Ccd clc prd processing: Added version number (#18)

* corrected the doc string

* changed BM to CLC

* added methods for processing PRDs

* changed res_id to be atom property

* added residue info in PDB format

* reason why res_id is not set as residue number

* added residue number in PDB format

* methods for reading cif file of covalently linked components

* added method to get prdcc code from prd code

* changed doc string of read_bm_components_file

* added to_xml_xml method

* corrected get_conformer and has_degenerated_conformer

* corrected typo in atom

* removed casefolds

* pinned sphinx <7.0 and python>3.9

* Updated documentation

* Switched to clc from bm

* replaced bm with clc

* minor changes in docs

* switched atom property res_id to residue_id

* added method to get subcomponents

* removed traceback

* uniform formatting for warning

* replace nan values of coordiantes with zero

* updated documentations

* deleted the disconnected hydrogen removal

* removed mol3D

* updated the pipelines to process prd and clc

* replaced bm_id with clc_id

* added test for rdkit conformer writing

* updated pipeline test to take input as single ccd

* updated changelog

* updated version number

Author: roshkjr

CHANGELOG.md

@@ -1,6 +1,6 @@
 # Changelog
 
-## RELEASE 0.7.1 - July 26, 2023
+## RELEASE 0.8.0 - July 26, 2023
 
 ### Features
 * Added clc_reader and clc_writer to read and write Covalently Linked Components (CLCs)

pdbeccdutils/__init__.py

@@ -1 +1 @@
-__version__ = "0.7.2"
+__version__ = "0.8.0"