Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

group_by_genotype() v2.0.7 vs v3.0.1 #17

Open
FedericaBrando opened this issue Aug 9, 2023 · 1 comment
Open

group_by_genotype() v2.0.7 vs v3.0.1 #17

FedericaBrando opened this issue Aug 9, 2023 · 1 comment

Comments

@FedericaBrando
Copy link

Hi, I had done some analysis with the tool last year and I used the group_by_genotype() function in Mosaic version 2.0.7.
Lately I came across the same data and I wanted to perform some more analysis and I updated the tool to version 3.0.1 and, interestingly enough, I got some different results than the one I had a year before.

I was wondering if anything has changed in the underlying algorithm that could explain these changes.

I am using the same .h5 file for both analysis.

Thank you

@KKJSP
Copy link
Collaborator

KKJSP commented Aug 9, 2023

@FedericaBrando, the group_by_genotype algorithm has not changed. However, fitler_variants has been modified in v3.0.1. If you were using the NGT_FILTERED layer in group_by_genotype then you can expect to see slightly different results.

Here is the changelog for v3

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants