A question about install HRLDAS

[liuxiaoran6]

HELLO
I want to install the hrldas 3.7.1 in my Ubuntu 17.04 .
I choose the gfortran for my linux system， I modify the "user_build_options"like this

COMPILERF90 = /usr/bin/gfortran-7
FREESOURCE = -ffree-form -ffree-line-length-none
F90FLAGS = -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring
MODFLAG = -I
LDFLAGS =
CPP = /usr/bin/cpp-6
CPPFLAGS = -P -traditional -D_GFORTRAN_ # -D_HRLDAS_URBAN_
LIBS =
LIBJASPER = -ljpeg -L/usr/local/JASPER/lib -ljasper
INCJASPER = -I/usr/local/JASPER/include
NETCDFMOD = -I/usr/local/netcdf/include
NETCDFLIB = -L/usr/local/netcdf/lib -lnetcdf -lnetcdff
BZIP2 = NO
BZIP2_LIB = -lbz2
BZIP2_INCLUDE = -I/opt/local/include
RM = rm -f
CC = /usr/bin/gcc-6

But when I type 'make' . I encountered an error like this

lxr@ubuntu:~/hrldas-release-3.7.1/HRLDAS$ make
(cd Utility_routines; make)
make[1]: Entering directory '/home/lxr/hrldas-release-3.7.1/HRLDAS/Utility_routines'

rm -f module_date_utilities.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_date_utilities.F > module_date_utilities.f90
/usr/bin/gfortran-7 -o module_date_utilities.o -c -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -ffree-form -ffree-line-length-none module_date_utilities.f90

rm -f module_model_constants.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_model_constants.F > module_model_constants.f90
/usr/bin/gfortran-7 -o module_model_constants.o -c -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -ffree-form -ffree-line-length-none module_model_constants.f90

rm -f module_wrf_utilities.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_wrf_utilities.F > module_wrf_utilities.f90
/usr/bin/gfortran-7 -o module_wrf_utilities.o -c -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -ffree-form -ffree-line-length-none module_wrf_utilities.f90

rm -f kwm_string_utilities.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ kwm_string_utilities.F > kwm_string_utilities.f90
/usr/bin/gfortran-7 -o kwm_string_utilities.o -c -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -ffree-form -ffree-line-length-none kwm_string_utilities.f90

make[1]: Leaving directory '/home/lxr/hrldas-release-3.7.1/HRLDAS/Utility_routines'
(cd phys; make)
make[1]: Entering directory '/home/lxr/hrldas-release-3.7.1/HRLDAS/phys'

rm -f module_sf_noahmplsm.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_sf_noahmplsm.F > module_sf_noahmplsm.f90
/usr/bin/gfortran-7 -o module_sf_noahmplsm.o -c -I../Utility_routines -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -ffree-form -ffree-line-length-none module_sf_noahmplsm.f90

rm -f module_sf_noahmp_glacier.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_sf_noahmp_glacier.F > module_sf_noahmp_glacier.f90
/usr/bin/gfortran-7 -o module_sf_noahmp_glacier.o -c -I../Utility_routines -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -ffree-form -ffree-line-length-none module_sf_noahmp_glacier.f90

rm -f module_sf_noahmp_groundwater.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_sf_noahmp_groundwater.F > module_sf_noahmp_groundwater.f90
/usr/bin/gfortran-7 -o module_sf_noahmp_groundwater.o -c -I../Utility_routines -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -ffree-form -ffree-line-length-none module_sf_noahmp_groundwater.f90

rm -f module_sf_noahmpdrv.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_sf_noahmpdrv.F > module_sf_noahmpdrv.f90
/usr/bin/gfortran-7 -o module_sf_noahmpdrv.o -c -I../Utility_routines -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -ffree-form -ffree-line-length-none module_sf_noahmpdrv.f90

make[1]: Leaving directory '/home/lxr/hrldas-release-3.7.1/HRLDAS/phys'
(cd IO_code; make)
make[1]: Entering directory '/home/lxr/hrldas-release-3.7.1/HRLDAS/IO_code'

rm -f module_hrldas_netcdf_io.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ -I/usr/local/netcdf/include module_hrldas_netcdf_io.F > module_hrldas_netcdf_io.f90
/usr/bin/gfortran-7 -o module_hrldas_netcdf_io.o -c -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -ffree-form -ffree-line-length-none -I ../MPP -I../Utility_routines -I/usr/local/netcdf/include module_hrldas_netcdf_io.f90

