From aabab915c62c807563eb32afb7332aede99983aa Mon Sep 17 00:00:00 2001 From: "Matthew W. Thompson" Date: Mon, 1 Apr 2024 11:00:25 -0500 Subject: [PATCH] Add AM1-BCC to style guide --- Writing/StyleGuide.md | 1 + 1 file changed, 1 insertion(+) diff --git a/Writing/StyleGuide.md b/Writing/StyleGuide.md index 9d1e59f..82c59aa 100644 --- a/Writing/StyleGuide.md +++ b/Writing/StyleGuide.md @@ -26,6 +26,7 @@ But some issues are worth addressing specifically within the group because they - "Van der Waals": Describes the physical interaction/behavior, in contrast to Lennard-Jones, a particular potential function which can be used to describe this interaction. - "Pose": Usually used to discuss a static placement of a ligand/small molecule in a receptor. Refers primarily to the placement of the small molecule, NOT to the structure of the receptor. - "Binding mode": Refers to the overall placement/orientation/conformation of a small molecule bound to a receptor, and gives a less static picture than the word "pose". With care, the idea of "binding mode" can be generalized to include the relevant receptor conformation(s), bound waters, etc. It can also include a group of relevant microstates that correspond to a metastable state. +- "AM1-BCC", not "AM1BCC" - OpenFF-specific terms: - Capitalize the first letter of each word in a compound word software name released by OpenFF: - "BespokeFit" is the name of the package for fitting custom torsions