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update qnet after net move only if affected #25

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crsl4 opened this issue Nov 17, 2015 · 0 comments
Open

update qnet after net move only if affected #25

crsl4 opened this issue Nov 17, 2015 · 0 comments
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@crsl4
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crsl4 commented Nov 17, 2015

a given move on the current network will not affect all QuartetNetwork objects, some will remain the same. At the moment, the pseudolik of a qnet is not recalculated after a change in branch lengths if the branch lengths are not part of qnet. However, when the network is changed by a move, all the pseudolik of qnet are updated. We could reduce the computation by only changing the qnet that actually changed with the network move.
We can know this because each qnet know which edges affect its pseudolik.

@crsl4 crsl4 added the to do label Nov 17, 2015
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