rm -f module_NoahMP_hrldas_driver.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_NoahMP_hrldas_driver.F > module_NoahMP_hrldas_driver.f90
/usr/bin/gfortran-7 -o module_NoahMP_hrldas_driver.o -c -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -ffree-form -ffree-line-length-none -I -I.
-I../phys -I../Utility_routines -I/usr/local/netcdf/include module_NoahMP_hrldas_driver.f90
f951: Warning: Nonexistent include directory ‘-I.’ [-Wmissing-include-dirs]

rm -f main_hrldas_driver.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ main_hrldas_driver.F > main_hrldas_driver.f90
/usr/bin/gfortran-7 -o main_hrldas_driver.o -c -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -ffree-form -ffree-line-length-none -I ../MPP -I.
-I../phys -I../Utility_routines -I/usr/local/netcdf/include main_hrldas_driver.f90

make[1]: Leaving directory '/home/lxr/hrldas-release-3.7.1/HRLDAS/IO_code'
(cd run; make)
make[1]: Entering directory '/home/lxr/hrldas-release-3.7.1/HRLDAS/run'

echo " -Wl,-rpath, -L -lhdf5 -lz"
-Wl,-rpath, -L -lhdf5 -lz
/usr/bin/gfortran-7 -o hrldas.exe -I../IO_code -I../phys ../IO_code/main_hrldas_driver.o ../IO_code/module_hrldas_netcdf_io.o ../phys/module_sf_noahmpdrv.o ../phys/module_sf_noahmplsm.o ../phys/module_sf_noahmp_glacier.o ../phys/module_sf_noahmp_groundwater.o ../Utility_routines/module_wrf_utilities.o ../Utility_routines/module_model_constants.o ../Utility_routines/module_date_utilities.o ../Utility_routines/kwm_string_utilities.o ../IO_code/module_NoahMP_hrldas_driver.o -L/usr/local/netcdf/lib -lnetcdf -lnetcdff

make[1]: Leaving directory '/home/lxr/hrldas-release-3.7.1/HRLDAS/run'
(cd HRLDAS_forcing; make)
make[1]: Entering directory '/home/lxr/hrldas-release-3.7.1/HRLDAS/HRLDAS_forcing'
(cd lib; make)
make[2]: Entering directory '/home/lxr/hrldas-release-3.7.1/HRLDAS/HRLDAS_forcing/lib'

rm -f module_grib2_tables.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO module_grib2_tables.F > module_grib2_tables.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include module_grib2_tables.f90

rm -f module_mapinfo.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO module_mapinfo.F > module_mapinfo.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include module_mapinfo.f90

rm -f kwm_date_utilities.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO kwm_date_utilities.F > kwm_date_utilities.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include kwm_date_utilities.f90

rm -f module_grib_common.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO module_grib_common.F > module_grib_common.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include module_grib_common.f90

rm -f module_grib1.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO module_grib1.F > module_grib1.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include module_grib1.f90

rm -f module_grib2.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO module_grib2.F > module_grib2.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include module_grib2.f90

rm -f trig_degrees.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO trig_degrees.F > trig_degrees.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include trig_degrees.f90

rm -f module_llxy.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO module_llxy.F > module_llxy.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include module_llxy.f90

rm -f module_input_data_structure.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO module_input_data_structure.F > module_input_data_structure.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include module_input_data_structure.f90

rm -f arguments_module.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO arguments_module.F > arguments_module.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include arguments_module.f90

rm -f gbytesys.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO gbytesys.F > gbytesys.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include gbytesys.f90

