From 17a930b58d67756ddb3d13cc0c37d055f39edd28 Mon Sep 17 00:00:00 2001
From: chvillanuevap <villanueva18@llnl.gov>
Date: Thu, 22 May 2025 23:58:34 -0700
Subject: [PATCH 1/2] Scalar wave branch

---
 src/serac/physics/base_physics.hpp             | 18 +++++++++---------
 .../boundary_conditions/boundary_condition.cpp |  2 +-
 2 files changed, 10 insertions(+), 10 deletions(-)

diff --git a/src/serac/physics/base_physics.hpp b/src/serac/physics/base_physics.hpp
index 403d0b3f5e..e687920b04 100644
--- a/src/serac/physics/base_physics.hpp
+++ b/src/serac/physics/base_physics.hpp
@@ -481,6 +481,15 @@ class BasePhysics {
    */
   std::string name() const { return name_; }
 
+  /**
+   * @brief Accessor for getting all of the primal solutions from the physics modules at a given
+   * checkpointed cycle index
+   *
+   * @param cycle The cycle to retrieve state from
+   * @return A map containing the primal field names and their associated FiniteElementStates at the requested cycle
+   */
+  std::unordered_map<std::string, FiniteElementState> getCheckpointedStates(int cycle);
+
  protected:
   /**
    * @brief Create a paraview data collection for the physics package if requested
@@ -503,15 +512,6 @@ class BasePhysics {
    */
   void initializeBasePhysicsStates(int cycle, double time);
 
-  /**
-   * @brief Accessor for getting all of the primal solutions from the physics modules at a given
-   * checkpointed cycle index
-   *
-   * @param cycle The cycle to retrieve state from
-   * @return A map containing the primal field names and their associated FiniteElementStates at the requested cycle
-   */
-  std::unordered_map<std::string, FiniteElementState> getCheckpointedStates(int cycle);
-
   /// @brief Name of the physics module
   std::string name_ = {};
 
diff --git a/src/serac/physics/boundary_conditions/boundary_condition.cpp b/src/serac/physics/boundary_conditions/boundary_condition.cpp
index 4a216c78c6..7191fa30ff 100644
--- a/src/serac/physics/boundary_conditions/boundary_condition.cpp
+++ b/src/serac/physics/boundary_conditions/boundary_condition.cpp
@@ -99,7 +99,7 @@ void BoundaryCondition::setDofs(mfem::Vector& vector, const double time) const
     // a single component of a vector-valued function
     auto scalar_coef = get<std::shared_ptr<mfem::Coefficient>>(coef_);
     scalar_coef->SetTime(time);
-    if (component_) {
+    if (component_ || attr_markers_.Size() == 0) { // TODO: If attribute markers is empty, that means this is applied to the entire domain (component could be zero).
       state.project(*scalar_coef, dof_list, *component_);
 
     } else {

From 6d32b0a0470592d53c4f74ce7fa6242f4ba73b04 Mon Sep 17 00:00:00 2001
From: chvillanuevap <villanueva18@llnl.gov>
Date: Fri, 6 Jun 2025 09:53:54 -0700
Subject: [PATCH 2/2] Change time iteration log formatting

---
 src/serac/physics/state/state_manager.cpp | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/serac/physics/state/state_manager.cpp b/src/serac/physics/state/state_manager.cpp
index 194e33077d..f3a980228a 100644
--- a/src/serac/physics/state/state_manager.cpp
+++ b/src/serac/physics/state/state_manager.cpp
@@ -195,7 +195,7 @@ void StateManager::save(const double t, const int cycle, const std::string& mesh
   auto& datacoll = datacolls_.at(mesh_tag);
   std::string file_path = axom::utilities::filesystem::joinPath(datacoll.GetPrefixPath(), datacoll.GetCollectionName());
   SLIC_INFO_ROOT(
-      axom::fmt::format("Saving data collection at time: '{}' and cycle: '{}' to path: '{}'", t, cycle, file_path));
+      axom::fmt::format("Saving data collection at time: '{:.9e}' and cycle: '{:06d}' to path: '{}'", t, cycle, file_path));
 
   datacoll.SetTime(t);
   datacoll.SetCycle(cycle);