runDLKcat(): use DLKcat.tsv in a different directory

[edkerk]

Discussed in #389

^{Originally posted by PkiwiBird August 8, 2024}
It is possible to modify the directory where DLKcat.tsv is stored, with:
writeDLKcatInput(ecLiverMl,[],[],[],'path_2_light_DLKcat.tsv',true)
but how to use that file as input for runDLKcat() ?
This is useful if we want to save the files of DLKcat.tsv for the full and light models separately, as they are different.
runDLKcat() uses modelAdapter.params.
Is there a way to run runDLKcat() using as input DLKcat.tsv stored in a different directory than modelAdapter.params?

[edkerk]

runDLKcat has the filename and path hard-coded in the python command to run DLKcat. It should indeed be possible to tell runDLKcat which file to use as an input (and the output file as well). This can be implemented, but it will take a little while before I have time to do this.

As a workaround you could use MATLAB's movefile command to rename the input file just before running runDLKcat, and rename it again after runDLKcat is done.

[edkerk]

@PkiwiBird, does the modified runDLKcat in #394 work for you?