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1 parent d990456 commit eca8bb2

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Lines changed: 2 additions & 3 deletions

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experiment/src/org/labkey/experiment/XarReader.java

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Original file line numberDiff line numberDiff line change
@@ -1109,7 +1109,6 @@ private void loadExperimentRun(ExperimentRunType a, List<ExpMaterial> startingMa
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vals.setProtocolLSID(protocol.getLSID());
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vals.setComments(trimString(a.getComments()));
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// vals.setFilePathRoot(FileUtil.getAbsolutePath(_xarSource.getRootPath())); // FileUtil.getAbsolutePath(runContext.getContainer(), _job.getPipeRoot().getRootNioPath()));
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vals.setFilePathRoot(FileUtil.getAbsolutePath(_xarSource.getJobRootPath()));
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vals.setContainer(getContainer());
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String workflowTaskLSID = a.getWorkflowTaskLSID();

experiment/src/org/labkey/experiment/pipeline/MoveRunsTask.java

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@@ -225,8 +225,8 @@ public Path getJobRootPath()
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{
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var pipelineJob = getXarContext().getJob();
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return pipelineJob != null
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? FileUtil.stringToPath(getXarContext().getContainer(), pipelineJob.getPipeRoot().getRootFileLike().toNioPathForRead().toString())
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: getRootPath();
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? pipelineJob.getPipeRoot().getRootFileLike().toNioPathForRead()
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: super.getJobRootPath();
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}
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@Override

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