diff --git a/README.md b/README.md index 7ef632d..bb34af0 100644 --- a/README.md +++ b/README.md @@ -55,6 +55,10 @@ remotes::install_github("ShixiangWang/ascat@v3-for-gcap-v1", subdir = "ASCAT") > updates in processing your data, please refer to for generating the required > allele-specific copy number data, and refer to [`?gcap.ASCNworkflow()`](https://shixiangwang.github.io/gcap/reference/gcap.ASCNworkflow.html) for downstream analysis. +### Alternatives to ASCAT + +For the latest version of GCAP, [sequenza](https://shixiangwang.github.io/gcap/reference/gcap.workflow.seqz.html) or [facets](https://shixiangwang.github.io/gcap/reference/gcap.workflow.facets.html) are supported for preprocessing the bam data, please refer to the provided links for usage. + ### Install GCAP (required) Install **gcap** in R console: