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Clean up the Testing Warnings #553

@RHammond2

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@RHammond2

Similar to the docs there are numerous warnings coming from the testing infrastructure that impede quickly identifying newly introduced issues. There are likely many warnings that can be configured to be ignored with the pyproject.toml settings, or others where the tested functionality or test themselves need a small adjustment. These changes should be gradually addressed as functionality is modified/added to make the fix more palatable.

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