Update Python to version 3.12

Author: JohT

.github/workflows/public-analyze-code-graph.yml

@@ -72,7 +72,7 @@ jobs:
         include:
         - os: ubuntu-22.04
           java: 17
-          python: 3.11
+          python: 3.12
           miniforge: 24.9.0-0
     steps:
       - name: Assure that either artifacts-upload-name or sources-upload-name is set

jupyter/environment.yml

@@ -2,14 +2,16 @@ name: codegraph
 channels:
   - conda-forge
 dependencies:
-  - python=3.11.*
+  - python=3.12.*
   - jupyter=1.0.*
-  - matplotlib=3.6.*
+  - matplotlib=3.10.*
   - nbconvert=7.2.*
   - nbconvert-webpdf=7.2.*
-  - numpy=1.23.*
-  - pandas=1.5.*
-  - pip=22.3.*
+  - numpy=1.26.*
+  - pandas=2.2.*
+  - pip=25.0.*
+  - setuptools=75.8.* # opentsne uses sklearn.base uses joblib uses distutils missing in Python >= 12 (TODO use native openTSNE?) 
+  - typing-extensions=4.12.* # Also needed for opentsne and Python >= 3.12
   - opentsne=1.0.* # to visualize node embeddings in 2D (t-SNE dimensionality reduction)
   - pip:
       - monotonic==1.*