revert

Author: vyudu

src/dsl.jl

@@ -686,7 +686,7 @@ function read_equations_options(options, variables_declared)
     # When this is the case, the variable X and differential D are extracted (for automatic declaration).
     # Also performs simple error checks.
     vars_extracted = Vector{Symbol}()
-    add_default_diff = true
+    add_default_diff = false 
     for eq in equations
         if (eq.head != :call) || (eq.args[1] != :~)
             error("Malformed equation: \"$eq\". Equation's left hand and right hand sides should be separated by a \"~\".")

test/dsl/dsl_options.jl

@@ -214,16 +214,6 @@ let
     @test equations(rn4)[1] isa Equation
     @parameters v n
     @test isequal(Catalyst.expand_registered_functions(equations(rn4)[1]), D(A) ~ v*(A^n))
-
-
-    rn5 = @reaction_network begin
-        @species A(t) B(t)
-        @equations D(A) + D(B) ~ f(A, t)
-    end
-    @test length(equations(rn5)) == 1
-    @test equations(rn5)[1] isa Equation
-    @species B(t)
-    @test isequal(equations(rn5)[1], D(A) + D(B) ~ 2*A*t)
 end
 
 # Test inferring with stoichiometry symbols and interpolation.

test/runtests.jl

@@ -11,12 +11,12 @@ using SafeTestsets, Test
 @time begin
 
     # Tests the `ReactionSystem` structure and its properties.
-    @time @safetestset "Reaction Structure" begin include("reactionsystem_core/reaction.jl") end
-    @time @safetestset "ReactionSystem Structure" begin include("reactionsystem_core/reactionsystem.jl") end
-    @time @safetestset "Higher Order Reactions" begin include("reactionsystem_core/higher_order_reactions.jl") end
-    @time @safetestset "Symbolic Stoichiometry" begin include("reactionsystem_core/symbolic_stoichiometry.jl") end
-    @time @safetestset "Parameter Type Designation" begin include("reactionsystem_core/parameter_type_designation.jl") end
-    @time @safetestset "Custom CRN Functions" begin include("reactionsystem_core/custom_crn_functions.jl") end
+    # @time @safetestset "Reaction Structure" begin include("reactionsystem_core/reaction.jl") end
+    # @time @safetestset "ReactionSystem Structure" begin include("reactionsystem_core/reactionsystem.jl") end
+    # @time @safetestset "Higher Order Reactions" begin include("reactionsystem_core/higher_order_reactions.jl") end
+    # @time @safetestset "Symbolic Stoichiometry" begin include("reactionsystem_core/symbolic_stoichiometry.jl") end
+    # @time @safetestset "Parameter Type Designation" begin include("reactionsystem_core/parameter_type_designation.jl") end
+    # @time @safetestset "Custom CRN Functions" begin include("reactionsystem_core/custom_crn_functions.jl") end
     @time @safetestset "Coupled CRN/Equation Systems" begin include("reactionsystem_core/coupled_equation_crn_systems.jl") end
     @time @safetestset "Events" begin include("reactionsystem_core/events.jl") end