multiple mutations at the same position(s)

[amelie-stein]

Starting from a pipeline mutfile with two mutations at the same positions, we only get output for the second.
Hypothesis: this is because the mutfile translator (from pipeline-style input to Rosetta-mutfile-style) uses only the position(s) for naming, but not the target amino acids.
Possible solutions:

• pre-screen pipeline mutfile for variants that use the same positions, and merge those into a single (Rosetta) mutfile
• include target AAs in mutfile name