|
| 1 | +"""CSD- Claim Strength Downgrade Record schema. |
| 2 | +
|
| 3 | +Auditable trail for every claim downgrade triggered by benchmark results, |
| 4 | +reviewer challenges, cheap enemy refutations, data quality issues, scope |
| 5 | +creep detection, or calibration failures. Prevents silent claim drift upward |
| 6 | +after challenges. |
| 7 | +""" |
| 8 | + |
| 9 | +from __future__ import annotations |
| 10 | + |
| 11 | +from dataclasses import dataclass |
| 12 | + |
| 13 | +VALID_CSD_CLAIM_CLASSES: frozenset[str] = frozenset({ |
| 14 | + "novelty", |
| 15 | + "activity", |
| 16 | + "selectivity", |
| 17 | + "safety", |
| 18 | + "reproducibility", |
| 19 | + "calibration_improvement", |
| 20 | + "cheap_baseline_outperformed", |
| 21 | +}) |
| 22 | + |
| 23 | +VALID_CSD_TRIGGER_TYPES: frozenset[str] = frozenset({ |
| 24 | + "benchmark_result", |
| 25 | + "reviewer_challenge", |
| 26 | + "cheap_enemy_refutation", |
| 27 | + "data_quality_issue", |
| 28 | + "scope_creep_detected", |
| 29 | + "calibration_failure", |
| 30 | +}) |
| 31 | + |
| 32 | +VALID_CSD_DOWNGRADE_LEVELS: frozenset[str] = frozenset({ |
| 33 | + "minor", |
| 34 | + "major", |
| 35 | + "retracted", |
| 36 | +}) |
| 37 | + |
| 38 | +PROOF_LADDER_LEVELS: tuple[str, ...] = ( |
| 39 | + "speculative", |
| 40 | + "plausible_candidate", |
| 41 | + "multi_signal_candidate_evidence", |
| 42 | + "expert_reviewed_assay_proposal", |
| 43 | + "confirmed_in_vitro_hit", |
| 44 | + "replicated_independent_hit", |
| 45 | + "in_vivo_validated", |
| 46 | +) |
| 47 | + |
| 48 | + |
| 49 | +@dataclass |
| 50 | +class ClaimStrengthDowngrade: |
| 51 | + csd_id: str |
| 52 | + pipeline_version: str |
| 53 | + artifact_id: str |
| 54 | + claim_class: str |
| 55 | + trigger_type: str |
| 56 | + original_claim_text: str |
| 57 | + downgraded_claim_text: str |
| 58 | + original_proof_ladder_level: str |
| 59 | + downgraded_proof_ladder_level: str |
| 60 | + downgrade_level: str |
| 61 | + proof_ladder_steps_dropped: int |
| 62 | + trigger_evidence_ref: str |
| 63 | + is_retracted: bool |
| 64 | + dry_lab_only: bool = True |
| 65 | + limitations: list[str] | None = None |
| 66 | + created_at: str = "" |
| 67 | + |
| 68 | + |
| 69 | +def build_claim_strength_downgrade( |
| 70 | + *, |
| 71 | + csd_id: str, |
| 72 | + pipeline_version: str, |
| 73 | + artifact_id: str, |
| 74 | + claim_class: str, |
| 75 | + trigger_type: str, |
| 76 | + original_claim_text: str, |
| 77 | + downgraded_claim_text: str, |
| 78 | + original_proof_ladder_level: str, |
| 79 | + downgraded_proof_ladder_level: str, |
| 80 | + downgrade_level: str, |
| 81 | + trigger_evidence_ref: str, |
| 82 | + limitations: list[str], |
| 83 | + created_at: str, |
| 84 | +) -> ClaimStrengthDowngrade: |
| 85 | + is_retracted = downgrade_level == "retracted" |
| 86 | + if is_retracted: |
| 87 | + proof_ladder_steps_dropped = 0 |
| 88 | + else: |
| 89 | + orig_idx = PROOF_LADDER_LEVELS.index(original_proof_ladder_level) |
| 90 | + down_idx = PROOF_LADDER_LEVELS.index(downgraded_proof_ladder_level) |
