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BUILDING.md

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Building Region-Templates.js

Preparing workspace

Assuming:

for better organization, your workspace should look like

    /workspace
        - /libs
            - /ah
                - /activeharmony-4.6.0
            - hadoopgis
            - /itk
                - /InsightToolkit-4.11.0
                - /build
            - /ns
                - /nscale
                - /build
            - /opencv
                - /opencv-2.4.9
                - /build
            - /yi
                - /yi-src-multi
                - /build
        - /project
            - /region-templates
            - build
        - /imgs

after everythins is downloaded, clone the repository into /project folder

Installing Opencv

Requirements as noted on the Opencv install guide

compiler

sudo apt-get install build-essential

required

sudo apt-get install cmake git libgtk2.0-dev pkg-config libavcodec-dev libavformat-dev libswscale-dev

optional

sudo apt-get install python-dev python-numpy libtbb2 libtbb-dev libjpeg-dev libpng-dev libtiff-dev libjasper-dev libdc1394-22-dev

download file and move to the /opencv folder

To build and install

inside /opencv folder

unzip opencv-2.4.9.zip
cd build
cmake -D CMAKE_BUILD_TYPE=RELEASE -D CMAKE_INSTALL_PREFIX=/usr/local ../opencv-2.4.9/
make
sudo make install

Installing InsightToolkit

download file and move to the /itk folder

To build and install

inside /itk folder

tar -vxzf InsightToolkit-4.11.0.tar.gz
cd build
ccmake ../InsightToolkit-4.11.0

on the interface

  • press c to configure
  • press t to toggle advanced mode
  • turn on BUILD_SHARED_LIBS
  • turn on MODULE_ITKVideoBridgeOpenCV
  • press c to configure
  • press g to generate

then build

make

Installing Nscale

clone the repository inside /ns folder

To build and install

inside /ns folder

cd nscale
git checkout daac7ff
cd ../build
ccmake ../nscale

on the interface

  • press c to configure
  • turn on NS_SEGMENT
  • turn on NS_NORMALIZATION
  • turn on NS_FEATURE
  • press c to configure
  • press g to generate

then build

make

NOTE: it may give errors of vars NSCALE_VERSION_MAJOR and NSCALE_VERSION_MINOR, press e to continue and ignore.

Installing Yi's library

inside /workspace folder

cp project/region-templates/runtime/regiontemplates/external-src/yi-src-multi.tar.gz ./libs/yi/

To build and install

inside /yi folder

tar -vxzf yi-src-multi.tar.gz.tar.gz
cd build
ccmake ../yi-src-multi

on the interface

  • press c to configure
  • press e to ignore errors and continue
  • fill ITK_DIR to your ITK installation
  • turn off build_mainTileAndSegmentWSINuclei
  • press c to configure
  • turn on build_mainSegmentSmallImage
  • press c to configure
  • press g to generate

then build

make

Installing Active Harmony

download file and move to the /ah folder

To build and install

inside /ah folder

tar -vxzf ah-4.6.0.tar.gz
cd activeharmony-4.6.0 
make CXXFLAGS=-fPIC CFLAGS=-fPIC install

export full path to the /ah/activeharmony-4.6.0

something like

export HARMONY_HOME=/home/$USER/Desktop/workspace/ah/activeharmony-4.6.0

Installing Hadoop-GIS

inside /workspace folder

cp project/region-templates/runtime/regiontemplates/external-src/hadoopgis/ ./libs/

To build and install

inside /hadoopgis folder

cd installer
sudo bash installhadoopgis.sh

NOTE: it builds to /build folder inside /hadoopgis

Installing Region-Templates

To build

inside /project folder

cd build
ccmake ../region-templates/runtime

on the interface

  • press c to configure
  • turn on BUILD_SAMPLE_APPLICATIONS
  • turn on RTEMPLATES_EXAMPLE
  • turn on USE_REGION_TEMPLATES
  • press c to configure
  • press e to ignore errors and continue
  • fill NSCALE_BUILD_DIR to your NSCALE build
  • fill NSCALE_SRC_DIR to your NSCALE source
  • press c to configure
  • turn on RT_TUNING_NSCALE_EXAMPLE
  • turn on RT_TUNING_YI_EXAMPLE
  • turn on USE_ACTIVE_HARMONY
  • turn on USE_HADOOPGIS
  • press c to configure
  • press e to ignore errors and continue
  • fill AH_SRC_DIR to your active harmony source
  • fill HADOOPGIS_BUILD_DIR to your hadoopgis build
  • fill ITK_DIR to your ITK installation
  • fill YI_BUILD_DIR to your YI build
  • fill YI_SRC_DIR to your YI source
  • press c to configure
  • press g to generate

then build

make