project.json

{
    "project": {
        "DEG": "no",
        "MINCOUNTGENEJUNCTIONS": "5",
        "MINCOUNTGENES": "5",
        "MINCOUNTJUNCTIONS": "5",
        "MINSAMPLES": "2",
        "PICARDSTRAND": "NONE",
        "SJDBOVERHANG": "100",
        "STARDIR": "/fdb/STAR_2.4.2a/GENCODE/Gencode_human/release_19/genes-100",
        "STARSTRANDCOL": "2",
        "STRANDED": "0",
        "TRIM": "yes",
        "analyst": "",
        "annotation": "hg19",
        "batchsize": "20",
        "binset": "standard-bin",
        "cluster": "cluster_medium.json",
        "contrasts": {
            "rcontrasts": "na",
            "rgroups": "na",
            "rlabels": "na",
            "rsamps": "na"
        },
        "custom": [],
        "datapath": "",
        "description": "Enter CCBR Project Description and Notes here.\n",
        "efiletype": "fastq",
        "filetype": "fastq.gz",
        "flowcellid": "stats",
        "id": "project",
        "organism": "",
        "pairs": {
            "na": "na"
        },
        "pfamily": "exomeseq",
        "pi": "",
        "pipeline": "initialqc",
        "platform": "Illumina",
        "poc": "",
        "rgid": {},
        "samples": {
            "na": "na"
        },
        "smparams": [],
        "targetspath": "/data/CCBR_Pipeliner/db/PipeDB/lib/SS_v5_UTRs_hg19.bed",
        "technique": "",
        "units": {},
        "username": "",
        "version": "1.0",
        "workpath": ""
    }
}