }, + { + "value": "raw", + "propertyID": "metaVendor.compression", + "name": "Metavendor \u2192 Compression", + "@type": "PropertyValue", + "@id": "#PastasExampleProject/002_DataFiles/example.tif_metaVendor.compression" + }, + { + "value": "tif", + "propertyID": "metaVendor.fileExtension", + "name": "Metavendor \u2192 Fileextension", + "@type": "PropertyValue", + "@id": "#PastasExampleProject/002_DataFiles/example.tif_metaVendor.fileExtension" + }, + { + "encodingFormat": "text/markdown", + "identifier": "m-a97f77abd35f49399204d578fbc6247c", + "name": "example.tif", + "genre": "measurement/image", + "dateCreated": "2026-10-02T11:00:27.858030", + "dateModified": "2026-10-02T11:00:27.858047", + "@id": "./PastasExampleProject/002_DataFiles/example.tif", + "contentSize": "4031", + "sha256": "375169346c317fc3908616e5fad84efd5c1eba92db1458be55a42e8273ac8a4a", + "@type": "File", + "variableMeasured": [ + { + "@id": "#PastasExampleProject/002_DataFiles/example.tif_metaVendor.compression" + }, + { + "@id": "#PastasExampleProject/002_DataFiles/example.tif_metaVendor.fileExtension" } ] }, @@ -305,7 +376,7 @@ This folder contains two files: "propertyID": "metaUser.maximumYData", "name": "Metauser \u2192 Maximumydata", "@type": "PropertyValue", - "@id": "./PastasExampleProject/002_DataFiles/simple.csv_metaUser.maximumYData", + "@id": "#PastasExampleProject/002_DataFiles/simple.csv_metaUser.maximumYData", "unitText": "m", "description": "Maximum y-data" }, @@ -314,7 +385,7 @@ This folder contains two files: "propertyID": "metaUser.sampleFrequency", "name": "Metauser \u2192 Samplefrequency", "@type": "PropertyValue", - "@id": "./PastasExampleProject/002_DataFiles/simple.csv_metaUser.sampleFrequency", + "@id": "#PastasExampleProject/002_DataFiles/simple.csv_metaUser.sampleFrequency", "unitText": "Hz", "description": "Sample frequency" }, @@ -323,15 +394,15 @@ This folder contains two files: "propertyID": "metaVendor.fileExtension", "name": "Metavendor \u2192 Fileextension", "@type": "PropertyValue", - "@id": "./PastasExampleProject/002_DataFiles/simple.csv_metaVendor.fileExtension" + "@id": "#PastasExampleProject/002_DataFiles/simple.csv_metaVendor.fileExtension" }, { "encodingFormat": "text/markdown", - "identifier": "m-8bab0f4ebc8545c6a001add863c29837", + "identifier": "m-ab8cdb41795c4f3c9803b4ca8f221353", "name": "simple.csv", "genre": "measurement/csv/linesAndDots", - "dateCreated": "2025-09-30T13:59:35.876617", - "dateModified": "2025-09-30T13:59:36.248293", + "dateCreated": "2026-10-02T11:00:27.863108", + "dateModified": "2026-10-02T11:00:29.089564", "description": "# These .csv files use the simple concept of units for metadata entries", "@id": "./PastasExampleProject/002_DataFiles/simple.csv", "contentSize": "187", @@ -339,130 +410,156 @@ This folder contains two files: "@type": "File", "variableMeasured": [ { - "@id": "./PastasExampleProject/002_DataFiles/simple.csv_metaUser.maximumYData" + "@id": "#PastasExampleProject/002_DataFiles/simple.csv_metaUser.maximumYData" }, { - "@id": "./PastasExampleProject/002_DataFiles/simple.csv_metaUser.sampleFrequency" + "@id": "#PastasExampleProject/002_DataFiles/simple.csv_metaUser.sampleFrequency" }, { - "@id": "./PastasExampleProject/002_DataFiles/simple.csv_metaVendor.fileExtension" + "@id": "#PastasExampleProject/002_DataFiles/simple.csv_metaVendor.fileExtension" } ] }, { - "value": "600+/- 3", - "propertyID": "metaUser.imageHeight", - "name": "Metauser \u2192 Imageheight", + "value": "w-62aaaaa929a54c01abbb2cd852b53cce", + "propertyID": ".workflow/procedure", + "name": " \u2192 Workflow/procedure", "@type": "PropertyValue", - "@id": "./PastasExampleProject/002_DataFiles/simple.png_metaUser.imageHeight", - "unitText": "mm", - "description": "H\u00f6he des Bildes", - "identifier": "http://purl.allotrope.org/ontologies/result#AFR_0002467" + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_.workflow/procedure" }, { - "value": "800", - "propertyID": "metaUser.imageWidth", - "name": "Metauser \u2192 Imagewidth", + "value": "[76, 261, 3]", + "propertyID": "metaUser.dimension", + "name": "Metauser \u2192 Dimension", "@type": "PropertyValue", - "@id": "./PastasExampleProject/002_DataFiles/simple.png_metaUser.imageWidth", - "unitText": "mm", - "description": "Largeur de l`image", - "identifier": "http://purl.allotrope.org/ontologies/result#AFR_0002468" + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaUser.dimension" }, { - "value": "Created with GIMP", - "propertyID": "metaVendor.Comment", - "name": "Metavendor \u2192 Comment", + "value": "59508", + "propertyID": "metaUser.number pixel", + "name": "Metauser \u2192 Number pixel", "@type": "PropertyValue", - "@id": "./PastasExampleProject/002_DataFiles/simple.png_metaVendor.Comment" + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaUser.number_pixel" }, { - "value": "png", - "propertyID": "metaVendor.fileExtension", - "name": "Metavendor \u2192 Fileextension", + "value": "100", + "propertyID": "metaVendor.adobe", + "name": "Metavendor \u2192 Adobe", "@type": "PropertyValue", - "@id": "./PastasExampleProject/002_DataFiles/simple.png_metaVendor.fileExtension" + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaVendor.adobe" }, { - "encodingFormat": "text/markdown", - "identifier": "m-caa8c49495674168b93362dd75da63cc", - "name": "simple.png", - "genre": "measurement/image", - "dateCreated": "2025-09-30T13:59:35.904659", - "dateModified": "2025-09-30T13:59:36.243134", - "description": "# File with two locations\n - The same file can be located in different locations across different projects within one project group.\n - Since it is the same file, they share the same metadata: same comment, same tags, ...\n# These .png files use the data-science concept of schemata and ontology\n - The files have a agreed upon name and a custom convenience name (i.e. in german or french)\n - The also have a PID / PURL to an ontology node.