From 09f5f1474201949632e35b841798288d9e9ccf25 Mon Sep 17 00:00:00 2001
From: Xylar Asay-Davis <xylarstorm@gmail.com>
Date: Fri, 15 Aug 2025 11:20:35 +0200
Subject: [PATCH 1/5] Fix formatting of docs conf.py

---
 conda_package/docs/conf.py | 12 +++++++-----
 1 file changed, 7 insertions(+), 5 deletions(-)

diff --git a/conda_package/docs/conf.py b/conda_package/docs/conf.py
index 6cac7a1df..f8e89e2ca 100644
--- a/conda_package/docs/conf.py
+++ b/conda_package/docs/conf.py
@@ -60,11 +60,13 @@
 # General information about the project.
 project = 'mpas_tools'
 year = date.today().year
-copyright = f'This software is open source software available under the BSD-3' \
-            f'license. Copyright (c) {year} Triad National Security, LLC. ' \
-            f'All rights reserved. Copyright (c) {year} Lawrence Livermore ' \
-            f'National Security, LLC. All rights reserved. Copyright (c) ' \
-            f'{year} UT-Battelle, LLC. All rights reserved.'
+copyright = (
+    f'This software is open source software available under the BSD-3'
+    f'license. Copyright (c) {year} Triad National Security, LLC. '
+    f'All rights reserved. Copyright (c) {year} Lawrence Livermore '
+    f'National Security, LLC. All rights reserved. Copyright (c) '
+    f'{year} UT-Battelle, LLC. All rights reserved.'
+)
 author = 'MPAS-Tools development team'
 
 # The version info for the project you're documenting, acts as replacement for

From dca44e5164e84b0e26c2af19ac44917fca3ed421 Mon Sep 17 00:00:00 2001
From: Xylar Asay-Davis <xylarstorm@gmail.com>
Date: Fri, 15 Aug 2025 11:20:48 +0200
Subject: [PATCH 2/5] Add a script for bumping the repo version number

---
 update_version.py | 149 ++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 149 insertions(+)
 create mode 100755 update_version.py

diff --git a/update_version.py b/update_version.py
new file mode 100755
index 000000000..af4cd77af
--- /dev/null
+++ b/update_version.py
@@ -0,0 +1,149 @@
+#! /usr/bin/env python
+import argparse
+import re
+import sys
+from datetime import date
+from pathlib import Path
+
+
+def parse_args():
+    parser = argparse.ArgumentParser(
+        description=(
+            "Bump version across files (CITATION.cff, __init__.py, meta.yaml)."
+        )
+    )
+    parser.add_argument(
+        "-v",
+        "--version",
+        required=True,
+        help="New version in the form X.Y.Z (e.g., 1.3.0)",
+    )
+    return parser.parse_args()
+
+
+def ensure_semver(version: str):
+    m = re.fullmatch(r"(\d+)\.(\d+)\.(\d+)", version)
+    if not m:
+        sys.exit("Error: version must be in the form X.Y.Z (e.g., 1.3.0).")
+    return tuple(int(p) for p in m.groups())
+
+
+def read_text(path: Path):
+    try:
+        return path.read_text(encoding="utf-8")
+    except FileNotFoundError:
+        return None
+
+
+def write_text_if_changed(path: Path, content: str) -> bool:
+    old = read_text(path)
+    if old is None:
+        return False
+    if old != content:
+        path.write_text(content, encoding="utf-8")
+        return True
+    return False
+
+
+def bump_citation(root: Path, version: str, today: str) -> bool:
+    path = root / "CITATION.cff"
+    content = read_text(path)
+    if content is None:
+        print(f"Skip (not found): {path}")
+        return False
+
+    # version: 1.2.1  -> version: 1.2.2
+    content_new = re.sub(
+        r"(?m)^(version:\s*)(.+)\s*$", rf"\g<1>{version}", content, count=1
+    )
+    # date-released: '2025-06-12' -> date-released: 'YYYY-MM-DD'
+    content_new = re.sub(
+        r"""(?m)^(date-released:\s*)['"]?\d{4}-\d{2}-\d{2}['"]?\s*$""",
+        rf"\g<1>'{today}'",
+        content_new,
+        count=1,
+    )
+    # Ensure a final newline at EOF
+    if not content_new.endswith("\n"):
+        content_new += "\n"
+
+    changed = write_text_if_changed(path, content_new)
+    if changed:
+        print(f"Updated: {path}")
+    else:
+        print(f"No changes: {path}")
+    return changed
+
+
+def bump_init(pkg_dir: Path, version_tuple) -> bool:
+    path = pkg_dir / "mpas_tools" / "__init__.py"
+    content = read_text(path)
+    if content is None:
+        print(f"Skip (not found): {path}")
+        return False
+
+    major, minor, patch = version_tuple
+    content_new = re.sub(
+        r"(?m)^__version_info__\s*=\s*\(.+\)\s*$",
+        f"__version_info__ = ({major}, {minor}, {patch})",
+        content,
+        count=1,
+    )
+
+    changed = write_text_if_changed(path, content_new)
+    if changed:
+        print(f"Updated: {path}")
+    else:
+        print(f"No changes: {path}")
+    return changed
+
+
+def bump_meta(recipe_dir: Path, version: str) -> bool:
+    path = recipe_dir / "meta.yaml"
+    content = read_text(path)
+    if content is None:
+        print(f"Skip (not found): {path}")
+        return False
+
+    # {% set version = "1.2.1" %} -> {% set version = "1.2.2" %}
+    content_new = re.sub(
+        r'(?m)^\{\%\s*set\s+version\s*=\s*["\']([^"\']+)["\']\s*\%\}',
+        f'{{% set version = "{version}" %}}',
+        content,
+        count=1,
+    )
+
+    changed = write_text_if_changed(path, content_new)
+    if changed:
+        print(f"Updated: {path}")
+    else:
+        print(f"No changes: {path}")
+    return changed
+
+
+def main():
+    args = parse_args()
+    version = args.version.strip()
+    version_tuple = ensure_semver(version)
+    today = date.today().isoformat()
+
+    # Resolve repo layout relative to this script
+    script_dir = Path(__file__).resolve().parent
+    repo_root = script_dir
+    pkg_dir = script_dir / "conda_package"
+    recipe_dir = pkg_dir / "recipe"
+
+    changed = []
+    changed.append(bump_citation(repo_root, version, today))
+    changed.append(bump_init(pkg_dir, version_tuple))
+    changed.append(bump_meta(recipe_dir, version))
+
+    if not any(changed):
+        print("No files modified.")
+        return 0
+    print(f"Done. Bumped to {version} (date-released: {today}).")
+    return 0
+
+
+if __name__ == "__main__":
+    raise SystemExit(main())

From 508279a4073cb698336d8a49377f68313f131c01 Mon Sep 17 00:00:00 2001
From: Xylar Asay-Davis <xylarstorm@gmail.com>
Date: Fri, 15 Aug 2025 11:22:04 +0200
Subject: [PATCH 3/5] Update to v1.3.0

---
 CITATION.cff                         | 5 ++---
 conda_package/mpas_tools/__init__.py | 2 +-
 conda_package/recipe/meta.yaml       | 2 +-
 3 files changed, 4 insertions(+), 5 deletions(-)

diff --git a/CITATION.cff b/CITATION.cff
index a98bfe58e..1896828ad 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -76,6 +76,5 @@ authors:
     family-names: Smith
 repository-code: 'https://github.com/MPAS-Dev/MPAS-Tools'
 url: 'https://mpas-dev.github.io/MPAS-Tools/master/'
-version: 1.2.2
-date-released: '2025-06-15'
-
+version: 1.3.0
+date-released: '2025-08-15'
\ No newline at end of file
diff --git a/conda_package/mpas_tools/__init__.py b/conda_package/mpas_tools/__init__.py
index 318ab213d..4a117aa44 100644
--- a/conda_package/mpas_tools/__init__.py
+++ b/conda_package/mpas_tools/__init__.py
@@ -1,2 +1,2 @@
-__version_info__ = (1, 2, 2)
+__version_info__ = (1, 3, 0)
 __version__ = '.'.join(str(vi) for vi in __version_info__)
diff --git a/conda_package/recipe/meta.yaml b/conda_package/recipe/meta.yaml
index 712b6aa07..723307976 100644
--- a/conda_package/recipe/meta.yaml
+++ b/conda_package/recipe/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "mpas_tools" %}
-{% set version = "1.2.2" %}
+{% set version = "1.3.0" %}
 
 package:
   name: {{ name|lower }}

From 67f94826c71ced584839b3ef535a7553a67b2800 Mon Sep 17 00:00:00 2001
From: Xylar Asay-Davis <xylarstorm@gmail.com>
Date: Fri, 15 Aug 2025 11:27:21 +0200
Subject: [PATCH 4/5] Add author