rm -f swap4f.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO swap4f.F > swap4f.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include swap4f.f90
/usr/bin/gcc-6 -c -D_BZIP_NO cio.c
cio.c:31:15: warning: return type defaults to ‘int’ [-Wimplicit-int]
#define copen copen_
^
cio.c:72:1: note: in expansion of macro ‘copen’
copen(nunit, name, mode, err, oflag)
^~~~~
cio.c:36:16: warning: return type defaults to ‘int’ [-Wimplicit-int]
#define bnseek bnseek_
^
cio.c:148:1: note: in expansion of macro ‘bnseek’
bnseek(fd, bread, mode, iprint)
^~~~~~
cio.c: In function ‘bnseek_’:
cio.c:179:31: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘off_t {aka long int}’ [-Wformat=]
printf(" lseek return=%d, *mode=%d\n", i, *mode);
^
cio.c: At top level:
cio.c:33:16: warning: return type defaults to ‘int’ [-Wimplicit-int]
#define bnread bnread_
^
cio.c:186:1: note: in expansion of macro ‘bnread’
bnread(fd, buf, nbuf, bread, ios, idiag)
^~~~~~
cio.c:34:16: warning: return type defaults to ‘int’ [-Wimplicit-int]
#define bnwrit bnwrit_
^
cio.c:237:1: note: in expansion of macro ‘bnwrit’
bnwrit(fd, buf, nbuf, bwritten, err, idiag)
^~~~~~
cio.c:32:16: warning: return type defaults to ‘int’ [-Wimplicit-int]
#define cclose cclose_
^
cio.c:271:1: note: in expansion of macro ‘cclose’
cclose(nunit, iprint, err)
^~~~~~

rm -f kwm_grid_utilities.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO kwm_grid_utilities.F > kwm_grid_utilities.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include kwm_grid_utilities.f90

rm -f kwm_timing_utilities.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO kwm_timing_utilities.F > kwm_timing_utilities.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include kwm_timing_utilities.f90

rm -f kwm_string_utilities.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO kwm_string_utilities.F > kwm_string_utilities.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include kwm_string_utilities.f90
/usr/bin/gcc-6 -c swap4c.c

rm -f get_unused_unit.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO get_unused_unit.F > get_unused_unit.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include get_unused_unit.f90
/usr/bin/gcc-6 -c -I/usr/local/JASPER/include decode_jpeg2000.c
/usr/bin/gcc-6 -c -D_BZIP_NO io_f.c

rm -f module_grib.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO module_grib.F > module_grib.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include module_grib.f90

rm -f module_geo_em.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ -DBIT32 -D_BZIP_NO module_geo_em.F > module_geo_em.f90
/usr/bin/gfortran-7 -c -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I/usr/local/netcdf/include module_geo_em.f90
rm -f libsmda.a
ar q libsmda.a module_grib2.o module_grib2_tables.o trig_degrees.o module_input_data_structure.o arguments_module.o gbytesys.o swap4f.o module_llxy.o cio.o kwm_date_utilities.o kwm_grid_utilities.o kwm_timing_utilities.o kwm_string_utilities.o swap4c.o get_unused_unit.o decode_jpeg2000.o io_f.o module_mapinfo.o module_grib1.o module_grib.o module_grib_common.o module_geo_em.o
ar: creating libsmda.a
make[2]: Leaving directory '/home/lxr/hrldas-release-3.7.1/HRLDAS/HRLDAS_forcing/lib'
(make -f Makefile all)
make[2]: Entering directory '/home/lxr/hrldas-release-3.7.1/HRLDAS/HRLDAS_forcing'

