The Export API provides HTTP endpoints to control the copying of EHR data from the OMOP extract to its destination (eg. FTPS). It also uploads DICOM data to its destination after it has been processed by the Imaging API and orthanc(s). It no longer accepts messages from rabbitmq.
First, make sure you have postgresql installed on your system.
On macOS:
brew install postgresqlOn Ubuntu:
sudo apt install postgresqlOn Windows, follow these instructions.
Then install the Python dependencies with
python -m pip install -e ../pixl_core/ -e .python -m pip install -e ../pixl_core/ -e ".[test]"
pytestUsage should be from the CLI driver, which calls the HTTP endpoints.
- The height/weight/GCS value is extracted only within a 24 h time window