code-coverage.yml

name: Compute code coverage for VAMPyR

on:
  push:
    branches:
      - master
  pull_request:
    branches:
      - master

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

env:
  BUILD_TYPE: Debug

jobs:
  build:
    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v3

    - name: Set up environment
      uses: conda-incubator/setup-miniconda@v2
      with:
          auto-update-conda: true
          auto-activate-base: false
          activate-environment: vampyr-gha
          environment-file: environment.yml
          channel-priority: true
          python-version: 3.9

    - name: Configure
      shell: bash -l {0}
      run: |
        cmake -S. -Bbuild -DCMAKE_BUILD_TYPE=$BUILD_TYPE -GNinja -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/Software/VAMPyR -DCMAKE_VERBOSE_MAKEFILE=ON -DENABLE_CODE_COVERAGE=ON
    
    - name: Build
      shell: bash -l {0}
      env:
        CXXFLAGS: ""
      run: |
        cmake --build build --config $BUILD_TYPE --target install -- -v -d stats
    
    - name: Test VAMPyR and generate coverage report
      shell: bash -l {0}
      run: |
        cd build/lib/python3.9/site-packages
        python -m pytest --cov=vampyr --cov-report=xml --doctest-modules

    - name: Upload coverage to Codecov
      uses: codecov/codecov-action@v1