rm -f create_forcing.f90
/usr/bin/cpp-6 -P -traditional -D_GFORTRAN_ create_forcing.F > create_forcing.f90
/usr/bin/gfortran-7 -ffree-form -ffree-line-length-none -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -c -I/usr/local/netcdf/include -I./lib -I./lib create_forcing.f90
(cd lib; make)
make[3]: Entering directory '/home/lxr/hrldas-release-3.7.1/HRLDAS/HRLDAS_forcing/lib'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/home/lxr/hrldas-release-3.7.1/HRLDAS/HRLDAS_forcing/lib'
/usr/bin/gfortran-7 -o create_forcing.exe -I./lib -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -I./lib create_forcing.o
-L./lib -lsmda -L/usr/local/netcdf/lib -lnetcdf -lnetcdff -ljpeg -L/usr/local/JASPER/lib -ljasper
./lib/libsmda.a(module_grib2.o): In function __module_grib2_MOD_fortran_decode_jpeg2000': /home/lxr/hrldas-release-3.7.1/HRLDAS/HRLDAS_forcing/lib/module_grib2.f90:148: undefined reference to info_jpeg2000'
/home/lxr/hrldas-release-3.7.1/HRLDAS/HRLDAS_forcing/lib/module_grib2.f90:156: undefined reference to decode_jpeg2000' ./lib/libsmda.a(module_grib.o): In function __module_grib_MOD_findgrib':
/home/lxr/hrldas-release-3.7.1/HRLDAS/HRLDAS_forcing/lib/module_grib.f90:186: undefined reference to io_fread' /home/lxr/hrldas-release-3.7.1/HRLDAS/HRLDAS_forcing/lib/module_grib.f90:203: undefined reference to io_fread'
/home/lxr/hrldas-release-3.7.1/HRLDAS/HRLDAS_forcing/lib/module_grib.f90:223: undefined reference to io_fread' /home/lxr/hrldas-release-3.7.1/HRLDAS/HRLDAS_forcing/lib/module_grib.f90:280: undefined reference to io_ftell'
./lib/libsmda.a(module_grib.o): In function __module_grib_MOD_getgrib': /home/lxr/hrldas-release-3.7.1/HRLDAS/HRLDAS_forcing/lib/module_grib.f90:114: undefined reference to io_fread'
./lib/libsmda.a(module_grib.o): In function __module_grib_MOD_gribclose': /home/lxr/hrldas-release-3.7.1/HRLDAS/HRLDAS_forcing/lib/module_grib.f90:77: undefined reference to c_close'
./lib/libsmda.a(module_grib.o): In function __module_grib_MOD_gribopen': /home/lxr/hrldas-release-3.7.1/HRLDAS/HRLDAS_forcing/lib/module_grib.f90:67: undefined reference to c_gribopen'
collect2: error: ld returned 1 exit status
Makefile:28: recipe for target 'create_forcing.exe' failed
make[2]: *** [create_forcing.exe] Error 1
make[2]: Leaving directory '/home/lxr/hrldas-release-3.7.1/HRLDAS/HRLDAS_forcing'
Makefile:12: recipe for target 'default' failed
make[1]: *** [default] Error 2
make[1]: Leaving directory '/home/lxr/hrldas-release-3.7.1/HRLDAS/HRLDAS_forcing'
Makefile:8: recipe for target 'all' failed
make: *** [all] Error 2

”undefined reference to `info_jpeg2000' “ I don't know how to solve these undefined reference problems.

I have not changed any other code. So I hope you an solve my problem.

By the way ,I can successfully install the HRLDAS-3.6 in my conputer.(didn't change the gnu,netcdf,jasper et al)

I'm looking forward to your reply.
Many thanks and best wishes!

liuxiaoran

[drnimbusrain]

Hi Liuxiaoran,

Have you solved this issue? I have the same errors trying to compile HRLDASv4.0 on my Ubuntu machine with gfortran.

Thank you,

Patrick

[weiyu11]

Hydro.exe has been compiled successfully. The error happens in building utilities. You can ignore if you only use model.
Wei Yu

[drnimbusrain]

Thank you Wei Yu for your response, and good to know. Still interested in fixing the error in case I want to test the utilities.

Also, I do not get these errors when using ifort compiler, so I hope to come up with solution for gfortran. Any further information is much appreciated.

Thank you,

Patrick

[liuxiaoran6]

Thank you Wei Yu for your response, and good to know. Still interested in fixing the error in case I want to test the utilities.

Also, I do not get these errors when using ifort compiler, so I hope to come up with solution for gfortran. Any further information is much appreciated.

Thank you,

Patrick

Hi drnimbusrain
I have solved this issue.
Delete the "-fno-underscoring" in user_build_options,and then you can install the HRLDAS
I don't know why do this can install
THANK YOU
Liu Xiaoran

[drnimbusrain]

Thank you Liu Xiaoran, that solved the issue in creating both hrldas and create_forcing executable on ubuntu with gfortran.

Regards,

Patrick

[appleplusone]

Hi
I have the same error when I compile the HRLDAS 4.0 . I deleted “ -fno-underscoring” to compile the HRLDAS 4.0,but still showed the “ undefined reference to c_gribopen“error,what should I do to overcome this error？Any further information is much appreciated.

[dineshjnu2020]

Dear All,
While issuing make command with gfortran and ifort options, I got following error...