---
 CITATION.cff | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/CITATION.cff b/CITATION.cff
index 1896828ad..9ea057712 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -65,6 +65,9 @@ authors:
   - given-names: Andrew
     family-names: Nolan
     orcid: 'https://orcid.org/0000-0002-9785-0196'
+  - given-names: Courtney
+    family-names: Shafer
+    orcid: 'https://orcid.org/0009-0001-3651-2812'
   - family-names: Saenz
     given-names: Juan
   - given-names: Maciej
@@ -77,4 +80,4 @@ authors:
 repository-code: 'https://github.com/MPAS-Dev/MPAS-Tools'
 url: 'https://mpas-dev.github.io/MPAS-Tools/master/'
 version: 1.3.0
-date-released: '2025-08-15'
\ No newline at end of file
+date-released: '2025-08-15'

From 8ef9c5921888c1d2f6a759fa16cd4010b40759c2 Mon Sep 17 00:00:00 2001
From: Xylar Asay-Davis <xylarstorm@gmail.com>
Date: Fri, 15 Aug 2025 06:29:29 -0500
Subject: [PATCH 5/5] Update CI files to match conda-forge

---
 conda_package/ci/linux_64_python3.10.____cpython.yaml | 4 ++--
 conda_package/ci/linux_64_python3.11.____cpython.yaml | 4 ++--
 conda_package/ci/linux_64_python3.12.____cpython.yaml | 4 ++--
 conda_package/ci/linux_64_python3.13.____cpython.yaml | 4 ++--
 conda_package/ci/linux_64_python3.9.____cpython.yaml  | 4 ++--
 conda_package/ci/osx_64_python3.10.____cpython.yaml   | 2 +-
 conda_package/ci/osx_64_python3.11.____cpython.yaml   | 2 +-
 conda_package/ci/osx_64_python3.12.____cpython.yaml   | 2 +-
 conda_package/ci/osx_64_python3.13.____cpython.yaml   | 2 +-
 conda_package/ci/osx_64_python3.9.____cpython.yaml    | 2 +-
 10 files changed, 15 insertions(+), 15 deletions(-)