\n - Units are also supported, obviously.", - "@id": "./PastasExampleProject/002_DataFiles/simple.png", - "contentSize": "9450", - "sha256": "e8b9e203eff32379a69bb3785e51a5edce8aa7fc4809c696eae8ddee7bab8210", - "@type": "File", - "variableMeasured": [ - { - "@id": "./PastasExampleProject/002_DataFiles/simple.png_metaUser.imageHeight" - }, - { - "@id": "./PastasExampleProject/002_DataFiles/simple.png_metaUser.imageWidth" - }, - { - "@id": "./PastasExampleProject/002_DataFiles/simple.png_metaVendor.Comment" - }, - { - "@id": "./PastasExampleProject/002_DataFiles/simple.png_metaVendor.fileExtension" - } - ] + "value": "1", + "propertyID": "metaVendor.adobe_transform", + "name": "Metavendor \u2192 Adobetransform", + "@type": "PropertyValue", + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaVendor.adobe_transform" }, { - "value": "raw", - "propertyID": "metaVendor.compression", - "name": "Metavendor \u2192 Compression", + "value": "[72, 72]", + "propertyID": "metaVendor.dpi", + "name": "Metavendor \u2192 Dpi", "@type": "PropertyValue", - "@id": "./PastasExampleProject/002_DataFiles/example.tif_metaVendor.compression" + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaVendor.dpi" }, { - "value": "tif", + "value": "ExifII*", + "propertyID": "metaVendor.exif", + "name": "Metavendor \u2192 Exif", + "@type": "PropertyValue", + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaVendor.exif" + }, + { + "value": "jpeg", "propertyID": "metaVendor.fileExtension", "name": "Metavendor \u2192 Fileextension", "@type": "PropertyValue", - "@id": "./PastasExampleProject/002_DataFiles/example.tif_metaVendor.fileExtension" + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaVendor.fileExtension" + }, + { + "value": "{1028: b'\\x1c\\x01Z\\x00\\x03\\x1b%G\\x1c\\x02\\x00\\x00\\x02\\x00\\x02', 1061: b'\\xfc\\xe1\\x1f\\x89\\xc8\\xb7\\xc9x/4b4\\x07Xw\\xeb'}", + "propertyID": "metaVendor.photoshop", + "name": "Metavendor \u2192 Photoshop", + "@type": "PropertyValue", + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaVendor.photoshop" + }, + { + "value": "b' Druck '", + "propertyID": "metaVendor.xmp", + "name": "Metavendor \u2192 Xmp", + "@type": "PropertyValue", + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaVendor.xmp" }, { "encodingFormat": "text/markdown", - "identifier": "m-f482e5f4ee1e4e67a2d70e1e42f8fef6", - "name": "example.tif", + "identifier": "m-ec110d9a0d864d39b4784121bafc8571", + "name": "https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg", "genre": "measurement/image", - "dateCreated": "2025-09-30T13:59:35.738269", - "dateModified": "2025-09-30T13:59:35.738282", - "@id": "./PastasExampleProject/002_DataFiles/example.tif", - "contentSize": "4031", - "sha256": "375169346c317fc3908616e5fad84efd5c1eba92db1458be55a42e8273ac8a4a", + "dateCreated": "2026-10-02T11:00:29.004663", + "dateModified": "2026-10-02T11:00:29.004682", + "description": "- Remote image from samplelib. Used for testing and reference\n- This item links to a procedure that was used for its creation.\n- One can link to samples, etc. to create complex metadata\n- This item also has a rating", + "keywords": "_3", + "@id": "https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg", + "url": "https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg", + "sdDatePublished": "2026-10-02T11:00:33.524362", + "contentSize": "21232", + "sha256": "a110ce6536f90eea6f4437566f9d5ff706bc7a1c35cf56702efb05b9c48c3f49", "@type": "File", "variableMeasured": [ { - "@id": "./PastasExampleProject/002_DataFiles/example.tif_metaVendor.compression" + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_.workflow/procedure" + }, + { + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaUser.dimension" + }, + { + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaUser.number_pixel" + }, + { + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaVendor.adobe" + }, + { + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaVendor.adobe_transform" + }, + { + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaVendor.dpi" + }, + { + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaVendor.exif" + }, + { + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaVendor.fileExtension" }, { - "@id": "./PastasExampleProject/002_DataFiles/example.tif_metaVendor.fileExtension" + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaVendor.photoshop" + }, + { + "@id": "#https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg_metaVendor.xmp" } ] }, { "encodingFormat": "text/markdown", - "identifier": "x-3d01c1d8d3db4dab83be9a4df48594a1", + "identifier": "x-9a1628f9947648e0a02b392dfb70aa63", "name": "Data files", "genre": "folder", - "dateCreated": "2025-09-30T13:59:35.542559", - "dateModified": "2025-09-30T13:59:35.542571", + "dateCreated": "2026-10-02T11:00:23.873903", + "dateModified": "2026-10-02T11:00:23.873916", "hasPart": [ { - "@id": "https://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Misc_pollen.jpg/315px-Misc_pollen.jpg" - }, - { - "@id": "./PastasExampleProject/002_DataFiles/simple.csv" + "@id": "./PastasExampleProject/002_DataFiles/story.odt" }, { "@id": "./PastasExampleProject/002_DataFiles/simple.png" }, { "@id": "./PastasExampleProject/002_DataFiles/example.tif" + }, + { + "@id": "./PastasExampleProject/002_DataFiles/simple.csv" + }, + { + "@id": "https://www.fz-juelich.de/en/ibg/ibg-1/images/research_groups/general/fz-juelich-logo/@@images/image-261-9d3b36703de5ad2157c50aa585e7d2bf.jpeg" } ], "@id": "./PastasExampleProject/002_DataFiles/", @@ -473,31 +570,32 @@ This folder contains two files: "propertyID": ".model", "name": " \u2192 Model", "@type": "PropertyValue", - "@id": "./PastasExampleProject/d-8d5732e15d6d45c8b56c9a84180f9626/_.model" + "@id": "#PastasExampleProject/d-5bc5a0609741480a9d62fc8eec6a6888/_.model" }, { "value": "Company A", "propertyID": ".vendor", "name": " \u2192 Vendor", "@type": "PropertyValue", - "@id": "./PastasExampleProject/d-8d5732e15d6d45c8b56c9a84180f9626/_.vendor" + "@id": "#PastasExampleProject/d-5bc5a0609741480a9d62fc8eec6a6888/_.vendor" }, { "encodingFormat": "text/markdown", - "identifier": "d-8d5732e15d6d45c8b56c9a84180f9626", + "identifier": "d-5bc5a0609741480a9d62fc8eec6a6888", "name": "Big instrument", "genre": "device", - "dateCreated": "2025-09-30T13:59:35.633891", - "dateModified": "2025-09-30T13:59:35.633900", + "dateCreated": "2026-10-02T11:00:26.438735", + "dateModified": "2026-10-02T11:00:26.438746", "description": "Instrument onto which attachments can be added", - "@id": "./PastasExampleProject/d-8d5732e15d6d45c8b56c9a84180f9626/", + "@id": "./PastasExampleProject/d-5bc5a0609741480a9d62fc8eec6a6888/", "@type": "Dataset", + "hasPart": [], "variableMeasured": [ { - "@id": "./PastasExampleProject/d-8d5732e15d6d45c8b56c9a84180f9626/_.model" + "@id": "#PastasExampleProject/d-5bc5a0609741480a9d62fc8eec6a6888/_.model" }, { - "@id": "./PastasExampleProject/d-8d5732e15d6d45c8b56c9a84180f9626/_.vendor" + "@id": "#PastasExampleProject/d-5bc5a0609741480a9d62fc8eec6a6888/_.vendor" } ] }, @@ -506,31 +604,32 @@ This folder contains two files: "propertyID": ".model", "name": " \u2192 Model", "@type": "PropertyValue", - "@id": "./PastasExampleProject/d-eda9aadea13b45eda396e565910580db/_.model" + "@id": "#PastasExampleProject/d-d343d651b4b84bc5b381b5815260e0b3/_.model" }, { "value": "Company B", "propertyID": ".vendor", "name": " \u2192 Vendor", "@type": "PropertyValue", - "@id": "./PastasExampleProject/d-eda9aadea13b45eda396e565910580db/_.vendor" + "@id": "#PastasExampleProject/d-d343d651b4b84bc5b381b5815260e0b3/_.vendor" }, { "encodingFormat": "text/markdown", - "identifier": "d-eda9aadea13b45eda396e565910580db", + "identifier": "d-d343d651b4b84bc5b381b5815260e0b3", "name": "Sensor", "genre": "device/extension", - "dateCreated": "2025-09-30T13:59:35.637267", - "dateModified": "2025-09-30T13:59:35.637281", + "dateCreated": "2026-10-02T11:00:26.441906", + "dateModified": "2026-10-02T11:00:26.441920", "description": "Attachment that increases functionality of big instrument", - "@id": "./PastasExampleProject/d-eda9aadea13b45eda396e565910580db/", + "@id": "./PastasExampleProject/d-d343d651b4b84bc5b381b5815260e0b3/", "@type": "Dataset", + "hasPart": [], "variableMeasured": [ { - "@id": "./PastasExampleProject/d-eda9aadea13b45eda396e565910580db/_.model" + "@id": "#PastasExampleProject/d-d343d651b4b84bc5b381b5815260e0b3/_.model" }, { - "@id": "./PastasExampleProject/d-eda9aadea13b45eda396e565910580db/_.vendor" + "@id": "#PastasExampleProject/d-d343d651b4b84bc5b381b5815260e0b3/_.vendor" } ] }, @@ -539,101 +638,99 @@ This folder contains two files: "propertyID": "qrCodes.0", "name": "Qrcodes \u2192 0", "@type": "PropertyValue", - "@id": "./PastasExampleProject/s-d6538d1a6de94bc386bba54e268f7299/_qrCodes.0" + "@id": "#PastasExampleProject/s-ae2ad29097fe4d309af736304934776c/_qrCodes.0" }, { "value": "99698708", "propertyID": "qrCodes.1", "name": "Qrcodes \u2192 1", "@type": "PropertyValue", - "@id": "./PastasExampleProject/s-d6538d1a6de94bc386bba54e268f7299/_qrCodes.1" + "@id": "#PastasExampleProject/s-ae2ad29097fe4d309af736304934776c/_qrCodes.1" }, { "value": "A2B2C3", "propertyID": ".chemistry", "name": " \u2192 Chemistry", "@type": "PropertyValue", - "@id": "./PastasExampleProject/s-d6538d1a6de94bc386bba54e268f7299/_.chemistry" + "@id": "#PastasExampleProject/s-ae2ad29097fe4d309af736304934776c/_.chemistry" }, { "value": "4", "propertyID": "geometry.height", "name": "Geometry \u2192 Height", "@type": "PropertyValue", - "@id": "./PastasExampleProject/s-d6538d1a6de94bc386bba54e268f7299/_geometry.height", - "unitText": "mm", - "description": "Sample height", - "identifier": "https://schema.org/height" + "@id": "#PastasExampleProject/s-ae2ad29097fe4d309af736304934776c/_geometry.height", + "unitText": "mm" }, { "value": "2", "propertyID": "geometry.width", "name": "Geometry \u2192 Width", "@type": "PropertyValue", - "@id": "./PastasExampleProject/s-d6538d1a6de94bc386bba54e268f7299/_geometry.width", - "unitText": "mm", - "description": "Sample width" + "@id": "#PastasExampleProject/s-ae2ad29097fe4d309af736304934776c/_geometry.width", + "unitText": "mm" }, { "value": "6", "propertyID": "weight.initial", "name": "Weight \u2192 Initial", "@type": "PropertyValue", - "@id": "./PastasExampleProject/s-d6538d1a6de94bc386bba54e268f7299/_weight.initial" + "@id": "#PastasExampleProject/s-ae2ad29097fe4d309af736304934776c/_weight.initial" }, { "encodingFormat": "text/markdown", - "identifier": "s-d6538d1a6de94bc386bba54e268f7299", + "identifier": "s-ae2ad29097fe4d309af736304934776c", "name": "Example sample", "genre": "sample", - "dateCreated": "2025-09-30T13:59:35.609750", - "dateModified": "2025-09-30T13:59:35.609760", + "dateCreated": "2026-10-02T11:00:26.399223", + "dateModified": "2026-10-02T11:00:26.399245", "description": "this sample has multiple groups of metadata", - "@id": "./PastasExampleProject/s-d6538d1a6de94bc386bba54e268f7299/", + "@id": "./PastasExampleProject/s-ae2ad29097fe4d309af736304934776c/", "@type": "Dataset", + "hasPart": [], "variableMeasured": [ { - "@id": "./PastasExampleProject/s-d6538d1a6de94bc386bba54e268f7299/_qrCodes.0" + "@id": "#PastasExampleProject/s-ae2ad29097fe4d309af736304934776c/_qrCodes.0" }, { - "@id": "./PastasExampleProject/s-d6538d1a6de94bc386bba54e268f7299/_qrCodes.1" + "@id": "#PastasExampleProject/s-ae2ad29097fe4d309af736304934776c/_qrCodes.1" }, { - "@id": "./PastasExampleProject/s-d6538d1a6de94bc386bba54e268f7299/_.chemistry" + "@id": "#PastasExampleProject/s-ae2ad29097fe4d309af736304934776c/_.chemistry" }, { - "@id": "./PastasExampleProject/s-d6538d1a6de94bc386bba54e268f7299/_geometry.height" + "@id": "#PastasExampleProject/s-ae2ad29097fe4d309af736304934776c/_geometry.height" }, { - "@id": "./PastasExampleProject/s-d6538d1a6de94bc386bba54e268f7299/_geometry.width" + "@id": "#PastasExampleProject/s-ae2ad29097fe4d309af736304934776c/_geometry.width" }, { - "@id": "./PastasExampleProject/s-d6538d1a6de94bc386bba54e268f7299/_weight.initial" + "@id": "#PastasExampleProject/s-ae2ad29097fe4d309af736304934776c/_weight.initial" } ] }, { - "value": "py", + "value": "log", "propertyID": "metaVendor.fileExtension", "name": "Metavendor \u2192 Fileextension", "@type": "PropertyValue", - "@id": "./PastasExampleProject/workplan.py_metaVendor.fileExtension" + "@id": "#PastasExampleProject/worklog.log_metaVendor.fileExtension" }, { "encodingFormat": "text/markdown", - "identifier": "w-7f4c698b0d854a4490e4cc2b63e6763b", - "name": "workplan.py", - "genre": "workflow/workplan", - "dateCreated": "2025-09-30T13:59:35.588600", - "dateModified": "2025-09-30T13:59:35.588620", - "text": "``` python\n\"\"\" Example workflow for the Sandia Fracture Challenge 3 \"\"\"\n# pylint: skip-file\n# head of workflow: always the same\nfrom urllib.parse import urlparse\nfrom common_workflow_description.commo", - "@id": "./PastasExampleProject/workplan.py", - "contentSize": "1926", - "sha256": "c12f18f0ef845974540a4b00cbf1119c58ce52cc31bbaef4c7cddd79457f1f1c", + "identifier": "w-62a68c7b9381400db770ed6d18126079", + "name": "worklog.log", + "genre": "workflow/worklog", + "dateCreated": "2026-10-02T11:00:26.379714", + "dateModified": "2026-10-02T11:00:26.379728", + "text": "02-21 11:44:54|INFO:Start workflow\n02-21 11:44:54|INFO:Start step sample:{AM_NA_05} procedure-name:{metallography} sha256:{aa3df28fb706568036a85375e62ad76149801b141eb07d629422d511fe901735} paramete", + "@id": "./PastasExampleProject/worklog.log", + "contentSize": "14582", + "sha256": "1b7d679067a8db3aa15eb1eb77bbb19598ec5a7e4c75c08eb160440f47634290", "@type": "File", "variableMeasured": [ { - "@id": "./PastasExampleProject/workplan.py_metaVendor.fileExtension" + "@id": "#PastasExampleProject/worklog.log_metaVendor.fileExtension" } ] }, @@ -642,15 +739,15 @@ This folder contains two files: "propertyID": "metaVendor.fileExtension", "name": "Metavendor \u2192 Fileextension", "@type": "PropertyValue", - "@id": "./CommonFiles/Example_SOP.md_metaVendor.fileExtension" + "@id": "#CommonFiles/Example_SOP.md_metaVendor.fileExtension" }, { "encodingFormat": "text/markdown", - "identifier": "w-8c030d6d07864ce58ab63efc8969234b", + "identifier": "w-62aaaaa929a54c01abbb2cd852b53cce", "name": "Example_SOP.md", "genre": "workflow/procedure/markdown", - "dateCreated": "2025-09-30T13:59:35.556360", - "dateModified": "2025-09-30T13:59:35.556373", + "dateCreated": "2026-10-02T11:00:25.042752", + "dateModified": "2026-10-02T11:00:25.042771", "text": "# Put sample in instrument\n# Do something\nDo not forget to\n- not do anything wrong\n- **USE BOLD LETTERS**", "keywords": "v1", "@id": "./CommonFiles/Example_SOP.md", @@ -659,7 +756,7 @@ This folder contains two files: "@type": "File", "variableMeasured": [ { - "@id": "./CommonFiles/Example_SOP.md_metaVendor.fileExtension" + "@id": "#CommonFiles/Example_SOP.md_metaVendor.fileExtension" } ] }, @@ -668,15 +765,15 @@ This folder contains two files: "propertyID": "metaVendor.fileExtension", "name": "Metavendor \u2192 Fileextension", "@type": "PropertyValue", - "@id": "./PastasExampleProject/procedure.md_metaVendor.fileExtension" + "@id": "#PastasExampleProject/procedure.md_metaVendor.fileExtension" }, { "encodingFormat": "text/markdown", - "identifier": "w-8d5f188afaba42f49cc1303b1f6c4362", + "identifier": "w-961cbae6102b4194a51b289a93bc0caa", "name": "procedure.md", "genre": "workflow/procedure/markdown", - "dateCreated": "2025-09-30T13:59:35.581810", - "dateModified": "2025-09-30T13:59:35.581905", + "dateCreated": "2026-10-02T11:00:26.376015", + "dateModified": "2026-10-02T11:00:26.376028", "text": "# Tensile testing with Doli\n\n- Setup control box at instrument\n - General information\n - buttons F1..F3 correspond to three symbols above\n - PC-mode: use for control by PC\n - turn knob to get ther", "@id": "./PastasExampleProject/procedure.md", "contentSize": "1322", @@ -684,32 +781,32 @@ This folder contains two files: "@type": "File", "variableMeasured": [ { - "@id": "./PastasExampleProject/procedure.md_metaVendor.fileExtension" + "@id": "#PastasExampleProject/procedure.md_metaVendor.fileExtension" } ] }, { - "value": "log", + "value": "py", "propertyID": "metaVendor.fileExtension", "name": "Metavendor \u2192 Fileextension", "@type": "PropertyValue", - "@id": "./PastasExampleProject/worklog.log_metaVendor.fileExtension" + "@id": "#PastasExampleProject/workplan.py_metaVendor.fileExtension" }, { "encodingFormat": "text/markdown", - "identifier": "w-d5847c97687e4440aefe61151225ea36", - "name": "worklog.log", - "genre": "workflow/worklog", - "dateCreated": "2025-09-30T13:59:35.594870", - "dateModified": "2025-09-30T13:59:35.594891", - "text": "02-21 11:44:54|INFO:Start workflow\n02-21 11:44:54|INFO:Start step sample:{AM_NA_05} procedure-name:{metallography} sha256:{aa3df28fb706568036a85375e62ad76149801b141eb07d629422d511fe901735} paramete", - "@id": "./PastasExampleProject/worklog.log", - "contentSize": "14582", - "sha256": "1b7d679067a8db3aa15eb1eb77bbb19598ec5a7e4c75c08eb160440f47634290", + "identifier": "w-cfc520abeb0d4000b967dd7a4fa9281e", + "name": "workplan.py", + "genre": "workflow/workplan", + "dateCreated": "2026-10-02T11:00:26.371790", + "dateModified": "2026-10-02T11:00:26.371801", + "text": "``` python\n\"\"\" Example workflow for the Sandia Fracture Challenge 3 \"\"\"\n# pylint: skip-file\n# head of workflow: always the same\nfrom urllib.parse import urlparse\nfrom common_workflow_description.commo", + "@id": "./PastasExampleProject/workplan.py", + "contentSize": "1926", + "sha256": "c12f18f0ef845974540a4b00cbf1119c58ce52cc31bbaef4c7cddd79457f1f1c", "@type": "File", "variableMeasured": [ { - "@id": "./PastasExampleProject/worklog.log_metaVendor.fileExtension" + "@id": "#PastasExampleProject/workplan.py_metaVendor.fileExtension" } ] }, @@ -718,22 +815,22 @@ This folder contains two files: "propertyID": ".objective", "name": " \u2192 Objective", "@type": "PropertyValue", - "@id": "./PastasExampleProject/_.objective" + "@id": "#PastasExampleProject/_.objective" }, { "value": "active", "propertyID": ".status", "name": " \u2192 Status", "@type": "PropertyValue", - "@id": "./PastasExampleProject/_.status" + "@id": "#PastasExampleProject/_.status" }, { "encodingFormat": "text/markdown", - "identifier": "x-3221d4ff68ea45be85fb6d753f01f328", + "identifier": "x-3d78fa97c6f94cacaa2a9f097eba5bb3", "name": "PASTAs Example Project", "genre": "folder", - "dateCreated": "2025-09-30T13:59:35.471250", - "dateModified": "2025-09-30T13:59:35.471267", + "dateCreated": "2026-10-02T11:00:23.804725", + "dateModified": "2026-10-02T11:00:23.804744", "description": "Can be used as reference or deleted", "keywords": "Important", "hasPart": [ @@ -747,16 +844,16 @@ This folder contains two files: "@id": "./PastasExampleProject/002_DataFiles/" }, { - "@id": "./PastasExampleProject/d-8d5732e15d6d45c8b56c9a84180f9626/" + "@id": "./PastasExampleProject/d-5bc5a0609741480a9d62fc8eec6a6888/" }, { - "@id": "./PastasExampleProject/d-eda9aadea13b45eda396e565910580db/" + "@id": "./PastasExampleProject/d-d343d651b4b84bc5b381b5815260e0b3/" }, { - "@id": "./PastasExampleProject/s-d6538d1a6de94bc386bba54e268f7299/" + "@id": "./PastasExampleProject/s-ae2ad29097fe4d309af736304934776c/" }, { - "@id": "./PastasExampleProject/workplan.py" + "@id": "./PastasExampleProject/worklog.log" }, { "@id": "./CommonFiles/Example_SOP.md" @@ -765,19 +862,41 @@ This folder contains two files: "@id": "./PastasExampleProject/procedure.md" }, { - "@id": "./PastasExampleProject/worklog.log" + "@id": "./PastasExampleProject/workplan.py" } ], "@id": "./PastasExampleProject/", "@type": "Dataset", "variableMeasured": [ { - "@id": "./PastasExampleProject/_.objective" + "@id": "#PastasExampleProject/_.objective" }, { - "@id": "./PastasExampleProject/_.status" + "@id": "#PastasExampleProject/_.status" } ] + }, + { + "@id": "https://w3id.org/ro/crate/1.2", + "@type": [ + "CreativeWork", + "Profile" + ], + "name": "RO-Crate 1.2 Specification" + }, + { + "@id": "https://purl.archive.org/purl/elnconsortium/eln-spec/1.2+20260923", + "@type": [ + "CreativeWork", + "Profile" + ], + "name": "ELN-File Format 1.2+20260923 Specification" + }, + { + "@id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", + "@type": "CreativeWork", + "name": "CC BY-NC-SA 4.0", + "description": "Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International" } ] } @@ -786,22 +905,25 @@ This folder contains two files: ### goldStandard.eln ```json { - "@context": "https://w3id.org/ro/crate/1.1/context", + "@context": "https://w3id.org/ro/crate/1.2/context", "@graph": [ { "@type": "Organization", "name": "Chemie, Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen, Germany", "identifier": "https://ror.org/05591te55", - "@id": "Organization_Chemie_LudwigMaximiliansUniversitt_Mnchen_Germany" + "@id": "https://ror.org/05591te55" }, { "@type": "Person", "name": "Rachel Jan\u00dfen", "familyName": "Jan\u00dfen", "givenName": "Rachel", - "@id": "Person_Rachel_Janen", + "@id": "#Person_Rachel_Janen", "worksFor": { - "@id": "Organization_Chemie_LudwigMaximiliansUniversitt_Mnchen_Germany" + "@id": "https://ror.org/05591te55" + }, + "affiliation": { + "@id": "https://ror.org/05591te55" } }, { @@ -810,9 +932,12 @@ This folder contains two files: "familyName": "Vetsova", "givenName": "Violeta Aleksandrova", "identifier": "https://orcid.org/0000-0002-4631-377X", - "@id": "Person_Violeta_Aleksandrova_Vetsova", + "@id": "https://orcid.org/0000-0002-4631-377X", "worksFor": { - "@id": "Organization_Chemie_LudwigMaximiliansUniversitt_Mnchen_Germany" + "@id": "https://ror.org/05591te55" + }, + "affiliation": { + "@id": "https://ror.org/05591te55" } }, { @@ -820,9 +945,12 @@ This folder contains two files: "name": "Dominik Gerold Putz", "familyName": "Putz", "givenName": "Dominik Gerold", - "@id": "Person_Dominik_Gerold_Putz", + "@id": "#Person_Dominik_Gerold_Putz", "worksFor": { - "@id": "Organization_Chemie_LudwigMaximiliansUniversitt_Mnchen_Germany" + "@id": "https://ror.org/05591te55" + }, + "affiliation": { + "@id": "https://ror.org/05591te55" } }, { @@ -830,9 +958,12 @@ This folder contains two files: "name": "Peter Mayer", "familyName": "Mayer", "givenName": "Peter ", - "@id": "Person_Peter__Mayer", + "@id": "#Person_Peter__Mayer", "worksFor": { - "@id": "Organization_Chemie_LudwigMaximiliansUniversitt_Mnchen_Germany" + "@id": "https://ror.org/05591te55" + }, + "affiliation": { + "@id": "https://ror.org/05591te55" } }, { @@ -840,9 +971,12 @@ This folder contains two files: "name": "Lena J. Daumann", "familyName": "Daumann", "givenName": "Lena J.", - "@id": "Person_Lena_J_Daumann", + "@id": "#Person_Lena_J_Daumann", "worksFor": { - "@id": "Organization_Chemie_LudwigMaximiliansUniversitt_Mnchen_Germany" + "@id": "https://ror.org/05591te55" + }, + "affiliation": { + "@id": "https://ror.org/05591te55" } }, { @@ -850,43 +984,40 @@ This folder contains two files: "name": "chemotion-repository", "logo": "https://www.chemotion-repository.net/images/repo/Chemotion-V1.png", "url": "https://www.chemotion-repository.net", - "@id": "Organization_chemotionrepository" + "@id": "#Organization_chemotionrepository" }, { "@type": "CreativeWork", "name": "Total synthesis of the quinonoid alcohol dehydrogenase coenzyme (1) of methylotrophic bacteria", - "url": "https://doi.org/10.1021/ja00408a067", - "@id": "CreativeWork_Total_synthesis_of_the_quinonoid_alcohol_dehydrogenase_coenzyme_1_of_methylotrophic_bacteria", - "authors": "Corey, E. J. and Tramontano, Alfonso" + "@id": "https://doi.org/10.1021/ja00408a067" }, { "@type": "CreativeWork", "@id": "https://bioschemas.org/types/MolecularEntity/0.3-RELEASE-2019_09_02" }, { - "@id": "QuantitativeValue_1", + "@id": "#QuantitativeValue_1", "@type": "PropertyValue", "value": 128.12592, "unitCode": "g/mol", - "propertyID": "molecularWeight" + "propertyID": "molecularWeight", + "name": "molecular weight" }, { "@type": "MolecularEntity", - "dct:conformsTo": [ - { - "@id": "https://bioschemas.org/types/MolecularEntity/0.3-RELEASE-2019_09_02" - } - ], + "conformsTo": { + "@id": "https://bioschemas.org/types/MolecularEntity/0.3-RELEASE-2019_09_02" + }, "smiles": "COC(=O)/C=C/C(=O)C", "inChIKey": "GLVNZYODMKSEPS-ONEGZZNKSA-N", "inChI": "InChI=1S/C6H8O3/c1-5(7)3-4-6(8)9-2/h3-4H,1-2H3/b4-3+", "molecularFormula": "C6H8O3", "name": "methyl (E)-4-oxopent-2-enoate", "molecularWeight": { - "@id": "QuantitativeValue_1" + "@id": "#QuantitativeValue_1" }, "iupacName": "methyl (E)-4-oxopent-2-enoate", - "@id": "GLVNZYODMKSEPS-ONEGZZNKSA-N" + "@id": "#GLVNZYODMKSEPS-ONEGZZNKSA-N_" }, { "@type": "CreativeWork", @@ -946,9 +1077,7 @@ This folder contains two files: { "@type": "DefinedTerm", "name": "Analytical Chemistry", - "alternateName": [ - "Chemistry, Analytical" - ], + "alternateName": "Chemistry, Analytical", "inDefinedTermSet": { "@id": "http://purl.obolibrary.org/obo/ncit.owl" }, @@ -959,7 +1088,7 @@ This folder contains two files: "name": "Karlsruhe Institute of Technology (KIT)", "url": "https://www.kit.edu/", "identifier": "https://ror.org/04t3en479", - "@id": "Organization_Karlsruhe_Institute_of_Technology_KIT" + "@id": "https://ror.org/04t3en479" }, { "@type": "Person", @@ -1023,10 +1152,12 @@ This folder contains two files: "description": "Repository for samples, reactions and related research data.", "name": "Chemotion Repository", "provider": { - "@id": "Organization_Karlsruhe_Institute_of_Technology_KIT" + "@id": "https://ror.org/04t3en479" }, "url": "https://www.chemotion-repository.net", - "license": "https://www.gnu.org/licenses/agpl-3.0.en.html", + "license": { + "@id": "https://www.gnu.org/licenses/agpl-3.0.en.html" + }, "contributor": [ { "@id": "https://orcid.org/0000-0002-1692-6778" @@ -1054,7 +1185,7 @@ This folder contains two files: } ], "isAccessibleForFree": true, - "keywordsList": [ + "mentions": [ { "@id": "http://semanticscience.org/resource/SIO_001050" }, @@ -1072,7 +1203,7 @@ This folder contains two files: }, { "@type": "ChemicalSubstance", - "@id": "10.14272/GLVNZYODMKSEPS-ONEGZZNKSA-N.1", + "@id": "https://doi.org/10.14272/GLVNZYODMKSEPS-ONEGZZNKSA-N.1", "identifier": "CRS-25899", "url": "https://www.chemotion-repository.net/inchikey/GLVNZYODMKSEPS-ONEGZZNKSA-N.1", "name": "methyl (E)-4-oxopent-2-enoate", @@ -1080,41 +1211,42 @@ This folder contains two files: "image": "https://www.chemotion-repository.net/images/samples/49c85c066fb3825bc3c07f4205214fe6e099afb0bf615e4238bd53e9d3f000a603ed4d9b87ade4df7be2cf437b9bd3927f144738a4ccf603b5aa3ff4df9e98db.svg", "description": "", "hasBioChemEntityPart": { - "@id": "GLVNZYODMKSEPS-ONEGZZNKSA-N" + "@id": "#GLVNZYODMKSEPS-ONEGZZNKSA-N_" } }, { "@type": "CreativeWork", "@id": "https://doi.org/10.14272/GLVNZYODMKSEPS-ONEGZZNKSA-N/CHMO0000593", - "dct:conformsTo": { + "conformsTo": { "@id": "https://bioschemas.org/types/Study/0.3-DRAFT" }, "publisher": { - "@id": "Organization_chemotionrepository" + "@id": "#Organization_chemotionrepository" }, "dateCreated": "2022-11-02", "datePublished": "2022-11-02", "contributor": { - "@id": "Person_Rachel_Janen" + "@id": "#Person_Rachel_Janen" }, "citation": [], - "authors": [ + "author": [ { - "@id": "Person_Rachel_Janen" + "@id": "#Person_Rachel_Janen" }, { - "@id": "Person_Violeta_Aleksandrova_Vetsova" + "@id": "https://orcid.org/0000-0002-4631-377X" }, { - "@id": "Person_Dominik_Gerold_Putz" + "@id": "#Person_Dominik_Gerold_Putz" }, { - "@id": "Person_Peter__Mayer" + "@id": "#Person_Peter__Mayer" }, { - "@id": "Person_Lena_J_Daumann" + "@id": "#Person_Lena_J_Daumann" } - ] + ], + "name": "1H nuclear magnetic resonance spectroscopy (1H NMR)" }, { "@context": "https://schema.org", @@ -1122,32 +1254,31 @@ This folder contains two files: "@id": "1H_NMR-1H/", "identifier": "CRD-25895", "url": "https://www.chemotion-repository.net/inchikey/GLVNZYODMKSEPS-ONEGZZNKSA-N/CHMO0000593", - "dct:conformsTo": { + "conformsTo": { "@id": "https://schema.org/Dataset" }, "publisher": { - "@id": "Organization_chemotionrepository" + "@id": "#Organization_chemotionrepository" }, - "license": "http://creativecommons.org/licenses/by-sa/4.0/", "name": "1H nuclear magnetic resonance spectroscopy (1H NMR)", "measurementTechnique": { "@id": "http://purl.obolibrary.org/obo/CHMO_0000593" }, "creator": [ { - "@id": "Person_Rachel_Janen" + "@id": "#Person_Rachel_Janen" }, { - "@id": "Person_Violeta_Aleksandrova_Vetsova" + "@id": "https://orcid.org/0000-0002-4631-377X" }, { - "@id": "Person_Dominik_Gerold_Putz" + "@id": "#Person_Dominik_Gerold_Putz" }, { - "@id": "Person_Peter__Mayer" + "@id": "#Person_Peter__Mayer" }, { - "@id": "Person_Lena_J_Daumann" + "@id": "#Person_Lena_J_Daumann" } ], "description": "dataset for 1H nuclear magnetic resonance spectroscopy (1H NMR)\n\n", @@ -1172,21 +1303,21 @@ This folder contains two files: "@id": "1H_NMR-1H/1H.peak.jdx" } ], - "authors": [ + "author": [ { - "@id": "Person_Rachel_Janen" + "@id": "#Person_Rachel_Janen" }, { - "@id": "Person_Violeta_Aleksandrova_Vetsova" + "@id": "https://orcid.org/0000-0002-4631-377X" }, { - "@id": "Person_Dominik_Gerold_Putz" + "@id": "#Person_Dominik_Gerold_Putz" }, { - "@id": "Person_Peter__Mayer" + "@id": "#Person_Peter__Mayer" }, { - "@id": "Person_Lena_J_Daumann" + "@id": "#Person_Lena_J_Daumann" } ] }, @@ -1220,35 +1351,36 @@ This folder contains two files: { "@type": "CreativeWork", "@id": "https://doi.org/10.14272/GLVNZYODMKSEPS-ONEGZZNKSA-N/CHMO0000630", - "dct:conformsTo": { + "conformsTo": { "@id": "https://bioschemas.org/types/Study/0.3-DRAFT" }, "publisher": { - "@id": "Organization_chemotionrepository" + "@id": "#Organization_chemotionrepository" }, "dateCreated": "2022-11-02", "datePublished": "2022-11-02", "contributor": { - "@id": "Person_Rachel_Janen" + "@id": "#Person_Rachel_Janen" }, "citation": [], - "authors": [ + "author": [ { - "@id": "Person_Rachel_Janen" + "@id": "#Person_Rachel_Janen" }, { - "@id": "Person_Violeta_Aleksandrova_Vetsova" + "@id": "https://orcid.org/0000-0002-4631-377X" }, { - "@id": "Person_Dominik_Gerold_Putz" + "@id": "#Person_Dominik_Gerold_Putz" }, { - "@id": "Person_Peter__Mayer" + "@id": "#Person_Peter__Mayer" }, { - "@id": "Person_Lena_J_Daumann" + "@id": "#Person_Lena_J_Daumann" } - ] + ], + "name": "infrared absorption spectroscopy (IR)" }, { "@context": "https://schema.org", @@ -1256,32 +1388,31 @@ This folder contains two files: "@id": "IR-RQQIV-V/", "identifier": "CRD-25897", "url": "https://www.chemotion-repository.net/inchikey/GLVNZYODMKSEPS-ONEGZZNKSA-N/CHMO0000630", - "dct:conformsTo": { + "conformsTo": { "@id": "https://schema.org/Dataset" }, "publisher": { - "@id": "Organization_chemotionrepository" + "@id": "#Organization_chemotionrepository" }, - "license": "http://creativecommons.org/licenses/by-sa/4.0/", "name": "infrared absorption spectroscopy (IR)", "measurementTechnique": { "@id": "http://purl.obolibrary.org/obo/CHMO_0000630" }, "creator": [ { - "@id": "Person_Rachel_Janen" + "@id": "#Person_Rachel_Janen" }, { - "@id": "Person_Violeta_Aleksandrova_Vetsova" + "@id": "https://orcid.org/0000-0002-4631-377X" }, { - "@id": "Person_Dominik_Gerold_Putz" + "@id": "#Person_Dominik_Gerold_Putz" }, { - "@id": "Person_Peter__Mayer" + "@id": "#Person_Peter__Mayer" }, { - "@id": "Person_Lena_J_Daumann" + "@id": "#Person_Lena_J_Daumann" } ], "description": "dataset for infrared absorption spectroscopy (IR)\n\n", @@ -1297,33 +1428,33 @@ This folder contains two files: "@id": "IR-RQQIV-V/IRRQQIV-V.png" }, { - "@id": "IR-RQQIV-V/IR RAJ15.infer.json" + "@id": "IR-RQQIV-V/IR%20RAJ15.infer.json" }, { - "@id": "IR-RQQIV-V/IR RAJ15.peak.jdx" + "@id": "IR-RQQIV-V/IR%20RAJ15.peak.jdx" }, { - "@id": "IR-RQQIV-V/IR RAJ15.dx" + "@id": "IR-RQQIV-V/IR%20RAJ15.dx" }, { - "@id": "IR-RQQIV-V/IR RAJ15.peak.png" + "@id": "IR-RQQIV-V/IR%20RAJ15.peak.png" } ], - "authors": [ + "author": [ { - "@id": "Person_Rachel_Janen" + "@id": "#Person_Rachel_Janen" }, { - "@id": "Person_Violeta_Aleksandrova_Vetsova" + "@id": "https://orcid.org/0000-0002-4631-377X" }, { - "@id": "Person_Dominik_Gerold_Putz" + "@id": "#Person_Dominik_Gerold_Putz" }, { - "@id": "Person_Peter__Mayer" + "@id": "#Person_Peter__Mayer" }, { - "@id": "Person_Lena_J_Daumann" + "@id": "#Person_Lena_J_Daumann" } ] }, @@ -1346,35 +1477,36 @@ This folder contains two files: { "@type": "CreativeWork", "@id": "https://doi.org/10.14272/GLVNZYODMKSEPS-ONEGZZNKSA-N/CHMO0000498", - "dct:conformsTo": { + "conformsTo": { "@id": "https://bioschemas.org/types/Study/0.3-DRAFT" }, "publisher": { - "@id": "Organization_chemotionrepository" + "@id": "#Organization_chemotionrepository" }, "dateCreated": "2022-11-02", "datePublished": "2022-11-02", "contributor": { - "@id": "Person_Rachel_Janen" + "@id": "#Person_Rachel_Janen" }, "citation": [], - "authors": [ + "author": [ { - "@id": "Person_Rachel_Janen" + "@id": "#Person_Rachel_Janen" }, { - "@id": "Person_Violeta_Aleksandrova_Vetsova" + "@id": "https://orcid.org/0000-0002-4631-377X" }, { - "@id": "Person_Dominik_Gerold_Putz" + "@id": "#Person_Dominik_Gerold_Putz" }, { - "@id": "Person_Peter__Mayer" + "@id": "#Person_Peter__Mayer" }, { - "@id": "Person_Lena_J_Daumann" + "@id": "#Person_Lena_J_Daumann" } - ] + ], + "name": "high-resolution mass spectrometry (HRMS)" }, { "@context": "https://schema.org", @@ -1382,32 +1514,31 @@ This folder contains two files: "@id": "HRMS__28EI_29-202206031449161000/", "identifier": "CRD-25898", "url": "https://www.chemotion-repository.net/inchikey/GLVNZYODMKSEPS-ONEGZZNKSA-N/CHMO0000498", - "dct:conformsTo": { + "conformsTo": { "@id": "https://schema.org/Dataset" }, "publisher": { - "@id": "Organization_chemotionrepository" + "@id": "#Organization_chemotionrepository" }, - "license": "http://creativecommons.org/licenses/by-sa/4.0/", "name": "high-resolution mass spectrometry (HRMS)", "measurementTechnique": { "@id": "http://purl.obolibrary.org/obo/CHMO_0000498" }, "creator": [ { - "@id": "Person_Rachel_Janen" + "@id": "#Person_Rachel_Janen" }, { - "@id": "Person_Violeta_Aleksandrova_Vetsova" + "@id": "https://orcid.org/0000-0002-4631-377X" }, { - 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"dct:conformsTo": { + "conformsTo": { "@id": "https://bioschemas.org/types/Study/0.3-DRAFT" }, "publisher": { - "@id": "Organization_chemotionrepository" + "@id": "#Organization_chemotionrepository" }, "dateCreated": "2022-11-02", "datePublished": "2022-11-02", "contributor": { - "@id": "Person_Rachel_Janen" + "@id": "#Person_Rachel_Janen" }, "citation": [], - "authors": [ + "author": [ { - "@id": "Person_Rachel_Janen" + "@id": "#Person_Rachel_Janen" }, { - "@id": "Person_Violeta_Aleksandrova_Vetsova" + "@id": "https://orcid.org/0000-0002-4631-377X" }, { - "@id": "Person_Dominik_Gerold_Putz" + "@id": "#Person_Dominik_Gerold_Putz" }, { - "@id": "Person_Peter__Mayer" + "@id": "#Person_Peter__Mayer" }, { - "@id": "Person_Lena_J_Daumann" + "@id": "#Person_Lena_J_Daumann" } - ] + ], + "name": "13C nuclear magnetic resonance spectroscopy (13C NMR)" }, { "@context": "https://schema.org", @@ -1499,32 +1631,31 @@ This folder contains two files: "@id": "13C_NMR-13C/", "identifier": "CRD-25896", "url": "https://www.chemotion-repository.net/inchikey/GLVNZYODMKSEPS-ONEGZZNKSA-N/CHMO0000595", - "dct:conformsTo": { + "conformsTo": { "@id": "https://schema.org/Dataset" }, "publisher": { - "@id": "Organization_chemotionrepository" + "@id": "#Organization_chemotionrepository" }, - "license": "http://creativecommons.org/licenses/by-sa/4.0/", "name": "13C nuclear magnetic resonance spectroscopy (13C NMR)", "measurementTechnique": { "@id": "http://purl.obolibrary.org/obo/CHMO_0000595" }, "creator": [ { - "@id": "Person_Rachel_Janen" + "@id": "#Person_Rachel_Janen" }, { - "@id": "Person_Violeta_Aleksandrova_Vetsova" + "@id": "https://orcid.org/0000-0002-4631-377X" }, { - "@id": "Person_Dominik_Gerold_Putz" + "@id": "#Person_Dominik_Gerold_Putz" }, { - "@id": "Person_Peter__Mayer" + "@id": "#Person_Peter__Mayer" }, { - "@id": "Person_Lena_J_Daumann" + "@id": "#Person_Lena_J_Daumann" } ], "description": "dataset for 13C nuclear magnetic resonance spectroscopy (13C NMR)\n\n", @@ -1552,21 +1683,21 @@ This folder contains two files: "@id": "13C_NMR-13C/13C.jcamp" } ], - "authors": [ + "author": [ { - 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} - ], + "citation": { + "@id": "https://doi.org/10.1021/ja00408a067" + }, + "subjectOf": { + "@id": "https://doi.org/10.14272/GLVNZYODMKSEPS-ONEGZZNKSA-N.1" + }, "hasPart": [ { "@id": "1H_NMR-1H/" @@ -1645,16 +1782,16 @@ This folder contains two files: "@id": "IR-RQQIV-V/IRRQQIV-V.png" }, { - "@id": "IR-RQQIV-V/IR RAJ15.infer.json" + "@id": "IR-RQQIV-V/IR%20RAJ15.infer.json" }, { - "@id": "IR-RQQIV-V/IR RAJ15.peak.jdx" + "@id": "IR-RQQIV-V/IR%20RAJ15.peak.jdx" }, { - "@id": "IR-RQQIV-V/IR RAJ15.dx" + "@id": "IR-RQQIV-V/IR%20RAJ15.dx" }, { - "@id": "IR-RQQIV-V/IR RAJ15.peak.png" + "@id": "IR-RQQIV-V/IR%20RAJ15.peak.png" }, { "@id": "HRMS__28EI_29-202206031449161000/202206031449161000.jpg" @@ -1675,21 +1812,21 @@ This folder contains two files: "@id": "13C_NMR-13C/13C.jcamp" } ], - "authors": [ + "author": [ { - "@id": "Person_Rachel_Janen" + "@id": "#Person_Rachel_Janen" }, { - "@id": "Person_Violeta_Aleksandrova_Vetsova" + "@id": "https://orcid.org/0000-0002-4631-377X" }, { - "@id": "Person_Dominik_Gerold_Putz" + "@id": "#Person_Dominik_Gerold_Putz" }, { - "@id": "Person_Peter__Mayer" + "@id": "#Person_Peter__Mayer" }, { - "@id": "Person_Lena_J_Daumann" + "@id": "#Person_Lena_J_Daumann" } ] }, @@ -1700,18 +1837,17 @@ This folder contains two files: "@id": "./" }, "conformsTo": { - "@id": "https://w3id.org/ro/crate/1.1" + "@id": "https://w3id.org/ro/crate/1.2" }, "version": "1.0", - "additionalType": "https://purl.archive.org/purl/elnconsortium/eln-spec/1.1", "datePublished": "2025-11-21T13:19:43.554504", "dateCreated": "2025-11-21T13:19:43.554516", "sdPublisher": { - "@id": "GOLD_STANDARD_PUBLISHER" + "@id": "https://orcid.org/0000-0003-0930-082X" } }, { - "@id": "GOLD_STANDARD_PUBLISHER", + "@id": "https://orcid.org/0000-0003-0930-082X", "@type": "Person", "givenName": "Steffen", "familyName": "Brinckmann", @@ -1724,7 +1860,7 @@ This folder contains two files: "@id": "1H_NMR-1H/1H.peak.png", "@type": "File", "name": "1H.peak.png", - "sha256": "3f716f9ace0138393528585f4be10a15", + "sha256": "0133d911b1d8782ea6f6ae5e2f0b5c71b3a161228a7f60f3f9fe00b80dc65c3b", "encodingFormat": "image/png", "contentSize": "54255" }, @@ -1732,7 +1868,7 @@ This folder contains two files: "@id": "1H_NMR-1H/1H.jpeg", "@type": "File", "name": "1H.jpeg", - "sha256": "fe6477d2f26890e50ac129f238f93c79", + "sha256": "8064499073f4eeb2ac90689b0a6e5674b53479ff7b885dec247b5f578660c4ec", "encodingFormat": "image/jpeg", "contentSize": "638717" }, @@ -1740,7 +1876,7 @@ This folder contains two files: "@id": "1H_NMR-1H/1H.jcamp", "@type": "File", "name": "1H.jcamp", - "sha256": "2dfb64df27339cfe53a981b51a661122", + "sha256": "b323ccd783d7f2cc0708c465fdeee477cf46ae0acc56830fe413cab5872a439d", "encodingFormat": "text/plain", "contentSize": "619889" }, @@ -1748,7 +1884,7 @@ This folder contains two files: "@id": "1H_NMR-1H/1H.peak.jdx", "@type": "File", "name": "1H.peak.jdx", - "sha256": "eeed3522816561f91392547509d05b93", + "sha256": "1d424f7035dd72aa55772bcfca3a5ce811e76ac2956bc2bccc961d9ebf665488", "encodingFormat": "text/plain", "contentSize": "662028" }, @@ -1756,39 +1892,39 @@ This folder contains two files: "@id": "IR-RQQIV-V/IRRQQIV-V.png", "@type": "File", "name": "IRRQQIV-V.png", - "sha256": "dadfa0ae152d4b4f24e52a93edd898b8", + "sha256": "cd9cdeaceaa9d536e1f5dd8f777a9a51f997795ad8520768db4a7f0898bab77d", "encodingFormat": "image/png", "contentSize": "24907" }, { - "@id": "IR-RQQIV-V/IR RAJ15.infer.json", + "@id": "IR-RQQIV-V/IR%20RAJ15.infer.json", "@type": "File", "name": "IR RAJ15.infer.json", - "sha256": "RAJ15.infer.json", + "sha256": "cfeef651bf454a2b2b768f087e3816798c75a02519e8def30aef741866e5c813", "encodingFormat": "application/json", "contentSize": "8712" }, { - "@id": "IR-RQQIV-V/IR RAJ15.peak.jdx", + "@id": "IR-RQQIV-V/IR%20RAJ15.peak.jdx", "@type": "File", "name": "IR RAJ15.peak.jdx", - "sha256": "RAJ15.peak.jdx", + "sha256": "571166e048e21051c56f3f5aea988c70f4ee4df0c6dfb9862a5d982b6a8803cd", "encodingFormat": "text/plain", "contentSize": "34894" }, { - "@id": "IR-RQQIV-V/IR RAJ15.dx", + "@id": "IR-RQQIV-V/IR%20RAJ15.dx", "@type": "File", "name": "IR RAJ15.dx", - "sha256": "RAJ15.dx", + "sha256": "6846d77eb7ada1ccece9ff2c1bf3f80be09de883bbfaf8f5a126240cf146bc8c", "encodingFormat": "text/plain", "contentSize": "43237" }, { - "@id": "IR-RQQIV-V/IR RAJ15.peak.png", + "@id": "IR-RQQIV-V/IR%20RAJ15.peak.png", "@type": "File", "name": "IR RAJ15.peak.png", - "sha256": "RAJ15.peak.png", + "sha256": "a6a85ea22881c78f1901f47c1357395795b521ab1ddfc529d0c8f8ea3f225140", "encodingFormat": "image/png", "contentSize": "103380" }, @@ -1796,7 +1932,7 @@ This folder contains two files: "@id": "HRMS__28EI_29-202206031449161000/202206031449161000.jpg", "@type": "File", "name": "202206031449161000.jpg", - "sha256": "2fbe8838353c27851c6bb82ac97faee8", + "sha256": "a548da43182babee3dde99857238cc1f75fb206ddd84795b6f6cd04feebb660c", "encodingFormat": "image/jpeg", "contentSize": "606186" }, @@ -1804,7 +1940,7 @@ This folder contains two files: "@id": "13C_NMR-13C/13C.edit.png", "@type": "File", "name": "13C.edit.png", - "sha256": "05d6294393ad34b27fe0b7d646e67ba7", + "sha256": "1f13df5875f528e530fd4ad103af355002d4cfc3263747f587aada1b5629b0e9", "encodingFormat": "image/png", "contentSize": "51616" }, @@ -1812,7 +1948,7 @@ This folder contains two files: "@id": "13C_NMR-13C/13C.jpeg", "@type": "File", "name": "13C.jpeg", - "sha256": "2551a4d100498f068723201da7b1d5e9", + "sha256": "20f9bb8052fed15b104d3cd80ab2671d85afdc3b30979272579471035d62284a", "encodingFormat": "image/jpeg", "contentSize": "685470" }, @@ -1820,7 +1956,7 @@ This folder contains two files: "@id": "13C_NMR-13C/13C.infer.json", "@type": "File", "name": "13C.infer.json", - "sha256": "42d64939ddc5990a59bb0f23b78be98f", + "sha256": "eda051b07ef1771b57ff7a23cbe75d4ac9986ec1e0b5bbd5c76c4a6c9f6aad5b", "encodingFormat": "application/json", "contentSize": "13074" }, @@ -1828,7 +1964,7 @@ This folder contains two files: "@id": "13C_NMR-13C/13C.edit.jdx", "@type": "File", "name": "13C.edit.jdx", - "sha256": "a52b09233f2818f096c11b03021ed3f7", + "sha256": "d7dfd0a08eeaff82fa6e045b5ca250732d428b29433ac7fd348208d302f08f88", "encodingFormat": "text/plain", "contentSize": "471185" }, @@ -1836,9 +1972,37 @@ This folder contains two files: "@id": "13C_NMR-13C/13C.jcamp", "@type": "File", "name": "13C.jcamp", - "sha256": "2a4bc1adcf8492d4f4eb94130ab05056", + "sha256": "8fd7b9dc83cea7c892b37821fa79d284cabe509fae10f8c0dfbc81eccfdcd9ef", "encodingFormat": "text/plain", "contentSize": "567966" + }, + { + "@id": "https://w3id.org/ro/crate/1.2", + "@type": [ + "CreativeWork", + "Profile" + ], + "name": "RO-Crate 1.2 Specification" + }, + { + "@id": "https://purl.archive.org/purl/elnconsortium/eln-spec/1.2+20260923", + "@type": [ + "CreativeWork", + "Profile" + ], + "name": "ELN-File Format 1.2+20260923 Specification" + }, + { + "@id": "http://creativecommons.org/licenses/by-sa/4.0/", + "@type": "CreativeWork", + "name": "Creative Commons Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)", + "description": "Allows sharing and adapting the material for any purpose, provided appropriate credit is given and derivatives are distributed under the same license." + }, + { + "@id": "https://www.gnu.org/licenses/agpl-3.0.en.html", + "@type": "CreativeWork", + "name": "GNU Affero General Public License v3.0 (AGPL-3.0)", + "description": "Copyleft free-software license; modified versions offered over a network must make their source code available under the same license." } ] } diff --git a/examples/PASTA/SKIP_CI b/examples/PASTA/SKIP_CI deleted file mode 100644 index e69de29..0000000 diff --git a/examples/PASTA/goldStandard.eln b/examples/PASTA/goldStandard.eln index 1426dc8..187d629 100644 Binary files a/examples/PASTA/goldStandard.eln and b/examples/PASTA/goldStandard.eln differ