diff --git a/data/modules/longreadsum/HG002_summary.bam.json b/data/modules/longreadsum/HG002_summary.bam.json new file mode 100644 index 00000000..0a5fee15 --- /dev/null +++ b/data/modules/longreadsum/HG002_summary.bam.json @@ -0,0 +1,37 @@ +{ + "filetype": "bam", + "longreadsum_version": "v1.4.0-5-g9e0d2c4", + "total_num_reads": 50, + "total_num_bases": 340189, + "longest_read_length": 19696, + "n50_read_length": 8733, + "mean_read_length": 6803.78, + "median_read_length": 5192, + "gc_percent": 41.56, + "mapped": { + "total_num_reads": 50, + "total_num_bases": 340189, + "longest_read_length": 19696, + "n50_read_length": 8733, + "mean_read_length": 6803.78, + "median_read_length": 5192, + "gc_percent": 41.56 + }, + "alignments": { + "primary": 50, + "secondary": 13, + "supplementary": 56, + "reads_with_secondary": 4, + "reads_with_supplementary": 50, + "reads_with_both": 4, + "forward": 53, + "reverse": 53 + }, + "base_alignment": { + "matched": 304323, + "mismatched": 41477, + "insertions": 10639, + "deletions": 18638, + "clipped": 178855 + } +}