diff --git a/conda_package/ci/linux_64_python3.10.____cpython.yaml b/conda_package/ci/linux_64_python3.10.____cpython.yaml
index 7d3422283..c5a01eccd 100644
--- a/conda_package/ci/linux_64_python3.10.____cpython.yaml
+++ b/conda_package/ci/linux_64_python3.10.____cpython.yaml
@@ -13,13 +13,13 @@ cxx_compiler:
 cxx_compiler_version:
 - '13'
 docker_image:
-- quay.io/condaforge/linux-anvil-cos7-x86_64
+- quay.io/condaforge/linux-anvil-x86_64:alma9
 fortran_compiler:
 - gfortran
 fortran_compiler_version:
 - '13'
 hdf5:
-- 1.14.4
+- 1.14.6
 libnetcdf:
 - 4.9.2
 netcdf_fortran:
diff --git a/conda_package/ci/linux_64_python3.11.____cpython.yaml b/conda_package/ci/linux_64_python3.11.____cpython.yaml
index e9a9811e1..5f3013292 100644
--- a/conda_package/ci/linux_64_python3.11.____cpython.yaml
+++ b/conda_package/ci/linux_64_python3.11.____cpython.yaml
@@ -13,13 +13,13 @@ cxx_compiler:
 cxx_compiler_version:
 - '13'
 docker_image:
-- quay.io/condaforge/linux-anvil-cos7-x86_64
+- quay.io/condaforge/linux-anvil-x86_64:alma9
 fortran_compiler:
 - gfortran
 fortran_compiler_version:
 - '13'
 hdf5:
-- 1.14.4
+- 1.14.6
 libnetcdf:
 - 4.9.2
 netcdf_fortran:
diff --git a/conda_package/ci/linux_64_python3.12.____cpython.yaml b/conda_package/ci/linux_64_python3.12.____cpython.yaml
index dd2339584..4738dda10 100644
--- a/conda_package/ci/linux_64_python3.12.____cpython.yaml
+++ b/conda_package/ci/linux_64_python3.12.____cpython.yaml
@@ -13,13 +13,13 @@ cxx_compiler:
 cxx_compiler_version:
 - '13'
 docker_image:
-- quay.io/condaforge/linux-anvil-cos7-x86_64
+- quay.io/condaforge/linux-anvil-x86_64:alma9
 fortran_compiler:
 - gfortran
 fortran_compiler_version:
 - '13'
 hdf5:
-- 1.14.4
+- 1.14.6
 libnetcdf:
 - 4.9.2
 netcdf_fortran:
diff --git a/conda_package/ci/linux_64_python3.13.____cpython.yaml b/conda_package/ci/linux_64_python3.13.____cpython.yaml
index 0e63a1fed..ef027c9f7 100644
--- a/conda_package/ci/linux_64_python3.13.____cpython.yaml
+++ b/conda_package/ci/linux_64_python3.13.____cpython.yaml
@@ -13,13 +13,13 @@ cxx_compiler:
 cxx_compiler_version:
 - '13'
 docker_image:
-- quay.io/condaforge/linux-anvil-cos7-x86_64
+- quay.io/condaforge/linux-anvil-x86_64:alma9
 fortran_compiler:
 - gfortran
 fortran_compiler_version:
 - '13'
 hdf5:
-- 1.14.4
+- 1.14.6
 libnetcdf:
 - 4.9.2
 netcdf_fortran:
diff --git a/conda_package/ci/linux_64_python3.9.____cpython.yaml b/conda_package/ci/linux_64_python3.9.____cpython.yaml
index 4e1d5c98a..8288041bb 100644
--- a/conda_package/ci/linux_64_python3.9.____cpython.yaml
+++ b/conda_package/ci/linux_64_python3.9.____cpython.yaml
@@ -13,13 +13,13 @@ cxx_compiler:
 cxx_compiler_version:
 - '13'
 docker_image:
-- quay.io/condaforge/linux-anvil-cos7-x86_64
+- quay.io/condaforge/linux-anvil-x86_64:alma9
 fortran_compiler:
 - gfortran
 fortran_compiler_version:
 - '13'
 hdf5:
-- 1.14.4
+- 1.14.6
 libnetcdf:
 - 4.9.2
 netcdf_fortran:
diff --git a/conda_package/ci/osx_64_python3.10.____cpython.yaml b/conda_package/ci/osx_64_python3.10.____cpython.yaml
index 034b64155..a10d0af4a 100644
--- a/conda_package/ci/osx_64_python3.10.____cpython.yaml
+++ b/conda_package/ci/osx_64_python3.10.____cpython.yaml
@@ -19,7 +19,7 @@ fortran_compiler:
 fortran_compiler_version:
 - '13'
 hdf5:
-- 1.14.4
+- 1.14.6
 libnetcdf:
 - 4.9.2
 llvm_openmp:
diff --git a/conda_package/ci/osx_64_python3.11.____cpython.yaml b/conda_package/ci/osx_64_python3.11.____cpython.yaml
index a8af6b0c8..53fd73c4f 100644
--- a/conda_package/ci/osx_64_python3.11.____cpython.yaml
+++ b/conda_package/ci/osx_64_python3.11.____cpython.yaml
@@ -19,7 +19,7 @@ fortran_compiler:
 fortran_compiler_version:
 - '13'
 hdf5:
-- 1.14.4
+- 1.14.6
 libnetcdf:
 - 4.9.2
 llvm_openmp:
diff --git a/conda_package/ci/osx_64_python3.12.____cpython.yaml b/conda_package/ci/osx_64_python3.12.____cpython.yaml
index 0c9ec6cd6..a3c13e58f 100644
--- a/conda_package/ci/osx_64_python3.12.____cpython.yaml
+++ b/conda_package/ci/osx_64_python3.12.____cpython.yaml
@@ -19,7 +19,7 @@ fortran_compiler:
 fortran_compiler_version:
 - '13'
 hdf5:
-- 1.14.4
+- 1.14.6
 libnetcdf:
 - 4.9.2
 llvm_openmp:
diff --git a/conda_package/ci/osx_64_python3.13.____cpython.yaml b/conda_package/ci/osx_64_python3.13.____cpython.yaml
index 5f91480ea..a63d13635 100644
--- a/conda_package/ci/osx_64_python3.13.____cpython.yaml
+++ b/conda_package/ci/osx_64_python3.13.____cpython.yaml
@@ -19,7 +19,7 @@ fortran_compiler:
 fortran_compiler_version:
 - '13'
 hdf5:
-- 1.14.4
+- 1.14.6
 libnetcdf:
 - 4.9.2
 llvm_openmp:
diff --git a/conda_package/ci/osx_64_python3.9.____cpython.yaml b/conda_package/ci/osx_64_python3.9.____cpython.yaml
index 22c972534..d845ca340 100644
--- a/conda_package/ci/osx_64_python3.9.____cpython.yaml
+++ b/conda_package/ci/osx_64_python3.9.____cpython.yaml
@@ -19,7 +19,7 @@ fortran_compiler:
 fortran_compiler_version:
 - '13'
 hdf5:
-- 1.14.4
+- 1.14.6
 libnetcdf:
 - 4.9.2
 llvm_openmp: