schedule.md

layout	title
default	Schedule

Tutorial schedule

- lecture; - hands-on workshop; - break

All of the following notebooks can be downloaded from the source Github repository. Please refer to the html files if you have difficulty with installations. The schedule time is indicated in UTC, check your time here.

Instructions on how to run each notebook are indicated in the labs page after installing each conda environment.

Before the tutorial

Prepare by going through the installation instructions and the following notebooks:

• Data pre-processing notebook (html)
• Dimesionality reduction (html)
• Feature selection notebook (html)

July 22

11.00 - 11.10 Introduction (Rui, slides)

11.10 - 11.30 Machine Learning view of Integrative Omics (Nikolay, slides)

11.30 - 12.00 Supervised data integration (Nikolay, slides)

12.00 - 12.10 Break

12.10 - 13.00 Unsupervised data integration (Nikolay, slides)

13.00 - 13.10 Break

13.10 - 14.35 Hands-on exercises. Choose one of the following:
      Supervised integration notebook (html) found in ./session_ml/SupervisedOMICsIntegration/supervised_omics_integr_CLL.Rmd
      Unsupervised integration notebook (html) found in ./session_ml/UnsupervisedOMICsIntegration/UnsupervisedOMICsIntegration.Rmd

14.35 - 14.40 Break

14.40 - 15.00 Summary (Nikolay)

July 23

11.00 - 11.50 Introduction to network analysis (Rui, slides)

11.50 - 12.00 Break

12.00 - 12.30 Network properties and community identification (Rui, slides 1)

12.30 - 12.40 Break

12.40 - 13.10 Network meta-analysis (Ashfaq,lecture, pdf)

13.10 - 14.35 Hans-on exercises. Choose one of the following:
      Multi-omic network analysis notebook (html) found in ./session_topology/lab.ipynb
      Network meta-analysis notebook (html) found in ./session_meta/lab_meta-analayses-v2.Rmd

14.35 - 14.40 Break

14.40 - 15.00 Summary (Rui and Ashfaq)

Teachers:

• Ashfaq Ali
• Nikolay Oskolkov
• Rui Benfeitas