merfish-segmentation/environment.yml at master · Roth-Lab/merfish-segmentation · GitHub

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name: merfish
channels:
  - defaults
dependencies:
  - ca-certificates=2021.1.19=hecd8cb5_0
  - certifi=2020.12.5=py38hecd8cb5_0
  - libcxx=10.0.0=1
  - libedit=3.1.20191231=h1de35cc_1
  - libffi=3.3=hb1e8313_2
  - ncurses=6.2=h0a44026_1
  - openssl=1.1.1i=h9ed2024_0
  - pip=20.3.3=py38hecd8cb5_0
  - python=3.8.5=h26836e1_1
  - readline=8.0=h1de35cc_0
  - setuptools=52.0.0=py38hecd8cb5_0
  - sqlite=3.33.0=hffcf06c_0
  - tk=8.6.10=hb0a8c7a_0
  - wheel=0.36.2=pyhd3eb1b0_0
  - xz=5.2.5=h1de35cc_0
  - zlib=1.2.11=h1de35cc_3
  - pip:
    - absl-py==0.11.0
    - appnope==0.1.2
    - astunparse==1.6.3
    - backcall==0.2.0
    - cachetools==4.2.1
    - chardet==4.0.0
    - csbdeep==0.6.1
    - cycler==0.10.0
    - decorator==4.4.2
    - flatbuffers==1.12
    - gast==0.3.3
    - google-auth==1.24.0
    - google-auth-oauthlib==0.4.2
    - google-pasta==0.2.0
    - grpcio==1.32.0
    - h5py==2.10.0
    - idna==2.10
    - imagecodecs==2021.1.11
    - imagecodecs-lite==2020.1.31
    - imageio==2.9.0
    - ipykernel==5.4.3
    - ipython==7.19.0
    - ipython-genutils==0.2.0
    - jedi==0.18.0
    - jupyter-client==6.1.11
    - jupyter-core==4.7.0
    - keras==2.3.1
    - keras-applications==1.0.8
    - keras-preprocessing==1.1.2
    - kiwisolver==1.3.1
    - llvmlite==0.35.0
    - markdown==3.3.3
    - matplotlib==3.3.3
    - networkx==2.5
    - numba==0.52.0
    - numpy==1.19.5
    - oauthlib==3.1.0
    - opencv-python==4.5.1.48
    - opt-einsum==3.3.0
    - parso==0.8.1
    - pexpect==4.8.0
    - pickleshare==0.7.5
    - pillow==8.1.0
    - prompt-toolkit==3.0.14
    - protobuf==3.14.0
    - ptyprocess==0.7.0
    - pyasn1==0.4.8
    - pyasn1-modules==0.2.8
    - pygments==2.7.4
    - pyparsing==2.4.7
    - python-dateutil==2.8.1
    - pywavelets==1.1.1
    - pyyaml==5.4.1
    - pyzmq==21.0.1
    - requests==2.25.1
    - requests-oauthlib==1.3.0
    - rsa==4.7
    - scikit-image==0.18.1
    - scipy==1.6.0
    - six==1.15.0
    - stardist==0.6.1
    - tensorboard==2.4.1
    - tensorboard-plugin-wit==1.8.0
    - tensorflow==2.4.1
    - tensorflow-estimator==2.4.0
    - termcolor==1.1.0
    - tifffile==2021.1.14
    - tornado==6.1
    - tqdm==4.56.0
    - traitlets==5.0.5
    - typing-extensions==3.7.4.3
    - urllib3==1.26.2
    - wcwidth==0.2.5
    - werkzeug==1.0.1
    - wrapt==1.12.1
prefix: /Users/annasong/anaconda3/envs/merfish