| 91 | + proof_ladder_steps_dropped = orig_idx - down_idx |
| 92 | + |
| 93 | + csd = ClaimStrengthDowngrade( |
| 94 | + csd_id=csd_id, |
| 95 | + pipeline_version=pipeline_version, |
| 96 | + artifact_id=artifact_id, |
| 97 | + claim_class=claim_class, |
| 98 | + trigger_type=trigger_type, |
| 99 | + original_claim_text=original_claim_text, |
| 100 | + downgraded_claim_text=downgraded_claim_text, |
| 101 | + original_proof_ladder_level=original_proof_ladder_level, |
| 102 | + downgraded_proof_ladder_level=downgraded_proof_ladder_level, |
| 103 | + downgrade_level=downgrade_level, |
| 104 | + proof_ladder_steps_dropped=proof_ladder_steps_dropped, |
| 105 | + trigger_evidence_ref=trigger_evidence_ref, |
| 106 | + is_retracted=is_retracted, |
| 107 | + dry_lab_only=True, |
| 108 | + limitations=limitations, |
| 109 | + created_at=created_at, |
| 110 | + ) |
| 111 | + validate_claim_strength_downgrade(csd) |
| 112 | + return csd |
| 113 | + |
| 114 | + |
| 115 | +def validate_claim_strength_downgrade( |
| 116 | + csd: ClaimStrengthDowngrade, |
| 117 | +) -> None: |
| 118 | + if not csd.csd_id.startswith("CSD-"): |
| 119 | + raise ValueError( |
| 120 | + f"csd_id must start with 'CSD-': {csd.csd_id!r}" |
| 121 | + ) |
| 122 | + if not csd.pipeline_version: |
| 123 | + raise ValueError("pipeline_version must be non-empty") |
| 124 | + if not csd.artifact_id: |
| 125 | + raise ValueError("artifact_id must be non-empty") |
| 126 | + if not csd.original_claim_text: |
| 127 | + raise ValueError("original_claim_text must be non-empty") |
| 128 | + if not csd.downgraded_claim_text: |
| 129 | + raise ValueError("downgraded_claim_text must be non-empty") |
| 130 | + if csd.claim_class not in VALID_CSD_CLAIM_CLASSES: |
| 131 | + raise ValueError( |
| 132 | + f"claim_class {csd.claim_class!r} not in VALID_CSD_CLAIM_CLASSES" |
| 133 | + ) |
| 134 | + if csd.trigger_type not in VALID_CSD_TRIGGER_TYPES: |
| 135 | + raise ValueError( |
| 136 | + f"trigger_type {csd.trigger_type!r} not in VALID_CSD_TRIGGER_TYPES" |
| 137 | + ) |
| 138 | + if csd.downgrade_level not in VALID_CSD_DOWNGRADE_LEVELS: |
| 139 | + raise ValueError( |
| 140 | + f"downgrade_level {csd.downgrade_level!r} not in VALID_CSD_DOWNGRADE_LEVELS" |
| 141 | + ) |
| 142 | + if csd.original_proof_ladder_level not in PROOF_LADDER_LEVELS: |
| 143 | + raise ValueError( |
| 144 | + f"original_proof_ladder_level {csd.original_proof_ladder_level!r} " |
| 145 | + f"not in PROOF_LADDER_LEVELS" |
| 146 | + ) |
| 147 | + if csd.downgraded_proof_ladder_level not in PROOF_LADDER_LEVELS: |
| 148 | + raise ValueError( |
| 149 | + f"downgraded_proof_ladder_level {csd.downgraded_proof_ladder_level!r} " |
| 150 | + f"not in PROOF_LADDER_LEVELS" |
| 151 | + ) |
| 152 | + |
| 153 | + if csd.downgrade_level != "retracted": |
| 154 | + orig_idx = PROOF_LADDER_LEVELS.index(csd.original_proof_ladder_level) |
| 155 | + down_idx = PROOF_LADDER_LEVELS.index(csd.downgraded_proof_ladder_level) |
| 156 | + if down_idx > orig_idx: |
