This repository houses the code and files related to the paper titled Limitations of the inference of the distribution of fitness effects of new mutations in partially selfing populations with linkage, by Austin Daigle and Parul Johri. Find the preprint here.
This directory contains slim scripts as well as slurm scripts used to launch all simulations.
This directory contains scripts to calculate neutral and selected site frequency spectra using simulation outputs.
This directory contains scripts used to prepare config files and SLURM scripts to run DFE-alpha and GRAPES using the SFS.
The scripts directory contains code used for the analysis of DFE programs and the production of figures for the paper.
This directory contains the paper's figures, in SVG format.