From 0dce58a686aa9853e818b7daf6756a7563e3b466 Mon Sep 17 00:00:00 2001 From: "Richard D Boyce, PhD" Date: Tue, 12 May 2026 11:37:01 -0500 Subject: [PATCH] Update README with new links and improved wording --- README.md | 18 ++++++++++++------ 1 file changed, 12 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index b6d4a0b..057f587 100644 --- a/README.md +++ b/README.md @@ -2,12 +2,13 @@ This repository is building an agent-style interface for common OHDSI study design tasks. The current implementation is strongest in two areas: -- phenotype recommendation for target and outcome cohort selection +- Phenotype recommendation for target and outcome cohort selection - Keeper-assisted concept generation, profile extraction, and row adjudication for phenotype validation - +- R demos of using workflows that call the ACP/MCP flows to design strategus incidence rate and cohort method analyses [![Watch the video](https://github.com/user-attachments/assets/1679912f-fcbb-4dbf-830e-ce493188e8db)](https://pitt.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=eaaf0e5f-d60f-4b9a-a521-b42c016b1af3) +[![The new `/ohdsi` feature](https://github.com/user-attachments/assets/ab9d39e2-af4f-4d32-a4a4-d20df17b2f1c)](https://pitt.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=77e8b162-4116-4d61-9e00-b4480104b886) The project separates orchestration from deterministic tooling: @@ -58,10 +59,15 @@ Related implemented flows: This same recommendation path is already wired into the R Strategus incidence shell and the cohort-method shell. Primary references: - -- [docs/PHENOTYPE_RECOMMENDATION_DESIGN.md](docs/PHENOTYPE_RECOMMENDATION_DESIGN.md) -- [docs/STRATEGUS_SHELL.md](docs/STRATEGUS_SHELL.md) -- [docs/INCIDENCE_WORKFLOW.md](docs/INCIDENCE_WORKFLOW.md) +- [docs/TESTING.md](docs/TESTING.md) +- [docs/WORKFLOW_PHENOTYPE_RECOMMENDATION.md](docs/WORKFLOW_PHENOTYPE_RECOMMENDATION.md) +- [docs/PHENOTYPE_VALIDATION_REVIEW.md](docs/PHENOTYPE_VALIDATION_REVIEW.md) +- [docs/SPEC_KEEPER_INTERFACE.md](docs/SPEC_KEEPER_INTERFACE.md) +- [docs/R_STRATEGUS_INCIDENCE_SHELL.md](docs/R_STRATEGUS_INCIDENCE_SHELL.md) +- [docs/R_STRATEGUS_COHORT_METHODS_SHELL.md](docs/R_STRATEGUS_COHORT_METHODS_SHELL.md) +- [docs/WORKFLOW_INCIDENCE.md](docs/WORKFLOW_INCIDENCE.md) +- [docs/ROADMAP.md](docs/ROADMAP.md) +- [docs/R_PACKAGE_ARCHITECTURE_PLAN.md](docs/R_PACKAGE_ARCHITECTURE_PLAN.md) ### 2. Keeper-Assisted Phenotype Validation