Fix handling for capitalized colnames in postgres

Author: qqndrew

API/pom.xml

@@ -31,7 +31,7 @@
     <parent>
         <groupId>org.ohnlp.backbone</groupId>
         <artifactId>backbone-parent</artifactId>
-        <version>3.0.16</version>
+        <version>3.0.17</version>
     </parent>
 
     <artifactId>api</artifactId>

Core/pom.xml

@@ -7,7 +7,7 @@
     <parent>
         <groupId>org.ohnlp.backbone</groupId>
         <artifactId>backbone-parent</artifactId>
-        <version>3.0.16</version>
+        <version>3.0.17</version>
     </parent>
 
     <artifactId>core</artifactId>

Example-Backbone-Configs/pom.xml

@@ -7,7 +7,7 @@
     <parent>
         <groupId>org.ohnlp.backbone</groupId>
         <artifactId>backbone-parent</artifactId>
-        <version>3.0.16</version>
+        <version>3.0.17</version>
     </parent>
 
     <artifactId>example-backbone-configs</artifactId>

IO/pom.xml

@@ -7,7 +7,7 @@
     <parent>
         <groupId>org.ohnlp.backbone</groupId>
         <artifactId>backbone-parent</artifactId>
-        <version>3.0.16</version>
+        <version>3.0.17</version>
     </parent>
 
     <groupId>org.ohnlp.backbone.io</groupId>

IO/src/main/java/org/ohnlp/backbone/io/jdbc/JDBCExtract.java

@@ -216,7 +216,11 @@ private String[] findPaginationOrderingColumns(String query) throws ComponentIni
             }
             if (this.identifierCol != null) {
                 // User-supplied identifier column exists, make sure it actually exists in query results
-                if (!colNameToIndex.containsKey(this.identifierCol)) {
+                String toCheck = this.identifierCol;
+                if (this.identifierCol.startsWith("\"") && this.identifierCol.endsWith("\"")) {
+                    toCheck = toCheck.substring(1, toCheck.length() - 1);
+                }
+                if (!colNameToIndex.containsKey(toCheck)) {
                     throw new ComponentInitializationException(
                             new IllegalArgumentException("The supplied identifier_col " + this.identifierCol + " " +
                                     "does not exist in the returned query results. Available columns: " +

Plugin-Manager/pom.xml

@@ -7,7 +7,7 @@
     <parent>
         <groupId>org.ohnlp.backbone</groupId>
         <artifactId>backbone-parent</artifactId>
-        <version>3.0.16</version>
+        <version>3.0.17</version>
     </parent>
 
     <artifactId>plugin-manager</artifactId>

Transforms/pom.xml

@@ -7,7 +7,7 @@
     <parent>
         <groupId>org.ohnlp.backbone</groupId>
         <artifactId>backbone-parent</artifactId>
-        <version>3.0.16</version>
+        <version>3.0.17</version>
     </parent>
 
     <groupId>org.ohnlp.backbone.transforms</groupId>

pom.xml

@@ -6,7 +6,7 @@
 
     <groupId>org.ohnlp.backbone</groupId>
     <artifactId>backbone-parent</artifactId>
-    <version>3.0.16</version>
+    <version>3.0.17</version>
 
 
     <properties>