group_by_genotype() v2.0.7 vs v3.0.1

[FedericaBrando]

Hi, I had done some analysis with the tool last year and I used the group_by_genotype() function in Mosaic version 2.0.7.
Lately I came across the same data and I wanted to perform some more analysis and I updated the tool to version 3.0.1 and, interestingly enough, I got some different results than the one I had a year before.

I was wondering if anything has changed in the underlying algorithm that could explain these changes.

I am using the same .h5 file for both analysis.

Thank you

[KKJSP]

@FedericaBrando, the group_by_genotype algorithm has not changed. However, fitler_variants has been modified in v3.0.1. If you were using the NGT_FILTERED layer in group_by_genotype then you can expect to see slightly different results.

Here is the changelog for v3