Merge pull request #11 from yarikoptic/enh-perms

ENH: executable permissions for the script + adjusted info messages

Author: satra

Simple_Prep.sh

@@ -1,23 +1,26 @@
-#!/bin/bash                                                                                                                    
-# Setup standalone python environment                                                                                          
-echo "Setup standalone python environment"                                                                                     
-                                                                                                                               
-if [ `uname` == 'Darwin' ]; then                                                                                               
+#!/bin/bash
+# Setup standalone python environment
+
+echo "Setting up standalone conda Python environment"
+
+if [ `uname` == 'Darwin' ]; then
     curl -sSL -o miniconda.sh http://repo.continuum.io/miniconda/Miniconda2-latest-MacOSX-x86_64.sh
-else                                                                                                                           
+else
     curl -sSL -o miniconda.sh http://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
-fi                                                                                                                             
-chmod +x miniconda.sh                                                                                                          
-./miniconda.sh -b                                                                                                              
-export PATH=$HOME/miniconda2/bin:$PATH                                                                                         
-conda config --add channels conda-forge                                                                                        
-                                                                                                                               
-# Get the repo and Create the specific versioned python environment                                                            
-echo "Get the repo and Create the specific versioned python environment"                                                       
-                                                                                                                               
-curl -OksSL https://github.com/ReproNim/simple_workflow/archive/master.zip                                                      
-unzip master.zip                                                                                                               
-cd simple_workflow-master                                                                                                      
-conda env create -f environment.yml                                                                                            
-source activate bh_demo                                                                                                        
+fi
+chmod +x miniconda.sh
+./miniconda.sh -b
+export PATH=$HOME/miniconda2/bin:$PATH
+conda config --add channels conda-forge
+
+# Get the repo and Create the specific versioned python environment
+echo "Getting the analysis repo"
+
+curl -OksSL https://github.com/ReproNim/simple_workflow/archive/master.zip
+unzip master.zip
+cd simple_workflow-master
+
+echo "Creating specificly versioned Python environment"
+conda env create -f environment.yml
+source activate bh_demo
 pip install https://github.com/satra/prov/archive/enh/rdf-1.x.zip

check_output.py

@@ -1,3 +1,5 @@
+#/usr/bin/env python
+
 import json
 import os
 from glob import glob