Entering directory `/home/drdinesh/Desktop/sm-wrf/hrldas/hrldas-release-3.7.1/hrldas3.7.1/Utility_routines'

rm -f module_date_utilities.f90
/usr/bin/cpp -C -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_date_utilities.F > module_date_utilities.f90
/usr/bin/gfortran -o module_date_utilities.o -c -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -ffree-form -ffree-line-length-none module_date_utilities.f90
module_date_utilities.f90:1.1:

/* Copyright (C) 1991-2012 Free Software Foundation, Inc.
1
Error: Invalid character in name at (1)
module_date_utilities.f90:2.3:

This file is part of the GNU C Library.
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:4.3:

The GNU C Library is free software; you can redistribute it and/or
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:4.39:

The GNU C Library is free software; you can redistribute it and/or
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:5.3:

modify it under the terms of the GNU Lesser General Public
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:6.3:

License as published by the Free Software Foundation; either
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:6.57:

License as published by the Free Software Foundation; either
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:7.3:

version 2.1 of the License, or (at your option) any later version.
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:9.3:

The GNU C Library is distributed in the hope that it will be useful,
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:10.3:

but WITHOUT ANY WARRANTY; without even the implied warranty of
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:10.29:

but WITHOUT ANY WARRANTY; without even the implied warranty of
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:11.3:

MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:12.3:

Lesser General Public License for more details.
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:14.3:

You should have received a copy of the GNU Lesser General Public
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:15.3:

License along with the GNU C Library; if not, see
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:15.41:

License along with the GNU C Library; if not, see
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:16.4:

http://www.gnu.org/licenses/. */
1
Error: Invalid character in name at (1)
module_date_utilities.f90:19.1:

/* This header is separate from features.h so that the compiler can
1
Error: Invalid character in name at (1)
module_date_utilities.f90:20.3:

include it implicitly at the start of every compilation. It must
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:21.3:

not itself include <features.h> or any other header that includes
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:22.4:

<features.h> because the implicit include comes before any feature
1
Error: Invalid character in name at (1)
module_date_utilities.f90:23.3:

test macros that may be defined in a source file before it first
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:24.3:

explicitly includes a system header. GCC knows the name of this
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:25.3:

header in order to preinclude it. */
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:27.1:

/* We do support the IEC 559 math functionality, real and complex. */
1
Error: Invalid character in name at (1)
Fatal Error: Error count reached limit of 25.
make[1]: *** [module_date_utilities.o] Error 1
make[1]: Leaving directory `/home/drdinesh/Desktop/sm-wrf/hrldas/hrldas-release-3.7.1/hrldas3.7.1/Utility_routines'
make: *** [all] Error 2

Can anybody help. I a trying to install HRLDAS 3.7 on centos 7.

Regards
Dr Dinesh

[hugotseixas]

Hi,

I'm having a similar issue as dineshjnu2020. Using gfortran on Ubuntu 18.04.

Regards,

Hugo

[mmelendezb]

Dear All,
While issuing make command with gfortran and ifort options, I got following error...

Entering directory `/home/drdinesh/Desktop/sm-wrf/hrldas/hrldas-release-3.7.1/hrldas3.7.1/Utility_routines'

rm -f module_date_utilities.f90
/usr/bin/cpp -C -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_date_utilities.F > module_date_utilities.f90
/usr/bin/gfortran -o module_date_utilities.o -c -g -fconvert=big-endian -fbounds-check -fno-range-check -fno-underscoring -ffree-form -ffree-line-length-none module_date_utilities.f90
module_date_utilities.f90:1.1:

/* Copyright (C) 1991-2012 Free Software Foundation, Inc.
1
Error: Invalid character in name at (1)
module_date_utilities.f90:2.3:

This file is part of the GNU C Library.
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:4.3:

The GNU C Library is free software; you can redistribute it and/or
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:4.39:

The GNU C Library is free software; you can redistribute it and/or
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:5.3:

modify it under the terms of the GNU Lesser General Public
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:6.3:

License as published by the Free Software Foundation; either
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:6.57:

License as published by the Free Software Foundation; either
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:7.3:

version 2.1 of the License, or (at your option) any later version.
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:9.3:

The GNU C Library is distributed in the hope that it will be useful,
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:10.3:

but WITHOUT ANY WARRANTY; without even the implied warranty of
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:10.29:

but WITHOUT ANY WARRANTY; without even the implied warranty of
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:11.3:

MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:12.3:

Lesser General Public License for more details.
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:14.3:

You should have received a copy of the GNU Lesser General Public
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:15.3:

License along with the GNU C Library; if not, see
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:15.41:

License along with the GNU C Library; if not, see
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:16.4:

http://www.gnu.org/licenses/. */
1
Error: Invalid character in name at (1)
module_date_utilities.f90:19.1:

