Remove Tapir

Author: ChrisRackauckas

benchmarks/AutomaticDifferentiation/JuliaAD.jmd

@@ -5,7 +5,7 @@ author: Guillaume Dalle and Chris Rackauckas
 
 ```julia
 using DifferentiationInterface, DifferentiationInterfaceTest, DataFrames, DataFramesMeta
-import Enzyme, Zygote, Tapir
+import Enzyme, Zygote, Mooncake
 import Markdown, PrettyTables, Printf
 
 function paritytrig(x::AbstractVector{T}) where {T}
@@ -22,7 +22,7 @@ end
 
 backends = [
     AutoEnzyme(mode=Enzyme.Reverse),
-    AutoTapir(safe_mode=false),
+    AutoMooncake(safe_mode=false),
     AutoZygote(),
 ];
 

benchmarks/AutomaticDifferentiation/Manifest.toml

@@ -2,7 +2,7 @@
 
 julia_version = "1.10.9"
 manifest_format = "2.0"
-project_hash = "2f8589a6d69c1295560560ec337d9570e195b2ce"
+project_hash = "2983b00da262042be0b35f9018f9bdaee47ee5fc"
 
 [[deps.ADTypes]]
 git-tree-sha1 = "e2478490447631aedba0823d4d7a80b2cc8cdb32"
@@ -236,9 +236,9 @@ version = "0.6.0"
 
 [[deps.ChainRules]]
 deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"]
-git-tree-sha1 = "204e9b212da5cc7df632b58af8d49763383f47fa"
+git-tree-sha1 = "224f9dc510986549c8139def08e06f78c562514d"
 uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
-version = "1.72.4"
+version = "1.72.5"
 
 [[deps.ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra"]
@@ -524,12 +524,6 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272"
 uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
 version = "1.15.1"
 
-[[deps.DiffTests]]
-deps = ["LinearAlgebra", "SparseArrays", "Statistics"]
-git-tree-sha1 = "b92beb1933df01bf4915d3a05e54c2a0aad312c7"
-uuid = "de460e47-3fe3-5279-bb4a-814414816d5d"
-version = "0.1.2"
-
 [[deps.DifferentiationInterface]]
 deps = ["ADTypes", "LinearAlgebra"]
 git-tree-sha1 = "c8d85ecfcbaef899308706bebdd8b00107f3fb43"
@@ -689,9 +683,9 @@ version = "1.0.5"
 
 [[deps.Enzyme]]
 deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "InteractiveUtils", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "PrecompileTools", "Preferences", "Printf", "Random", "SparseArrays"]
-git-tree-sha1 = "ef9aa10938d97cd42c524482eda5c523ec4bf0d5"
+git-tree-sha1 = "626bc1d9fed8b23c6dfb4e28aa8ab2206c648727"
 uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9"
-version = "0.13.49"
+version = "0.13.50"
 
     [deps.Enzyme.extensions]
     EnzymeBFloat16sExt = "BFloat16s"
@@ -710,19 +704,19 @@ version = "0.13.49"
     StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
 
 [[deps.EnzymeCore]]
-git-tree-sha1 = "7d7822a643c33bbff4eab9c87ca8459d7c688db0"
+git-tree-sha1 = "8272a687bca7b5c601c0c24fc0c71bff10aafdfd"
 uuid = "f151be2c-9106-41f4-ab19-57ee4f262869"
-version = "0.8.11"
+version = "0.8.12"
 weakdeps = ["Adapt"]
 
     [deps.EnzymeCore.extensions]
     AdaptExt = "Adapt"
 
 [[deps.Enzyme_jll]]
 deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "168b7e5924b1fdb14bb246e7263438bb26d040c5"
+git-tree-sha1 = "9599f53973676cdb42f177d7c34b8374a9a68c42"
 uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef"
-version = "0.0.181+0"
+version = "0.0.182+0"
 
 [[deps.EpollShim_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -1029,9 +1023,9 @@ version = "0.3.28"
 
 [[deps.IJulia]]
 deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "JSON", "Logging", "Markdown", "MbedTLS", "Pkg", "Printf", "REPL", "Random", "SoftGlobalScope", "UUIDs", "ZMQ"]
-git-tree-sha1 = "5bea4d841d5db750a1bb5ccdc37b2759dfa80066"
+git-tree-sha1 = "9e60d328aa8060368d6dadd24b644d0ebaf0c1cb"
 uuid = "7073ff75-c697-5162-941a-fcdaad2a7d2a"
-version = "1.28.1"
+version = "1.29.0"
 
 [[deps.IRTools]]
 deps = ["InteractiveUtils", "MacroTools"]
@@ -1056,9 +1050,9 @@ uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9"
 version = "0.1.5"
 
 [[deps.InlineStrings]]
-git-tree-sha1 = "6a9fde685a7ac1eb3495f8e812c5a7c3711c2d5e"
+git-tree-sha1 = "8594fac023c5ce1ef78260f24d1ad18b4327b420"
 uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48"
-version = "1.4.3"
+version = "1.4.4"
 
     [deps.InlineStrings.extensions]
     ArrowTypesExt = "ArrowTypes"
@@ -1517,11 +1511,6 @@ git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d"
 uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
 version = "1.2.0"
 
-[[deps.MistyClosures]]