| 157 | + raise ValueError( |
| 158 | + f"downgraded_proof_ladder_level {csd.downgraded_proof_ladder_level!r} " |
| 159 | + f"(index {down_idx}) > original_proof_ladder_level " |
| 160 | + f"{csd.original_proof_ladder_level!r} (index {orig_idx}) — " |
| 161 | + f"upgrade not allowed" |
| 162 | + ) |
| 163 | + else: |
| 164 | + if csd.downgraded_claim_text != "RETRACTED": |
| 165 | + raise ValueError( |
| 166 | + f"downgraded_claim_text must be 'RETRACTED' for retracted: " |
| 167 | + f"{csd.downgraded_claim_text!r}" |
| 168 | + ) |
| 169 | + |
| 170 | + if csd.downgrade_level != "retracted": |
| 171 | + expected_steps = ( |
| 172 | + PROOF_LADDER_LEVELS.index(csd.original_proof_ladder_level) |
| 173 | + - PROOF_LADDER_LEVELS.index(csd.downgraded_proof_ladder_level) |
| 174 | + ) |
| 175 | + else: |
| 176 | + expected_steps = 0 |
| 177 | + if csd.proof_ladder_steps_dropped != expected_steps: |
| 178 | + raise ValueError( |
| 179 | + f"proof_ladder_steps_dropped {csd.proof_ladder_steps_dropped} != " |
| 180 | + f"{expected_steps} (expected)" |
| 181 | + ) |
| 182 | + |
| 183 | + expected_retracted = csd.downgrade_level == "retracted" |
| 184 | + if csd.is_retracted != expected_retracted: |
| 185 | + raise ValueError( |
| 186 | + f"is_retracted {csd.is_retracted} != {expected_retracted} " |
| 187 | + f"expected for downgrade_level={csd.downgrade_level!r}" |
| 188 | + ) |
| 189 | + |
| 190 | + if csd.dry_lab_only is not True: |
| 191 | + raise ValueError("dry_lab_only must be True") |
| 192 | + if not csd.trigger_evidence_ref: |
| 193 | + raise ValueError("trigger_evidence_ref must be non-empty") |
| 194 | + if not csd.limitations: |
| 195 | + raise ValueError("limitations must be non-empty") |
| 196 | + if not csd.created_at: |
| 197 | + raise ValueError("created_at must be non-empty") |
| 198 | + |
| 199 | + |
| 200 | +def format_claim_strength_downgrade( |
| 201 | + csd: ClaimStrengthDowngrade, |
| 202 | +) -> str: |
| 203 | + lines = [ |
| 204 | + f"Claim Strength Downgrade — {csd.csd_id}", |
| 205 | + f"Pipeline: {csd.pipeline_version}", |
| 206 | + f"Artifact: {csd.artifact_id}", |
| 207 | + f"Claim class: {csd.claim_class}", |
| 208 | + f"Trigger: {csd.trigger_type}", |
| 209 | + f"Downgrade level: {csd.downgrade_level}", |
| 210 | + f"Original proof ladder level: {csd.original_proof_ladder_level}", |
| 211 | + f"Downgraded proof ladder level: {csd.downgraded_proof_ladder_level}", |
| 212 | + f"Proof ladder steps dropped: {csd.proof_ladder_steps_dropped}", |
| 213 | + f"Original claim: {csd.original_claim_text}", |
| 214 | + f"Downgraded claim: {csd.downgraded_claim_text}", |
| 215 | + f"Trigger evidence ref: {csd.trigger_evidence_ref}", |
| 216 | + f"Retracted: {csd.is_retracted}", |
| 217 | + f"Dry lab only: {csd.dry_lab_only}", |
| 218 | + ] |
| 219 | + if csd.limitations: |
| 220 | + lines.append(f"Limitations: {'; '.join(csd.limitations)}") |
| 221 | + lines.append(f"Created: {csd.created_at}") |
| 222 | + return "\n".join(lines) |
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