/* This header is separate from features.h so that the compiler can
1
Error: Invalid character in name at (1)
module_date_utilities.f90:20.3:

include it implicitly at the start of every compilation. It must
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:21.3:

not itself include <features.h> or any other header that includes
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:22.4:

<features.h> because the implicit include comes before any feature
1
Error: Invalid character in name at (1)
module_date_utilities.f90:23.3:

test macros that may be defined in a source file before it first
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:24.3:

explicitly includes a system header. GCC knows the name of this
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:25.3:

header in order to preinclude it. */
1
Error: Unclassifiable statement at (1)
module_date_utilities.f90:27.1:

/* We do support the IEC 559 math functionality, real and complex. */
1
Error: Invalid character in name at (1)
Fatal Error: Error count reached limit of 25.
make[1]: *** [module_date_utilities.o] Error 1
make[1]: Leaving directory `/home/drdinesh/Desktop/sm-wrf/hrldas/hrldas-release-3.7.1/hrldas3.7.1/Utility_routines'
make: *** [all] Error 2

Can anybody help. I a trying to install HRLDAS 3.7 on centos 7.

Regards
Dr Dinesh

DI you figure it out?
I'm having the same issue.
CHeers!

[mmelendezb]

Hi,

I'm having a similar issue as dineshjnu2020. Using gfortran on Ubuntu 18.04.

Regards,

Hugo

Hi HUgo.
DId y figure it out the issue? I'm having the same problem
Cheers,
MIshel

[dineshjnu2020]

The problem is that for every line, every F90 action, the file '/usr/include/stdc-predef.h' is read.

A workaround : First, save a copy of stdc-predef.h .
Then delete all the "text information". Like the attached stdc-predef.h .
Source: https://www.linuxquestions.org/questions/slackware-14/invalid-character-in-name-at-1-usr-include-stdc-predef-h-2-3-included-at-c_po-4175542242/

It has worked out pretty well for me. I wish good luck for others.
Cheers
Dr Dinesh

[mmelendezb]

Hi Dr Dinesh!
THanks for your reply.
I did what you just suggested, and now I'm having issues regarding another file (module_noahMP_hrldas_driver.f) as follows:

(cd Utility_routines; make)
make[1]: Entering directory `/home/HRLDAS/src/HRLDAS-v3.6/Utility_routines'

rm -f module_date_utilities.f
cpp -C -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_date_utilities.F > module_date_utilities.f
gfortran -o module_date_utilities.o -c -g -fconvert=big-endian -fbounds-check -fno-range-check -ffree-form -ffree-line-length-none module_date_utilities.f

rm -f module_model_constants.f
cpp -C -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_model_constants.F > module_model_constants.f
gfortran -o module_model_constants.o -c -g -fconvert=big-endian -fbounds-check -fno-range-check -ffree-form -ffree-line-length-none module_model_constants.f

rm -f module_wrf_utilities.f
cpp -C -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_wrf_utilities.F > module_wrf_utilities.f
gfortran -o module_wrf_utilities.o -c -g -fconvert=big-endian -fbounds-check -fno-range-check -ffree-form -ffree-line-length-none module_wrf_utilities.f

rm -f kwm_string_utilities.f
cpp -C -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ kwm_string_utilities.F > kwm_string_utilities.f
gfortran -o kwm_string_utilities.o -c -g -fconvert=big-endian -fbounds-check -fno-range-check -ffree-form -ffree-line-length-none kwm_string_utilities.f

make[1]: Leaving directory /home/HRLDAS/src/HRLDAS-v3.6/Utility_routines' (cd Noah; make) make[1]: Entering directory /home/HRLDAS/src/HRLDAS-v3.6/Noah'

rm -f module_sf_myjsfc.f
cpp -C -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_sf_myjsfc.F > module_sf_myjsfc.f
gfortran -o module_sf_myjsfc.o -c -I. -I../Utility_routines -g -fconvert=big-endian -fbounds-check -fno-range-check -ffree-form -ffree-line-length-none module_sf_myjsfc.f

rm -f module_sf_sfclay.f
cpp -C -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_sf_sfclay.F > module_sf_sfclay.f
gfortran -o module_sf_sfclay.o -c -I. -I../Utility_routines -g -fconvert=big-endian -fbounds-check -fno-range-check -ffree-form -ffree-line-length-none module_sf_sfclay.f