-git-tree-sha1 = "2e96762b9ebf3a97211e0424e488b2fde26cc282"
-uuid = "dbe65cb8-6be2-42dd-bbc5-4196aaced4f4"
-version = "1.0.3"
-
 [[deps.Mmap]]
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 
@@ -2046,9 +2035,9 @@ version = "1.4.3"
 
 [[deps.Plots]]
 deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"]
-git-tree-sha1 = "809ba625a00c605f8d00cd2a9ae19ce34fc24d68"
+git-tree-sha1 = "28ea788b78009c695eb0d637587c81d26bdf0e36"
 uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
-version = "1.40.13"
+version = "1.40.14"
 
     [deps.Plots.extensions]
     FileIOExt = "FileIO"
@@ -2370,9 +2359,9 @@ version = "1.0.0"
 
 [[deps.SciMLSensitivity]]
 deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "Enzyme", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "Functors", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEqCore", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLJacobianOperators", "SciMLStructures", "StaticArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tracker", "Zygote"]
-git-tree-sha1 = "22402dfac0823491e0d3ae3b916940e6761f6e86"
+git-tree-sha1 = "1881447dcf869773898a2443008a1de9b6221ec7"
 uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1"
-version = "7.84.0"
+version = "7.85.0"
 
     [deps.SciMLSensitivity.extensions]
     SciMLSensitivityMooncakeExt = "Mooncake"
@@ -2686,26 +2675,6 @@ git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
 version = "1.12.1"
 
-[[deps.Tapir]]
-deps = ["ADTypes", "ChainRulesCore", "DiffRules", "DiffTests", "ExprTools", "Graphs", "InteractiveUtils", "LinearAlgebra", "MistyClosures", "Random", "Setfield", "Test"]
-git-tree-sha1 = "9bb62e5f35f8df9badf635235f5c05ba33e4841e"
-uuid = "07d77754-e150-4737-8c94-cd238a1fb45b"
-version = "0.2.51"
-
-    [deps.Tapir.extensions]
-    TapirCUDAExt = "CUDA"
-    TapirDynamicPPLExt = "DynamicPPL"
-    TapirJETExt = "JET"
-    TapirLogDensityProblemsADExt = "LogDensityProblemsAD"
-    TapirSpecialFunctionsExt = "SpecialFunctions"
-
-    [deps.Tapir.weakdeps]
-    CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
-    DynamicPPL = "366bfd00-2699-11ea-058f-f148b4cae6d8"
-    JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b"
-    LogDensityProblemsAD = "996a588d-648d-4e1f-a8f0-a84b347e47b1"
-    SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b"
-
 [[deps.Tar]]
 deps = ["ArgTools", "SHA"]
 uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
@@ -3046,9 +3015,9 @@ version = "0.4.14"
 
 [[deps.ZMQ]]
 deps = ["FileWatching", "PrecompileTools", "Sockets", "ZeroMQ_jll"]
-git-tree-sha1 = "33333bdded3835f81b9b6353da9243dc4ec62e0f"
+git-tree-sha1 = "2d060e1f014c07561817bf6f3c0eb66b309e04bd"
 uuid = "c2297ded-f4af-51ae-bb23-16f91089e4e1"
-version = "1.4.0"
+version = "1.4.1"
 
 [[deps.ZeroMQ_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "libsodium_jll"]
@@ -3069,9 +3038,9 @@ version = "1.5.7+1"
 
 [[deps.Zygote]]
 deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"]
-git-tree-sha1 = "f0ecdb1c4c6ade4364ab55e6c5d2f5b1eeed06ad"
+git-tree-sha1 = "a29cbf3968d36022198bcc6f23fdfd70f7caf737"
 uuid = "e88e6eb3-aa80-5325-afca-941959d7151f"
-version = "0.7.9"
+version = "0.7.10"
 
     [deps.Zygote.extensions]
     ZygoteAtomExt = "Atom"
@@ -3146,9 +3115,9 @@ version = "1.28.1+0"
 
 [[deps.libpng_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
-git-tree-sha1 = "002748401f7b520273e2b506f61cab95d4701ccf"
+git-tree-sha1 = "cd155272a3738da6db765745b89e466fa64d0830"
 uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
-version = "1.6.48+0"
+version = "1.6.49+0"
 
 [[deps.libsodium_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]

benchmarks/AutomaticDifferentiation/Project.toml

@@ -18,7 +18,6 @@ ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
 SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344"
 SciMLSensitivity = "1ed8b502-d754-442c-8d5d-10ac956f44a1"
 StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
-Tapir = "07d77754-e150-4737-8c94-cd238a1fb45b"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
 Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
@@ -40,6 +39,5 @@ ReverseDiff = "1"
 SciMLBenchmarks = "0.1"
 SciMLSensitivity = "7"
 StaticArrays = "1"
-Tapir = "0.2.26"
 Tracker = "0.2"
 Zygote = "0.6, 0.7"