rm -f module_sf_noahmplsm.f
cpp -C -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_sf_noahmplsm.F > module_sf_noahmplsm.f
gfortran -o module_sf_noahmplsm.o -c -I. -I../Utility_routines -g -fconvert=big-endian -fbounds-check -fno-range-check -ffree-form -ffree-line-length-none module_sf_noahmplsm.f

rm -f module_sf_noahmp_glacier.f
cpp -C -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_sf_noahmp_glacier.F > module_sf_noahmp_glacier.f
gfortran -o module_sf_noahmp_glacier.o -c -I. -I../Utility_routines -g -fconvert=big-endian -fbounds-check -fno-range-check -ffree-form -ffree-line-length-none module_sf_noahmp_glacier.f

rm -f module_sf_noahmp_groundwater.f
cpp -C -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_sf_noahmp_groundwater.F > module_sf_noahmp_groundwater.f
gfortran -o module_sf_noahmp_groundwater.o -c -I. -I../Utility_routines -g -fconvert=big-endian -fbounds-check -fno-range-check -ffree-form -ffree-line-length-none module_sf_noahmp_groundwater.f

rm -f module_sf_noahmpdrv.f
cpp -C -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_sf_noahmpdrv.F > module_sf_noahmpdrv.f
gfortran -o module_sf_noahmpdrv.o -c -I. -I../Utility_routines -g -fconvert=big-endian -fbounds-check -fno-range-check -ffree-form -ffree-line-length-none module_sf_noahmpdrv.f

make[1]: Leaving directory /home/HRLDAS/src/HRLDAS-v3.6/Noah' (cd IO_code; make) make[1]: Entering directory /home/HRLDAS/src/HRLDAS-v3.6/IO_code'

rm -f module_hrldas_netcdf_io.f
cpp -C -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_hrldas_netcdf_io.F > module_hrldas_netcdf_io.f
gfortran -o module_hrldas_netcdf_io.o -c -g -fconvert=big-endian -fbounds-check -fno-range-check -ffree-form -ffree-line-length-none -I../Utility_routines -I/home/HRLDAS/LIBRARIES/netcdf/include module_hrldas_netcdf_io.f

rm -f module_NoahMP_hrldas_driver.f
cpp -C -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_NoahMP_hrldas_driver.F > module_NoahMP_hrldas_driver.f
gfortran -o module_NoahMP_hrldas_driver.o -c -g -fconvert=big-endian -fbounds-check -fno-range-check -ffree-form -ffree-line-length-none -I.
-I../Noah -I../Utility_routines -I/home/HRLDAS/LIBRARIES/netcdf/include module_NoahMP_hrldas_driver.f
module_NoahMP_hrldas_driver.f:334.18:

REAL, DIMENSION(MAX_SOIL_LEVELS) :: soil_thick_input ! depth to soil in
1
Error: Expression at (1) must be of INTEGER type, found REAL
module_NoahMP_hrldas_driver.f:334.18:

REAL, DIMENSION(MAX_SOIL_LEVELS) :: soil_thick_input ! depth to soil in
1
Error: Expression at (1) must be of INTEGER type, found REAL
module_NoahMP_hrldas_driver.f:334.54:

REAL, DIMENSION(MAX_SOIL_LEVELS) :: soil_thick_input ! depth to soil in
1
Error: The module or main program array 'soil_thick_input' at (1) must have constant shape
make[1]: *** [module_NoahMP_hrldas_driver.o] Error 1
make[1]: Leaving directory `/home/HRLDAS/src/HRLDAS-v3.6/IO_code'
make: *** [all] Error 2

Any thoughts?
Really appreciate your help, in advance.
Thanks, MIshel

[dineshjnu2020]

The error seems to be associated with netcdf library. I updated netcdf library by installing both netcdf-fortran and netcdf-c library and that worked for me. I think HRLDAS need both libraries of netcdf.

And some errors are also associated with OS specific which need some exploration on useful resources e. g. user forum of ubuntu/fedora/debian or whatever OS any body uses.

I hope this may help you.

Dr Dinesh

[hugotseixas]

Hi!
I Don't remember exactly what I did to solve the issue, but I think it had a lot to do with the netcdf libraries, as dineshjnu2020 said. I also made some changes in the user_build_options file, here is the configuration I'm using:

COMPILERF90 = /usr/bin/gfortran-7
FREESOURCE = -ffree-form -ffree-line-length-none
F90FLAGS = -g -fconvert=big-endian -fbounds-check -fno-range-check
MODFLAG = -I
LDFLAGS =
CPP = /usr/bin/cpp-7
CPPFLAGS = -P -traditional -D_GFORTRAN_ # -D_HRLDAS_URBAN_
LIBS =
LIBJASPER = -ljpeg -L/usr/local/lib -ljasper
INCJASPER = -I/usr/local/include/jasper
NETCDFMOD = -I/usr/local/include
NETCDFLIB = -L/usr/local/lib -lnetcdf -lnetcdff
BZIP2 = YES
BZIP2_LIB = -lbz2
BZIP2_INCLUDE = -I/usr/local/include
RM = rm -f
CC = /usr/bin/gcc-7

After addressing both questions I manage to install the model, the only error that I get now is when I try to run the model with the dynamic vegetation option turned on.

I hope this information can be useful.

[mmelendezb]

Hi Dinesh and Hugo:
First of all, thank again for your feedback!
I tried to install updated versions of netcdf (netcdf c an fortran) and finally, my user_build_options file remains as follow:

COMPILERF90 = gfortran
FREESOURCE = -ffree-form -ffree-line-length-none
F90FLAGS = -g -fconvert=big-endian -fbounds-check -fno-range-check
MODFLAG = -I
LDFLAGS =
CPP = cpp
CPPFLAGS = -C -P -traditional -D_GFORTRAN_ # -D_HRLDAS_URBAN_
LIBS =
LIBJASPER = -ljpeg -L/usr/lib64/ -ljasper
INCJASPER = -I/usr/include
NETCDFMOD = -I/usr/lib64/gfortran/modules/
NETCDFLIB = -L/usr/lib64/ -lnetcdf -lnetcdff
BZIP2 = YES
BZIP2_LIB = -lbz2
BZIP2_INCLUDE = -I/usr/include
RM = rm -f
CC = cc

But still, my outputs are:
[root@3b14ea545daf HRLDAS-v3.6]# make
(cd Utility_routines; make)
make[1]: Entering directory /home/HRLDAS/HRLDAS-v3.6/Utility_routines' make[1]: Nothing to be done for all'.
make[1]: Leaving directory /home/HRLDAS/HRLDAS-v3.6/Utility_routines' (cd Noah; make) make[1]: Entering directory /home/HRLDAS/HRLDAS-v3.6/Noah'
make[1]: Nothing to be done for all'. make[1]: Leaving directory /home/HRLDAS/HRLDAS-v3.6/Noah'
(cd IO_code; make)
make[1]: Entering directory `/home/HRLDAS/HRLDAS-v3.6/IO_code'

rm -f module_NoahMP_hrldas_driver.f
cpp -C -P -traditional -D_GFORTRAN_ -D_HRLDAS_OFFLINE_ module_NoahMP_hrldas_driver.F > module_NoahMP_hrldas_driver.f
gfortran -o module_NoahMP_hrldas_driver.o -c -g -fconvert=big-endian -fbounds-check -fno-range-check -ffree-form -ffree-line-length-none -I.
-I../Noah -I../Utility_routines -I/usr/lib64/gfortran/modules/ module_NoahMP_hrldas_driver.f
module_NoahMP_hrldas_driver.f:334.18:

REAL, DIMENSION(MAX_SOIL_LEVELS) :: soil_thick_input ! depth to soil in
1
Error: Expression at (1) must be of INTEGER type, found REAL
module_NoahMP_hrldas_driver.f:334.18:

REAL, DIMENSION(MAX_SOIL_LEVELS) :: soil_thick_input ! depth to soil in
1
Error: Expression at (1) must be of INTEGER type, found REAL
module_NoahMP_hrldas_driver.f:334.54:

REAL, DIMENSION(MAX_SOIL_LEVELS) :: soil_thick_input ! depth to soil in
1
Error: The module or main program array 'soil_thick_input' at (1) must have constant shape
make[1]: *** [module_NoahMP_hrldas_driver.o] Error 1
make[1]: Leaving directory `/home/HRLDAS/HRLDAS-v3.6/IO_code'
make: *** [all] Error 2

Previously, I've tried with Ubuntu 20.04 and I had the same results. Therefore, this new version was run in CentOS 7. as is suggested in the manual available for HRLDAS version 3.4.

Any another suggestion, is more than welcome!
Have a nice day,
Mishel